Propagation of Crp regulog to Shewanella violacea DSS12
| Source regulog: | Crp - Shewanellaceae |
| Regulator type: | Transcription factor |
| Regulator family: | CRP |
| Regulation mode: | repressor (activator) |
| Biological process: | Carbon catabolism |
| Effector: | Cyclic 3',5'-AMP |
| Phylum: | Proteobacteria |
| Propagated regulon: | |
| Target genome | Shewanella violacea DSS12 |
| Orthologous TF(s) | SVI_0504 |
| Regulated genes | 144 |
| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -96
Score: 4.4 Sequence: AAATATTACCCCGATCACATAA
Locus tag: SVI_0086
|
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| SVI_0086 | -96 | 4.4 | AAATATTACCCCGATCACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cytcB | ||||
| Ortholog function: Cytochrome c4 | ||||
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella oneidensis MR-1 | SO4666 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3908 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp W3-18-1 | Sputw3181_0043 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp ANA-3 | Shewana3_4111 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-4 | Shewmr4_3907 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella sp MR-7 | Shewmr7_3999 | -95 | 4.4 | AAATATTACCCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella baltica OS155 | Sbal_0051 | -95 | 4.3 | AAATATTACTCCGATCACATTA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella denitrificans OS217 | Sden_3622 | -94 | 3.7 | AAATATTATTTCGAGCATAATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3945 | -181 | 4.3 | AAATATTAGCCTGATCACATTA |
| Shewanella amazonensis SB2B | Sama_0091 | -95 | 3.7 | AAATATTGCCCCGATCACATAT |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella loihica PV-4 | Shew_3716 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella pealeana ATCC 700345 | Spea_0100 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4222 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella piezotolerans WP3 | swp_5075 | -95 | 4.4 | AAATATTACCCCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella sediminis HAW-EB3 | Ssed_0094 | -96 | 4.5 | AAATATTACCTCGATCACATAA |
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0057 | -157 | 4.2 | AAATATGATGTTTTGCACTTTA |
| -96 | 4.4 | AAATATTACCTCGATCACAATA | ||
|
Position: -94
Score: 4.7 Sequence: TTATGTGATCGGGGTAATATTT
Locus tag: SVI_0087
|
||||
| SVI_0087 | -94 | 4.7 | TTATGTGATCGGGGTAATATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: engB | ||||
| Ortholog function: GTP-binding protein EngB | ||||
| Shewanella oneidensis MR-1 | SO4667 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3907 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp W3-18-1 | Sputw3181_0044 | -96 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella sp ANA-3 | Shewana3_4110 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-4 | Shewmr4_3906 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella sp MR-7 | Shewmr7_3998 | -96 | 4.7 | TAATGTGATCGGGGTAATATTT |
| Shewanella baltica OS155 | Sbal_0052 | -95 | 4.6 | TAATGTGATCGGAGTAATATTT |
| Shewanella denitrificans OS217 | Sden_3621 | -182 | 3.8 | TATTATGCTCGAAATAATATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3944 | -104 | 4.7 | TAATGTGATCAGGCTAATATTT |
| Shewanella amazonensis SB2B | Sama_0092 | -96 | 4.1 | ATATGTGATCGGGGCAATATTT |
| Shewanella loihica PV-4 | Shew_3715 | -95 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella pealeana ATCC 700345 | Spea_0101 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_4221 | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella piezotolerans WP3 | swp_5074a | -96 | 4.7 | TTATGTGATCGGGGTAATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0095 | -95 | 4.7 | TTATGTGATCGAGGTAATATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0058 | -110 | 4.8 | TATTGTGATCGAGGTAATATTT |
|
Position: -190
Score: 3.9 Sequence: ATTTGAGAGCTAGTTATCAATA
Position: -140
Score: 3.7 Sequence: TATTTTGAACTAGGTCAATGTT
Locus tag: SVI_0139
|
||||
| SVI_0139 | -190 | 3.9 | ATTTGAGAGCTAGTTATCAATA | |
| -140 | 3.7 | TATTTTGAACTAGGTCAATGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: prlC | ||||
| Ortholog function: Oligopeptidase A (EC 3.4.24.70) | ||||
| Shewanella oneidensis MR-1 | SO4699 | -136 | 4.2 | AATTGAGAACTGGCTCACTTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0087 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp W3-18-1 | Sputw3181_3978 | -178 | 4.3 | AATTGAGAACTAGTTCACTTTT |
| Shewanella sp ANA-3 | Shewana3_4051 | -136 | 4.6 | AATTGTGAACTGGTTCGCTTTT |
| Shewanella sp MR-4 | Shewmr4_3842 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella sp MR-7 | Shewmr7_3935 | -136 | 4.3 | AATTGTGAACTGAGTCGCTTTT |
| Shewanella baltica OS155 | Sbal_0124 | -136 | 4.3 | AAATGCGAACGAGTTCACTTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3874 | -226 | 4 | AATTGGGATCTTAGTCACTCTA |
| Shewanella loihica PV-4 | Shew_3657 | -247 | 3.8 | ATTTGCGATCCGCTTGGCAATA |
| Shewanella pealeana ATCC 700345 | Spea_4065 | -143 | 3.9 | AAACTTGATTAAGATCGCGGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_0193 | -192 | 4.4 | ATTTGCGACGTGGTTTACAATA |
| -142 | 4.2 | AAATTTGATCTAGATCCTAGAT | ||
| Shewanella piezotolerans WP3 | swp_4926 | -311 | 3.7 | ATTTGCGAGGCGCTTTGCAATA |
| -261 | 3.6 | AAAATTGACTTTAGTCAAAGAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0145 | -210 | 4.1 | ATTTGAGAAGTAATTCTCAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0124 | -172 | 4.2 | TTTTTTGAGCTGGGTCAAAGTA |
|
Position: -337
Score: 4.4 Sequence: AAAAGTGATCTTGATCAATATT
Locus tag: SVI_0191
|
||||
| SVI_0191 | -337 | 4.4 | AAAAGTGATCTTGATCAATATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4606 | ||||
| Ortholog function: cytochrome c oxidase polypeptide II (EC 1.9.3.1) | ||||
| Shewanella oneidensis MR-1 | SO4606 | -317 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3782 | -309 | 4.4 | ATAAGTGATCTTGATCAATATT |
| Shewanella sp W3-18-1 | Sputw3181_0133 | -309 | 4.4 | ATAAGTGATCTTGATCAATATT |
| Shewanella sp ANA-3 | Shewana3_3991 | -318 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella sp MR-4 | Shewmr4_3791 | -318 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella sp MR-7 | Shewmr7_3864 | -317 | 4.2 | AGAAGTGATCTTGATCAATTTT |
| Shewanella baltica OS155 | Sbal_0154 | -317 | 4.4 | ATAAGTGATCTTGATCAATATT |
| Shewanella denitrificans OS217 | Sden_3517 | -316 | 4.4 | AAAAGTGATCTTGATCAATATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0258 | -321 | 3.9 | CAAAGTGATCTTGATCAATGTT |
| Shewanella amazonensis SB2B | Sama_3483 | -318 | 4.4 | TAAAGTGATCTTGATCAATATT |
| Shewanella loihica PV-4 | Shew_0125 | -321 | 4.4 | AAAAGTGATCTTGATCAATATT |
| -264 | 4 | TTATTTGTTATATCGCACAATT | ||
|
Position: -114
Score: 5.1 Sequence: TATTGTGATCAGCATCAAACAA
Locus tag: SVI_0266
|
||||
| SVI_0266 | -114 | 5.1 | TATTGTGATCAGCATCAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lpdA | ||||
| Ortholog function: Dihydrolipoamide dehydrogenase (EC 1.8.1.4) | ||||
| Shewanella oneidensis MR-1 | SO0426 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella putrefaciens CN-32 | Sputcn32_3415 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp W3-18-1 | Sputw3181_0528 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp ANA-3 | Shewana3_0428 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp MR-4 | Shewmr4_0430 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella sp MR-7 | Shewmr7_3597 | -113 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella baltica OS155 | Sbal_3911 | -111 | 4.7 | TATTGTGATCAGTATCAAACAC |
| Shewanella frigidimarina NCIMB 400 | Sfri_3775 | -168 | 5.1 | TATTGTGATCGGTTTCAAACAA |
| Shewanella pealeana ATCC 700345 | Spea_0421 | -128 | 4.5 | GATTGTGATCAGCATCAAACAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0478 | -130 | 4.6 | GATTGTGATCCGTATCAAACAA |
| Shewanella piezotolerans WP3 | swp_4749 | -113 | 4.5 | GATTGTGATCAGTATCAAACAA |
|
Position: -296
Score: 4.5 Sequence: AAGTTTGAACCAGATCACATTC
Locus tag: SVI_0270
|
||||
| SVI_0270 | -296 | 4.5 | AAGTTTGAACCAGATCACATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yniC | ||||
| Ortholog function: 2-deoxyglucose-6-phosphate hydrolase YniC | ||||
| Shewanella oneidensis MR-1 | SO0431 | -302 | 3.9 | AAGTATGAATCAGGTCACACTC |
| -118 | 3.8 | TAACGAAATGCTTTTCACAGTA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3410 | -316 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_0533 | -316 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp ANA-3 | Shewana3_0432 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp MR-4 | Shewmr4_0436 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella sp MR-7 | Shewmr7_3593 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella baltica OS155 | Sbal_3906 | -315 | 3.9 | AAGTATGAATCAGGTCACACTC |
| Shewanella denitrificans OS217 | Sden_3378 | -316 | 4 | AAGTATGAATCGGCTCACACTG |
| Shewanella frigidimarina NCIMB 400 | Sfri_3772 | -288 | 4.3 | AAGTATGAATCAGCTCACACTA |
| Shewanella amazonensis SB2B | Sama_0381 | -255 | 4 | AAGTATGAATCAGCTCACACTC |
| Shewanella loihica PV-4 | Shew_3425 | -295 | 4.1 | AAGTATGAATCAGATCACACTC |
| Shewanella pealeana ATCC 700345 | Spea_0424 | -286 | 4.3 | AAGTATGAATCCGATCACACTT |
| -178 | 4.1 | AAACTTGATCTAAATTATATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0481 | -286 | 4.5 | AAGTATGAATCCGATCACATTT |
| -178 | 3.7 | AACCTTGATCTAAATTATATAA | ||
| Shewanella piezotolerans WP3 | swp_4741 | -283 | 4.4 | AAGTATGAATCAGATCACACTT |
| -177 | 3.7 | AACACTGAGATTAATCACATAA | ||
| -101 | 3.7 | TTTCGTAAAGCTAAACACAATA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0437 | -296 | 4.2 | AAGTTTGAATCAGATCACACTC |
| Shewanella woodyi ATCC 51908 | Swoo_0284 | -296 | 4.2 | AAGTTTGAATCAGATCACACTC |
|
Position: -142
Score: 4.7 Sequence: GAATGTGATCTGGTTCAAACTT
Locus tag: SVI_0271
|
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| SVI_0271 | -142 | 4.7 | GAATGTGATCTGGTTCAAACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: acnB | ||||
| Ortholog function: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) | ||||
| Shewanella oneidensis MR-1 | SO0432 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3409 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp W3-18-1 | Sputw3181_0534 | -141 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp ANA-3 | Shewana3_0433 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp MR-4 | Shewmr4_0437 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella sp MR-7 | Shewmr7_3592 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella baltica OS155 | Sbal_3905 | -66 | 4.1 | GAGTGTGACCTGATTCATACTT |
| Shewanella denitrificans OS217 | Sden_3377 | -139 | 4.1 | CAGTGTGAGCCGATTCATACTT |
| -67 | 3.9 | AATTGTTAGCCTTATCACTATG | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3771 | -139 | 4.6 | TAGTGTGAGCTGATTCATACTT |
| Shewanella amazonensis SB2B | Sama_0382 | -138 | 4 | GAGTGTGAGCTGATTCATACTT |
| Shewanella loihica PV-4 | Shew_3424 | -140 | 4.3 | GAGTGTGATCTGATTCATACTT |
| Shewanella pealeana ATCC 700345 | Spea_0425 | -268 | 4 | TTATATAATTTAGATCAAGTTT |
| -160 | 4.8 | AAGTGTGATCGGATTCATACTT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0482 | -247 | 3.7 | TTATATAATTTAGATCAAGGTT |
| -139 | 5 | AAATGTGATCGGATTCATACTT | ||
| Shewanella piezotolerans WP3 | swp_4740 | -245 | 3.9 | TTATGTGATTAATCTCAGTGTT |
| -139 | 4.9 | AAGTGTGATCTGATTCATACTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0438 | -141 | 4.4 | GAGTGTGATCTGATTCAAACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0285 | -139 | 4.4 | GAGTGTGATCTGATTCAAACTT |
|
Position: -238
Score: 4.3 Sequence: TAATTTGAGGATTATCTCATTT
Locus tag: SVI_0408
|
||||
| SVI_0408 | -238 | 4.3 | TAATTTGAGGATTATCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sama_3096 | ||||
| Ortholog function: Outer membrane lipoprotein omp16 precursor | ||||
| Shewanella amazonensis SB2B | Sama_3096 | -197 | 4 | TAATGGTATTAATATCAAATAT |
| -40 | 3.7 | AGTCGTTATACTGGCCACAAAA | ||
|
Position: -160
Score: 3.9 Sequence: TTACGTGACGAAGTGCGAATTT
Position: -99
Score: 5 Sequence: AAATTTGATCTTGTTCAAATAA
Locus tag: SVI_0480
|
||||
| SVI_0480 | -160 | 3.9 | TTACGTGACGAAGTGCGAATTT | |
| -99 | 5 | AAATTTGATCTTGTTCAAATAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sden_3210 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella denitrificans OS217 | Sden_3210 | -122 | 4.3 | AAGCGTGAACAGCATCACGTAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3316 | -160 | 4.3 | ATAAGTGATCTAGTACTCACTT |
| -99 | 4.2 | AAACATGATCTGGTTCAAATCA | ||
| Shewanella amazonensis SB2B | Sama_3031 | -165 | 3.9 | TAGAGTGATCCTCTGCAAAGAA |
| -104 | 4.8 | AATTATGATGCAATTCAAATAA | ||
| Shewanella loihica PV-4 | Shew_0560 | -99 | 4.1 | AACTATGACATTGTTCAAAAAA |
| Shewanella pealeana ATCC 700345 | Spea_3546 | -105 | 4.3 | AAGTTTGACTGCGTTCAAATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_3640 | -165 | 3.8 | TTACGTGATCGAGCGCTAGTTT |
| -104 | 4.3 | AAGTTTGACAGTGTTCAAATAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_0791 | -164 | 3.8 | AAGTGTGATCTGACGCCGATTT |
| -103 | 3.9 | AACTTTGAACTTGTTCAAGTAT | ||
| Shewanella woodyi ATCC 51908 | Swoo_4177 | -44 | 4.5 | AAGTTTGAGCTTGTTCAAATAT |
|
Position: -245
Score: 3.7 Sequence: TTATTTGCTTTTTATCATTTAT
Position: -182
Score: 3.8 Sequence: TAATGTGCTGTGAAGCCTATTT
Position: -130
Score: 4.1 Sequence: TACTATGATCTGCTTCTAATTT
Locus tag: SVI_0489
|
||||
| SVI_0489 | -245 | 3.7 | TTATTTGCTTTTTATCATTTAT | |
| -182 | 3.8 | TAATGTGCTGTGAAGCCTATTT | ||
| -130 | 4.1 | TACTATGATCTGCTTCTAATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: petA | ||||
| Ortholog function: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) | ||||
| Shewanella oneidensis MR-1 | SO0608 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3276 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_0665 | -130 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -101 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp ANA-3 | Shewana3_0601 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-4 | Shewmr4_0602 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella sp MR-7 | Shewmr7_3428 | -132 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -103 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella baltica OS155 | Sbal_0562 | -131 | 3.7 | CACTATGATCTGCTTCTAATTT |
| -102 | 3.7 | TAATGAGCCCCGCTTCAAACTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_3307 | -129 | 3.8 | CACTATGATCTGGTTCTAATTT |
| Shewanella loihica PV-4 | Shew_0570 | -130 | 4.1 | TACTATGATCTGCTTCTAATTT |
| -101 | 3.9 | TAATGAGCCCCGCCTCAAATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_3536 | -78 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3630 | -128 | 4.6 | AACTATGATCTGGCTCAAATTT |
| Shewanella piezotolerans WP3 | swp_0793 | -131 | 4.2 | AACTATGATCTGGTTCTAATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0801 | -132 | 4.4 | TACTATGATCAAGCTCAAATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4166 | -129 | 3.8 | TACTATGATCTGCTTCTGATTT |
|
Position: -138
Score: 4 Sequence: AACTGGTATTCTGATCACATTT
Locus tag: SVI_0497
|
||||
| SVI_0497 | -138 | 4 | AACTGGTATTCTGATCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: astC | ||||
| Ortholog function: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81) | ||||
| Shewanella oneidensis MR-1 | SO0617 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_0645 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_3529 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sp ANA-3 | Shewana3_0610 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella sp MR-4 | Shewmr4_0611 | -142 | 4 | AACTGGTATTTTGATCACAATT |
| Shewanella sp MR-7 | Shewmr7_3419 | -308 | 3.8 | AATTGTGTAGTTATTCATATTC |
| Shewanella baltica OS155 | Sbal_0571 | -142 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella denitrificans OS217 | Sden_3193 | -136 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3299 | -137 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella amazonensis SB2B | Sama_3011 | -142 | 4 | AACTGGTATTTCGATCACAATT |
| Shewanella loihica PV-4 | Shew_0578 | -140 | 3.8 | AACTGGTATTTTGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_3516 | -138 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3610 | -138 | 3.7 | AACTGGCATTCTGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0747 | -140 | 4.1 | AACTGGTATTTTGATCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0809 | -141 | 4.1 | AACTGGTATTTTGATCACATTT |
| -121 | 3.9 | TTTCGTTATTAATGTCACTTAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0655 | -172 | 4.3 | ATATGTGCTGCTGATCTTATTT |
|
Position: -171
Score: 3.6 Sequence: ATAGTTGACTTATATCACTGAT
Locus tag: SVI_0504
|
||||
| SVI_0504 | -171 | 3.6 | ATAGTTGACTTATATCACTGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: crp | ||||
| Ortholog function: Cyclic AMP receptor protein Crp | ||||
| Shewanella oneidensis MR-1 | SO0624 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0652 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp W3-18-1 | Sputw3181_3522 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp ANA-3 | Shewana3_0617 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-4 | Shewmr4_0618 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella sp MR-7 | Shewmr7_3412 | -174 | 3.5 | TTAGTTGACTAATATCACTAAA |
| Shewanella baltica OS155 | Sbal_0578 | -174 | 3.7 | TTAGTTGACTTAAATCACTAAA |
| Shewanella denitrificans OS217 | Sden_3190 | -94 | 3.6 | AAACACGATCTTGGTCAAAGTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3292 | -97 | 4 | AAATACGATCTCTATCAAAGTT |
| Shewanella amazonensis SB2B | Sama_3004 | -96 | 3.8 | AATTTCGATCTGCATCATGGTT |
| Shewanella loihica PV-4 | Shew_0585 | -238 | 4 | AGATGTGATATGGGCAACATTG |
| Shewanella pealeana ATCC 700345 | Spea_3509 | -225 | 3.6 | AGATGTGATATAAGCCTAATTG |
| Shewanella halifaxensis HAW-EB4 | Shal_3603 | -226 | 3.5 | AGATGTGATACAAGCCTAATTG |
| Shewanella piezotolerans WP3 | swp_0755 | -309 | 4.2 | TTTATTGATAAGGTTCAAAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_3873 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0662 | -173 | 3.8 | TTAGTTGACTTATATCACTAAT |
|
Position: -295
Score: 4 Sequence: ATCAGTGATATAAGTCAACTAT
Locus tag: SVI_0505
|
||||
| SVI_0505 | -295 | 4 | ATCAGTGATATAAGTCAACTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sel1 | ||||
| Ortholog function: Sel1 domain protein repeat-containing protein precursor | ||||
| Shewanella oneidensis MR-1 | SO0625 | -267 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0653 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp W3-18-1 | Sputw3181_3521 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp ANA-3 | Shewana3_0618 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp MR-4 | Shewmr4_0619 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella sp MR-7 | Shewmr7_3411 | -270 | 4.2 | TTTAGTGATATTAGTCAACTAA |
| Shewanella baltica OS155 | Sbal_0579 | -278 | 4.4 | TTTAGTGATTTAAGTCAACTAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3291 | -222 | 4.1 | AACTTTGATAGAGATCGTATTT |
| -147 | 4.3 | ATTTGTGATGACGGTCGACTTT | ||
| -38 | 4 | TTATTTAATCAGCTTCATAAAT | ||
| Shewanella amazonensis SB2B | Sama_3003 | -319 | 3.8 | AACCATGATGCAGATCGAAATT |
| Shewanella loihica PV-4 | Shew_0586 | -279 | 3.8 | ATTAGTAATATATGTCAACTAA |
| Shewanella piezotolerans WP3 | swp_0756 | -153 | 3.8 | TTTTTTGAACCTTATCAATAAA |
| Shewanella sediminis HAW-EB3 | Ssed_3872 | -296 | 4.3 | ATTAGTGATATAAGTCAACTAA |
| Shewanella woodyi ATCC 51908 | Swoo_0663 | -298 | 4.3 | ATTAGTGATATAAGTCAACTAA |
|
Position: -129
Score: 4.1 Sequence: TTTTTTGATCTAGCGCAATTTT
Position: -110
Score: 4.6 Sequence: TTTTGTGAATCTCCTAACATTT
Locus tag: SVI_0526
|
||||
| SVI_0526 | -129 | 4.1 | TTTTTTGATCTAGCGCAATTTT | |
| -110 | 4.6 | TTTTGTGAATCTCCTAACATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydD | ||||
| Ortholog function: Transport ATP-binding protein CydD | ||||
| Shewanella oneidensis MR-1 | SO3780 | -191 | 4.4 | TTTATTGATCAGCATCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3106 | -169 | 4.7 | TTTTGTGAATCGGTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0838 | -169 | 4.7 | TTTTGTGAATCGGTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_0812 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_3127 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_0840 | -187 | 4.4 | TTTATTGATCTTTATCTCATTT |
| -167 | 4.5 | TTTTGTGAATAGGCTAACAAAA | ||
| Shewanella baltica OS155 | Sbal_3463 | -170 | 4.3 | TTTTGTGAGTCTGCTAGCAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3213 | -214 | 4.2 | TATTGTGTTGCAATTAACAATG |
| -104 | 5 | AAATGTGAATCAGATAACATTT | ||
| Shewanella amazonensis SB2B | Sama_2679 | -137 | 4.2 | TTTTTTGATCCAGCGCAAATTC |
| -118 | 4.2 | TTCTGTGAATCCCCTAACAAAT | ||
| Shewanella loihica PV-4 | Shew_0613 | -129 | 4.5 | TTTTTTGATCTAGCTCAATTTT |
| -110 | 4.8 | TTTTGTGAGCCTAATAACAATT | ||
| Shewanella pealeana ATCC 700345 | Spea_3494 | -185 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -166 | 4.4 | TTTTGTGAGTCCGATAGCAAAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_3589 | -233 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -214 | 4.9 | TTTTGTGAGTCCGATAACATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_3849 | -139 | 4.1 | AAAATTGATCTAGCTCAATTTT |
| -120 | 4.7 | TTTTGTGAATCCGTTAACAATT | ||
| Shewanella woodyi ATCC 51908 | Swoo_0710 | -149 | 4.1 | TTTATTGATCTAGCTCAATTTT |
| -130 | 4.7 | TTTTGTGAATCTCTTAACATTT | ||
|
Position: -161
Score: 4.2 Sequence: AATAGTGTCGTTCGTCACATTT
Locus tag: SVI_0529
|
||||
| SVI_0529 | -161 | 4.2 | AATAGTGTCGTTCGTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3774 | ||||
| Ortholog function: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) | ||||
| Shewanella oneidensis MR-1 | SO3774 | -146 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3099 | -128 | 3.8 | GATAGTGTTGTCCGTCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_0845 | -128 | 3.8 | GATAGTGTTGTCCGTCACATTT |
| Shewanella sp ANA-3 | Shewana3_0819 | -131 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella sp MR-4 | Shewmr4_3122 | -132 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella sp MR-7 | Shewmr7_0850 | -131 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella baltica OS155 | Sbal_3458 | -128 | 4.4 | TATAGTGTTGTCCGTCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0568 | -172 | 3.8 | TTCAGTGAACAAAATCAAACAA |
| -131 | 4.1 | TTGAGTGTCCAAGTTCACATTT | ||
| Shewanella loihica PV-4 | Shew_0615 | -146 | 3.9 | AAGAGTGTCCCTCGTCACATTT |
| Shewanella pealeana ATCC 700345 | Spea_3490 | -127 | 3.9 | ATTATTGCCACTCATCACATTT |
| Shewanella piezotolerans WP3 | swp_0809 | -137 | 3.9 | AAAGGTGTCGCTCGTCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3846 | -162 | 4 | AATGGTGTCCCTCGTCACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0714 | -176 | 3.9 | AAGAGTGTCCCTCGTCACATTT |
|
Position: -189
Score: 4.4 Sequence: AACTTAGATCTGGATCACATTA
Locus tag: SVI_0702
|
||||
| SVI_0702 | -189 | 4.4 | AACTTAGATCTGGATCACATTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0919 | ||||
| Ortholog function: Serine transporter, putative | ||||
| Shewanella sp ANA-3 | Shewana3_3365 | -307 | 3.9 | TTAATTGAAGCTGGTCGCATTT |
| Shewanella loihica PV-4 | Shew_0739 | -188 | 3.9 | AAGTTAGATTCGGCTCACAAAG |
| Shewanella piezotolerans WP3 | swp_4263 | -161 | 4 | ATAAGCGATATAGCTCCCAATA |
| Shewanella woodyi ATCC 51908 | Swoo_0863 | -196 | 4.2 | AACTGAGAGGTGGATCACATTG |
|
Position: -117
Score: 3.9 Sequence: TTGTGTGCACTGTGTCACGCTT
Locus tag: SVI_0719
|
||||
| SVI_0719 | -117 | 3.9 | TTGTGTGCACTGTGTCACGCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cadC | ||||
| Ortholog function: transcriptional regulator-related protein | ||||
| Shewanella oneidensis MR-1 | SO0936 | -117 | 4.6 | TTTATTGATGTAATTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_3347 | -118 | 4.6 | TTTATTGATGTGTTTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0779 | -118 | 4.5 | TTTATTGATGCATTTCACAGAT |
| Shewanella sp MR-7 | Shewmr7_3244 | -118 | 4.5 | TTTATTGATGCATTTCACAGAT |
| Shewanella loihica PV-4 | Shew_0757 | -115 | 4.3 | TTATGTGCTGATTGTCACGAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0849 | -117 | 4.4 | TAGTGTGCTAGACCTCACGAAA |
| Shewanella piezotolerans WP3 | swp_4239 | -248 | 4.2 | TAACGTGCTAAAGCTCACGAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0879 | -117 | 4.1 | TAACGTGTTCCTTGTCACGAAT |
| Shewanella woodyi ATCC 51908 | Swoo_0881 | -116 | 3.7 | ATATGAGCGCTAAATCACGCTT |
|
Position: -49
Score: 3.7 Sequence: AAATGTAATATCACTTACAGCT
Locus tag: SVI_0758
|
||||
| SVI_0758 | -49 | 3.7 | AAATGTAATATCACTTACAGCT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1064 | ||||
| Ortholog function: FOG: WD40 repeat | ||||
| Shewanella oneidensis MR-1 | SO1064 | -56 | 4.4 | AACTGTGATTAATTTCACTCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_3011 | -57 | 4.1 | AATAGTGATTAATCTCACTTTC |
| Shewanella sp W3-18-1 | Sputw3181_0938 | -57 | 4.1 | AATAGTGATTAATCTCACTTTC |
| Shewanella sp ANA-3 | Shewana3_0902 | -56 | 4.3 | AACTGTGATTAATCTCACTCTA |
| Shewanella woodyi ATCC 51908 | Swoo_0967 | -92 | 3.8 | ATATGATATTCCAATTACATTA |
|
Position: -264
Score: 3.9 Sequence: ATTTCTAATATCCATCAAAAAA
Locus tag: SVI_0783
|
||||
| SVI_0783 | -264 | 3.9 | ATTTCTAATATCCATCAAAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: argR | ||||
| Ortholog function: arginine pathway regulatory protein ArgR, repressor of arg regulon | ||||
| Shewanella oneidensis MR-1 | SO0769 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3220 | -259 | 4.2 | ATGTGTGACATGGATCTAGTTT |
| Shewanella sp W3-18-1 | Sputw3181_0721 | -259 | 4.2 | ATGTGTGACATGGATCTAGTTT |
| Shewanella sp ANA-3 | Shewana3_3510 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella sp MR-4 | Shewmr4_3340 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella sp MR-7 | Shewmr7_0613 | -266 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella baltica OS155 | Sbal_0608 | -270 | 4.5 | ATGTGTGACATGGATCTAATTT |
| Shewanella amazonensis SB2B | Sama_0671 | -262 | 4 | ATTTGTGAGGTAGATCCTCAAA |
| Shewanella loihica PV-4 | Shew_0866 | -282 | 4.6 | TTATGTGATATAGATCTAGATT |
| Shewanella piezotolerans WP3 | swp_4101 | -140 | 3.8 | ATTTATACTCTACATCATATTT |
| Shewanella sediminis HAW-EB3 | Ssed_0951 | -254 | 3.8 | ATTTTTGTTCTACATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1001 | -311 | 4.5 | TTTTGTGATGTAGGTCTACATT |
|
Position: -136
Score: 4 Sequence: TTTTTTGATGGATATTAGAAAT
Position: -46
Score: 4.3 Sequence: AAAATAGATCTATATCACAAAT
Locus tag: SVI_0784
|
||||
| SVI_0784 | -136 | 4 | TTTTTTGATGGATATTAGAAAT | |
| -46 | 4.3 | AAAATAGATCTATATCACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: mdh | ||||
| Ortholog function: malate dehydrogenase (EC 1.1.1.37) | ||||
| Shewanella oneidensis MR-1 | SO0770 | -47 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3219 | -46 | 4 | AAACTAGATCCATGTCACACAT |
| Shewanella sp W3-18-1 | Sputw3181_0722 | -46 | 4 | AAACTAGATCCATGTCACACAT |
| Shewanella sp ANA-3 | Shewana3_3509 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella sp MR-4 | Shewmr4_3339 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella sp MR-7 | Shewmr7_0614 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella baltica OS155 | Sbal_0609 | -46 | 4.3 | AAATTAGATCCATGTCACACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3173 | -45 | 4.2 | AATTTAGATCTATGTCACAAAC |
| Shewanella amazonensis SB2B | Sama_0672 | -46 | 3.8 | TTTGAGGATCTACCTCACAAAT |
| Shewanella loihica PV-4 | Shew_0867 | -47 | 4.5 | AATCTAGATCTATATCACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0903 | -46 | 3.9 | AAGATGGATCTGAATCACAAAA |
| Shewanella piezotolerans WP3 | swp_4100 | -46 | 3.9 | AAAACAGATCTAAATCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0952 | -136 | 4.1 | TTTATTGATGTAGAACAAAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1002 | -47 | 3.8 | AATGTAGACCTACATCACAAAA |
|
Position: -109
Score: 4.2 Sequence: TAACTCGATTGTGCTCACATTT
Locus tag: SVI_0919
|
||||
| SVI_0919 | -109 | 4.2 | TAACTCGATTGTGCTCACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1328 | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO1328 | -109 | 4 | AAAATCGATTTTGCTCACACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1139 | -109 | 3.8 | AATGGCGATTCTGCTCACACTC |
| Shewanella sp W3-18-1 | Sputw3181_3025 | -109 | 3.9 | AATGGCGATTCGGCTCACACTC |
| Shewanella sp ANA-3 | Shewana3_3046 | -109 | 3.9 | AAAATCGATTTTGCTCACAGTA |
| Shewanella sp MR-4 | Shewmr4_2868 | -109 | 4 | AAAATCGATTTTGCTCACACTA |
| Shewanella sp MR-7 | Shewmr7_2950 | -109 | 4 | AAAATCGATTTTGCTCACACAA |
| Shewanella loihica PV-4 | Shew_1035 | -110 | 3.8 | TTTTGGGCAGCGCTTCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_1016 | -89 | 4.8 | ATTTTTGATTCAGTTCACAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_1064 | -89 | 4.6 | ATTTTTGATTCAGTTCACAGTC |
| Shewanella woodyi ATCC 51908 | Swoo_1224 | -111 | 4.3 | ATTTTAGAGATAGCTCACATTT |
|
Position: -162
Score: 4.5 Sequence: TCATTTGACCGAGATCACAAAT
Locus tag: SVI_0920
|
||||
| SVI_0920 | -162 | 4.5 | TCATTTGACCGAGATCACAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaC | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella oneidensis MR-1 | SO1329 | -162 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1140 | -101 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3024 | -101 | 4.7 | TGTATTGATCCAGATCACAAAT |
| Shewanella sp ANA-3 | Shewana3_3045 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella sp MR-4 | Shewmr4_2867 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella sp MR-7 | Shewmr7_2949 | -162 | 4.4 | TGGATTGATCCAGATCACAAAT |
| Shewanella baltica OS155 | Sbal_1182 | -101 | 4.7 | TAGATTGATCCAGATCACAAAT |
| Shewanella denitrificans OS217 | Sden_2784 | -157 | 4.8 | TGAATTGATCTAGATCACATTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2947 | -158 | 4.4 | TCTATTGATCTAAATCACAAAT |
| Shewanella amazonensis SB2B | Sama_0861 | -102 | 4.2 | TGAATTGATTCAGATCACGTTA |
| Shewanella loihica PV-4 | Shew_1036 | -162 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella pealeana ATCC 700345 | Spea_1019 | -100 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1065 | -99 | 5.1 | TTATTTGACTTAGATCACAAAT |
| Shewanella piezotolerans WP3 | swp_3798 | -98 | 4.6 | TCATTTGACTTAGATCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1130 | -103 | 4.3 | TCATTTGACAAAGATCACAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_1225 | -96 | 4.3 | TCATTTGACTAAGATCACAAAT |
|
Position: -258
Score: 3.8 Sequence: TTCTATTATCTTACTCACCTAA
Position: -120
Score: 3.8 Sequence: TAAATTGATCTAGCGCATAGTT
Position: -105
Score: 3.5 Sequence: CATAGTTATCTTCATTAAAATA
Locus tag: SVI_0962
|
||||
| SVI_0962 | -258 | 3.8 | TTCTATTATCTTACTCACCTAA | |
| -120 | 3.8 | TAAATTGATCTAGCGCATAGTT | ||
| -105 | 3.5 | CATAGTTATCTTCATTAAAATA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hcp | ||||
| Ortholog function: Hydroxylamine reductase (EC 1.7.-.-) | ||||
| Shewanella oneidensis MR-1 | SO1363 | -124 | 4.2 | TAAAGTGATCTTTCTCTAAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_1174 | -124 | 4.3 | TAAGGTGATAACCCTCGCAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2990 | -124 | 4.3 | TAAGGTGATAACCCTCGCAAAT |
| Shewanella sp MR-4 | Shewmr4_2832 | -124 | 4 | TAAGGTGATCTCCCTCTAAGAT |
| Shewanella sp MR-7 | Shewmr7_2914 | -124 | 3.6 | CAAGGTGATCTCTCTCTAAGAT |
| Shewanella baltica OS155 | Sbal_1216 | -124 | 4.1 | TAAGGTGATCGTTCTCTAATAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_3609 | -125 | 4 | GAAGGTGATGTGGCTCATAAAA |
| Shewanella amazonensis SB2B | Sama_0895 | -113 | 3.6 | TAAGATGATCTGCTTCAAGGAA |
| Shewanella loihica PV-4 | Shew_1069 | -125 | 4.5 | TAATTTGATCCGCTTCATAGTT |
| Shewanella pealeana ATCC 700345 | Spea_1055 | -125 | 4.5 | AAAAGTGATCTCTTTCATAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1103 | -96 | 4.3 | TAAGGTGATCTCTTTCATGTTT |
| Shewanella piezotolerans WP3 | swp_3762 | -42 | 4.4 | TAAGGTGATCTCTTTCATAGTT |
| Shewanella sediminis HAW-EB3 | Ssed_1165 | -170 | 3.4 | TAATGCAATTGGTATTATAATT |
| Shewanella woodyi ATCC 51908 | Swoo_1260 | -125 | 4.2 | GAATTTGATCTGTCTCAAACTT |
|
Position: -77
Score: 4.7 Sequence: AAACGTGATCTAGATCACGACT
Locus tag: SVI_0968
|
||||
| SVI_0968 | -77 | 4.7 | AAACGTGATCTAGATCACGACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: yfiA-2 | ||||
| Ortholog function: Ribosome hibernation protein YfiA | ||||
| Shewanella oneidensis MR-1 | SO3422 | -78 | 4.7 | AAGTGTGATTTAACTCTCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2740 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1272 | -77 | 5.1 | TTTTGTGATTTAGATCTCGTTT |
| Shewanella sp ANA-3 | Shewana3_1133 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-4 | Shewmr4_1132 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella sp MR-7 | Shewmr7_1203 | -78 | 5.1 | AAATGTGATTTAGATCTCGTTT |
| Shewanella baltica OS155 | Sbal_1221 | -77 | 5.2 | AAATGTGATCTAGATCTCGTTT |
| Shewanella denitrificans OS217 | Sden_2746 | -77 | 4.8 | AAGTGTGACTTTGATCACGCTT |
| -38 | 4.1 | TAATCTGAAGTTAAGCACATAA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2912 | -77 | 5 | AAGTGTGATGCAGATCACTATT |
| Shewanella amazonensis SB2B | Sama_0899 | -78 | 4.3 | AAACGTGATTTTACTCACGACT |
| Shewanella loihica PV-4 | Shew_1073 | -76 | 4.6 | AAAGTTGATCTAGATCACGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1060 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella halifaxensis HAW-EB4 | Shal_4284 | -83 | 4.6 | AAACATGACCTAGATCACACTA |
| -58 | 3.8 | TAATGTGATTGGACTATTGTAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_1108 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella piezotolerans WP3 | swp_3757 | -76 | 4.6 | AAACGTGATTTAGATCACGACT |
| Shewanella sediminis HAW-EB3 | Ssed_1169 | -222 | 3.8 | TTTTGAGAGGCAAATAAAAAAA |
| -76 | 4.6 | AAACGTGATTTAGATCACGACT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1264 | -76 | 4.5 | AAACGTGATCAAGATCACGACT |
|
Position: -247
Score: 5 Sequence: AGTCGTGATCTAGATCACGTTT
Locus tag: SVI_0969
|
||||
| SVI_0969 | -247 | 5 | AGTCGTGATCTAGATCACGTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3421 | ||||
| Ortholog function: b-type cytochrome, putative | ||||
| Shewanella oneidensis MR-1 | SO3421 | -244 | 4.2 | AAACGAGAGTTAAATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2739 | -242 | 4.8 | AAACGAGATCTAAATCACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_1273 | -242 | 4.8 | AAACGAGATCTAAATCACAAAA |
| Shewanella sp ANA-3 | Shewana3_1134 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella sp MR-4 | Shewmr4_1133 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella sp MR-7 | Shewmr7_1204 | -241 | 4.9 | AAACGAGATCTAAATCACATTT |
| Shewanella baltica OS155 | Sbal_1222 | -244 | 5 | AAACGAGATCTAGATCACATTT |
| Shewanella denitrificans OS217 | Sden_2745 | -291 | 4.7 | AAGCGTGATCAAAGTCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2911 | -383 | 5.2 | AATAGTGATCTGCATCACACTT |
| Shewanella amazonensis SB2B | Sama_0900 | -234 | 4.2 | AGTCGTGAGTAAAATCACGTTT |
| Shewanella loihica PV-4 | Shew_1074 | -208 | 4.9 | AAACGTGATCTAGATCAACTTT |
| Shewanella pealeana ATCC 700345 | Spea_1061 | -255 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1109 | -255 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella piezotolerans WP3 | swp_3756 | -366 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1170 | -236 | 4.9 | AGTCGTGATCTAAATCACGTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1265 | -234 | 4.9 | AGTCGTGATCTTGATCACGTTT |
|
Position: -225
Score: 4.5 Sequence: CCATGTGATCAAGGTCACAATT
Locus tag: SVI_0989
|
||||
| SVI_0989 | -225 | 4.5 | CCATGTGATCAAGGTCACAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phk | ||||
| Ortholog function: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9) | ||||
| Shewanella oneidensis MR-1 | SO3542 | -95 | 4.2 | AATTTGGATGCAGAACACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1051 | -234 | 4 | TCATGTGATCAAGCCTACATTT |
| -95 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3114 | -234 | 4 | TCATGTGATCAAGCCTACATTT |
| -95 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella sp ANA-3 | Shewana3_3145 | -95 | 4 | AATTTGGATGCAGGGCACATTT |
| Shewanella sp MR-4 | Shewmr4_2965 | -95 | 4.3 | AATTTGGATGTAGAACACATTT |
| Shewanella sp MR-7 | Shewmr7_3047 | -95 | 4.3 | AATTTGGATGTAGAACACATTT |
| Shewanella baltica OS155 | Sbal_1046 | -235 | 4.4 | TCATGTGATCAAGCTCGCGTTT |
| -96 | 4.1 | AATTTGGATGTAGGGCACATTT | ||
| Shewanella denitrificans OS217 | Sden_2731 | -233 | 5 | CTTAGTGATCCAGTTCACATTA |
| -94 | 3.7 | AAGTTAGATCGGGGACACATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2898 | -233 | 4.5 | ACAAGTGATATCCATCACACTT |
| -95 | 3.8 | AAATTAGATAAAGGCCACATTA | ||
| Shewanella amazonensis SB2B | Sama_0915 | -240 | 4.1 | ACTCGTGATCAAGCTCACGGTT |
| -99 | 4.1 | AATTTGGATGTGGGGCACATTT | ||
| Shewanella loihica PV-4 | Shew_1091 | -238 | 4.6 | CCATGTGATACAGATCACAGTT |
| -97 | 4 | AAATAAGATATTGAACACATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_1076 | -235 | 3.9 | CTGAGCGATATAGATCACAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1124 | -56 | 4.3 | TATAGTGAGTTATATAAAATTT |
| Shewanella piezotolerans WP3 | swp_3738 | -237 | 4.5 | CTGAGTGATACAGATCACACAT |
| -96 | 3.8 | AAATAAGATACAGGACACATTT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1186 | -238 | 4.4 | CCATGTGACGCAGATCACAGTT |
| -97 | 4.2 | AAATAAGATGTAGAACACATTT | ||
| Shewanella woodyi ATCC 51908 | Swoo_1282 | -238 | 4.4 | TCGCGTGATCACGATCACACTT |
| -97 | 3.8 | AAACAAGATATAGAACACATTT | ||
|
Position: -211
Score: 4.6 Sequence: AATTGTGACCTTGATCACATGG
Locus tag: SVI_0990
|
||||
| SVI_0990 | -211 | 4.6 | AATTGTGACCTTGATCACATGG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3541 | ||||
| Ortholog function: sodium:alanine symporter family protein | ||||
| Shewanella baltica OS155 | Sbal_1047 | -220 | 3.9 | AAACGCGAGCTTGATCACATGA |
| Shewanella denitrificans OS217 | Sden_2730 | -140 | 4.6 | TAATGTGAACTGGATCACTAAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2897 | -306 | 4.2 | AAGTGTGATGGATATCACTTGT |
| Shewanella loihica PV-4 | Shew_1092 | -210 | 4.4 | AACTGTGATCTGTATCACATGG |
| Shewanella pealeana ATCC 700345 | Spea_1077 | -207 | 4.1 | AACTGTGATCTATATCGCTCAG |
| Shewanella piezotolerans WP3 | swp_3737 | -210 | 4.5 | ATGTGTGATCTGTATCACTCAG |
| Shewanella sediminis HAW-EB3 | Ssed_1187 | -214 | 4.2 | AACTGTGATCTGCGTCACATGG |
| Shewanella woodyi ATCC 51908 | Swoo_1283 | -215 | 4.2 | AAGTGTGATCGTGATCACGCGA |
|
Position: -173
Score: 4.5 Sequence: AAGCGTGATATTGCTCACTATT
Locus tag: SVI_1132
|
||||
| SVI_1132 | -173 | 4.5 | AAGCGTGATATTGCTCACTATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icd | ||||
| Ortholog function: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) | ||||
| Shewanella oneidensis MR-1 | SO1538 | -149 | 4.7 | ATTCGTGATATTGCTCACTATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1286 | -148 | 4.7 | AATCGTGATATCGCTCACTATT |
| Shewanella sp W3-18-1 | Sputw3181_2820 | -148 | 4.7 | AATCGTGATATCGCTCACTATT |
| Shewanella sp ANA-3 | Shewana3_2890 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella sp MR-4 | Shewmr4_2720 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella sp MR-7 | Shewmr7_2791 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella baltica OS155 | Sbal_1368 | -149 | 4.7 | AATCGTGATATTGCTCACTATT |
| Shewanella denitrificans OS217 | Sden_2561 | -143 | 3.8 | AAAAGGGATATTTCTCACTAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2779 | -148 | 4.7 | TAATGTGATAATACTCACTATT |
| Shewanella amazonensis SB2B | Sama_2423 | -89 | 4.5 | AATCGAGACATAAATCACATAA |
| Shewanella loihica PV-4 | Shew_2760 | -150 | 4.4 | AAACGTGAGATTGCTCACTATT |
| Shewanella pealeana ATCC 700345 | Spea_2980 | -146 | 4.2 | AAACGTGAGATCGCTCACTCTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3069 | -149 | 4.4 | AAACGTGAGATTGCTCACTATT |
| Shewanella piezotolerans WP3 | swp_3606 | -293 | 4.6 | AAACGTGAGATTGCTCACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_3318 | -151 | 4.7 | AAATGTGAGATTGCTCACTATT |
| Shewanella woodyi ATCC 51908 | Swoo_3466 | -148 | 4.3 | AAACGTGAGACTGCTCACTATT |
|
Position: -159
Score: 3.9 Sequence: AATAGTGAGTATCTTCACACCA
Position: -133
Score: 3.8 Sequence: AGATGAGATTAGAGTCAAACAT
Position: -92
Score: 3.7 Sequence: TATTAGGACCGAGAACACAAAT
Locus tag: SVI_1231
|
||||
| SVI_1231 | -159 | 3.9 | AATAGTGAGTATCTTCACACCA | |
| -133 | 3.8 | AGATGAGATTAGAGTCAAACAT | ||
| -92 | 3.7 | TATTAGGACCGAGAACACAAAT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: map | ||||
| Ortholog function: methionine aminopeptidase (EC 3.4.11.18) | ||||
| Shewanella pealeana ATCC 700345 | Spea_2886 | -104 | 4.2 | TAATTTGAAAAAAAGCACAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2982 | -92 | 3.7 | TAATATGAAAAAAAGCACAAAC |
| Shewanella piezotolerans WP3 | swp_3524 | -93 | 4.2 | TATTTTGAAAAAAAGCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_3162 | -91 | 3.9 | TATTGAGAGAGCAAACACAAAT |
|
Position: -320
Score: 3.9 Sequence: AATTGTGAATGGTATAAATTAA
Position: -197
Score: 3.8 Sequence: TGTTGTGATTCGCGTCACTTCG
Locus tag: SVI_1388
|
||||
| SVI_1388 | -320 | 3.9 | AATTGTGAATGGTATAAATTAA | |
| -197 | 3.8 | TGTTGTGATTCGCGTCACTTCG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cydA | ||||
| Ortholog function: cytochrome d ubiquinol oxidase, subunit I, CydA | ||||
| Shewanella oneidensis MR-1 | SO3286 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2641 | -204 | 4.3 | TAGTGTGACGCTTGTCCCAATA |
| Shewanella sp W3-18-1 | Sputw3181_1366 | -204 | 4.3 | TAGTGTGACGCTTGTCCCAATA |
| Shewanella sp ANA-3 | Shewana3_1241 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella sp MR-4 | Shewmr4_1239 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella sp MR-7 | Shewmr7_1310 | -203 | 4.2 | TAGTGTGACTAGGGTCTCAGTA |
| Shewanella baltica OS155 | Sbal_2979 | -207 | 4.4 | TAGTGTGACTCGCGTCTCAATA |
| Shewanella denitrificans OS217 | Sden_1274 | -157 | 4.1 | TAAATTGATCTAAATCAATTTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1142 | -240 | 4.2 | AAATCTAATGCTGGTCACATAA |
| Shewanella loihica PV-4 | Shew_1302 | -206 | 4.7 | TTTTGTGAGCCGCCTCTCAAAA |
| Shewanella pealeana ATCC 700345 | Spea_1318 | -235 | 4 | ATTCGGGATGGGTGTCACAAAG |
| Shewanella halifaxensis HAW-EB4 | Shal_1381 | -234 | 4.1 | ATTTGGGATGAGTATCACGGAA |
| Shewanella piezotolerans WP3 | swp_1469 | -231 | 4.2 | AGGTGAGACGGTGATCACAATA |
| Shewanella sediminis HAW-EB3 | Ssed_3118 | -203 | 4 | TAGTGTGAAGTTCGTCGTAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1565 | -204 | 3.8 | TTTTGTGAGATCGGTCGGAAAG |
|
Position: -309
Score: 4.5 Sequence: TTTTGTTAACTCCCTCACACTT
Locus tag: SVI_1531
|
||||
| SVI_1531 | -309 | 4.5 | TTTTGTTAACTCCCTCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: galU | ||||
| Ortholog function: UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) | ||||
| Shewanella amazonensis SB2B | Sama_2223 | -304 | 4.5 | TTTTGTTAACTGCCTCACGTTT |
|
Position: -76
Score: 4.7 Sequence: AAGTGTGAGGGAGTTAACAAAA
Locus tag: SVI_1532
|
||||
| SVI_1532 | -76 | 4.7 | AAGTGTGAGGGAGTTAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: phhA | ||||
| Ortholog function: Phenylalanine-4-hydroxylase (EC 1.14.16.1) | ||||
| Shewanella oneidensis MR-1 | SO1666 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1386 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAA |
| Shewanella sp W3-18-1 | Sputw3181_2715 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAA |
| Shewanella sp ANA-3 | Shewana3_2781 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella sp MR-4 | Shewmr4_2607 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella sp MR-7 | Shewmr7_2674 | -75 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella baltica OS155 | Sbal_1484 | -75 | 4.7 | AAGTGTGAGGGAGTTAACAAAT |
| Shewanella denitrificans OS217 | Sden_2595 | -61 | 4.1 | AATTGTGCGCCATGGCACACTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1328 | -74 | 4.5 | AACTGTGAGGGAGTTAACAAAA |
| Shewanella amazonensis SB2B | Sama_2222 | -76 | 4.6 | AAACGTGAGGCAGTTAACAAAA |
| Shewanella loihica PV-4 | Shew_1435 | -40 | 4.7 | AAGTGTGATCCTGTTAACAAAC |
| Shewanella pealeana ATCC 700345 | Spea_1448 | -126 | 4.9 | AACTGTGATCGGGTTAACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1531 | -86 | 4.7 | AACCGTGATCTAGTTAACAAAA |
| Shewanella piezotolerans WP3 | swp_1650 | -76 | 5 | AACTGTGATCTGGTTAACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_2930 | -75 | 4.8 | AACTGTGATGGAGTTAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1715 | -74 | 4.7 | AAGTGTGAAGTGGTTAACAAAA |
|
Position: -130
Score: 4.6 Sequence: TCATGTGATTTAGGTCACGCTA
Locus tag: SVI_1535
|
||||
| SVI_1535 | -130 | 4.6 | TCATGTGATTTAGGTCACGCTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fahA | ||||
| Ortholog function: Fumarylacetoacetate hydrolase family protein | ||||
| Shewanella oneidensis MR-1 | SO1670 | -200 | 5.1 | AAATGTGATTTTGTTCACGCTA |
| Shewanella putrefaciens CN-32 | Sputcn32_1389 | -229 | 5 | AAATGTGATTTGTGTCACGCTA |
| Shewanella sp W3-18-1 | Sputw3181_2712 | -229 | 5 | AAATGTGATTTGTGTCACGCTA |
| Shewanella sp ANA-3 | Shewana3_2778 | -197 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella sp MR-4 | Shewmr4_2604 | -196 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella sp MR-7 | Shewmr7_2671 | -196 | 5.1 | AAATGTGATTTTGCTCACGCTA |
| Shewanella baltica OS155 | Sbal_1487 | -235 | 5 | AAATGTGATTTTGGTCACGCTA |
| Shewanella denitrificans OS217 | Sden_2592 | -107 | 4.7 | AAATGTGATTTTGCGCACGCTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1331 | -116 | 4.1 | AAATGTGATTTGGTACTTACTA |
| Shewanella amazonensis SB2B | Sama_2219 | -111 | 5 | AATTGTGATTTGAGTCACGCTA |
| Shewanella loihica PV-4 | Shew_1438 | -130 | 4.4 | GAGTGTGATTTGTATCACGCTA |
| Shewanella pealeana ATCC 700345 | Spea_1451 | -158 | 5.3 | AAGTGTGATTTCGTTCACACTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1534 | -144 | 4.5 | CAGTGTGATTTATCTCACGCTA |
| Shewanella piezotolerans WP3 | swp_1653 | -140 | 5 | TAGTGTGATTTAGCTCACGCTA |
| Shewanella sediminis HAW-EB3 | Ssed_2927 | -116 | 4.1 | GAGCGTGATTCATGTCACACTA |
| Shewanella woodyi ATCC 51908 | Swoo_1718 | -133 | 5 | TATTGTGATTTGTGTCACGCTA |
|
Position: -155
Score: 4.8 Sequence: AAAAGTGATTAAGATCGCATTT
Locus tag: SVI_1569
|
||||
| SVI_1569 | -155 | 4.8 | AAAAGTGATTAAGATCGCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3119 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3119 | -166 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2489 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp W3-18-1 | Sputw3181_1519 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp ANA-3 | Shewana3_1429 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp MR-4 | Shewmr4_1376 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella sp MR-7 | Shewmr7_1441 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella baltica OS155 | Sbal_2792 | -171 | 4.5 | AATAGTGATAAAGATCGCGTTT |
| Shewanella amazonensis SB2B | Sama_2198 | -151 | 4.4 | AATAGTGATTAAGCTCGCGTTT |
| Shewanella pealeana ATCC 700345 | Spea_1466 | -148 | 4.1 | GAAAGTGATTTATATCGCGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1549 | -148 | 4.1 | GAAAGTGATTTATATCGCGTTT |
| Shewanella piezotolerans WP3 | swp_1671 | -220 | 3.8 | GAAAGTGACTTAAATCGCGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_2897 | -173 | 4.7 | TAAAGTGATTTAGATCGCGTTT |
| Shewanella woodyi ATCC 51908 | Swoo_1750 | -148 | 4.4 | TTAAGTGACTTAGATCGCGTTT |
|
Position: 20
Score: 3.9 Sequence: TTATTTGATTGTGGGCACAACA
Locus tag: SVI_1689
|
||||
| SVI_1689 | 20 | 3.9 | TTATTTGATTGTGGGCACAACA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2857 | ||||
| Ortholog function: sodium solute symporter family protein | ||||
| Shewanella oneidensis MR-1 | SO2857 | -105 | 4.8 | TATTGTGAGTAAGTTCGCAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_2358 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella sp W3-18-1 | Sputw3181_1651 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella sp ANA-3 | Shewana3_1575 | -105 | 4 | GGATGTGAGCCGCTTCGCAAAT |
| Shewanella sp MR-4 | Shewmr4_1514 | -105 | 3.9 | CCGTGTGAGGTATTTCGCAAAT |
| Shewanella sp MR-7 | Shewmr7_1581 | -105 | 3.9 | CCGTGTGAGGTATTTCGCAAAT |
| Shewanella baltica OS155 | Sbal_2638 | -75 | 4.2 | AGTCGTGATTGTGCTCACACCA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1547 | -237 | 4.9 | TTTTGTGATGCAGATCTCAATC |
|
Position: -227
Score: 4.4 Sequence: TTTTGCGACGAATATCACCTTT
Locus tag: SVI_1781
|
||||
| SVI_1781 | -227 | 4.4 | TTTTGCGACGAATATCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2757 | ||||
| Ortholog function: Histidine permease YuiF | ||||
| Shewanella oneidensis MR-1 | SO2757 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1598 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp W3-18-1 | Sputw3181_2424 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp ANA-3 | Shewana3_2542 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-4 | Shewmr4_2377 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella sp MR-7 | Shewmr7_2449 | -225 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella baltica OS155 | Sbal_1737 | -227 | 4.2 | ATTTAAGACCAATATCACATTT |
| Shewanella denitrificans OS217 | Sden_2092 | -208 | 4.3 | ATATGCGAGAGGGATCACAATC |
| Shewanella frigidimarina NCIMB 400 | Sfri_1454 | -191 | 3.5 | TTAAATAATAAGTTTCAAATAT |
| Shewanella amazonensis SB2B | Sama_2095 | -210 | 3.9 | AATTTGGAGGAATATCACACAA |
| Shewanella loihica PV-4 | Shew_1515 | -230 | 4 | ATTTGGGATCATTGTCACTTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1682 | -225 | 3.9 | ATTTGATATCAATATCACTTTT |
| Shewanella piezotolerans WP3 | swp_1820 | -77 | 4.1 | ATTTGAGAGCAATATCACTTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1847 | -226 | 4.5 | ATTTGGGATCAATATCACCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_2742 | -155 | 4 | TTTAGTGCTGTTATTTACACTT |
|
Position: -29
Score: 4.4 Sequence: AAAGGTGATATTCGTCGCAAAA
Locus tag: SVI_1782
|
||||
| SVI_1782 | -29 | 4.4 | AAAGGTGATATTCGTCGCAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Swoo_2741 | ||||
| Ortholog function: Alkyl hydroperoxide reductase subunit C-like protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_1599 | -183 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp W3-18-1 | Sputw3181_2423 | -183 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp ANA-3 | Shewana3_2541 | -167 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp MR-4 | Shewmr4_2376 | -167 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella sp MR-7 | Shewmr7_2448 | -167 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella baltica OS155 | Sbal_1738 | -183 | 4.6 | AAATGTGATATTGGTCTTAAAT |
| Shewanella denitrificans OS217 | Sden_2091 | -88 | 4.7 | GATTGTGATCCCTCTCGCATAT |
| Shewanella amazonensis SB2B | Sama_2094 | -115 | 4.3 | TTGTGTGATATTCCTCCAAATT |
| Shewanella loihica PV-4 | Shew_1516 | -105 | 4.1 | AAAAGTGACAATGATCCCAAAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1683 | -108 | 4.4 | AAAAGTGATATTGATATCAAAT |
| Shewanella piezotolerans WP3 | swp_1821 | -108 | 4.7 | AAAAGTGATATTGCTCTCAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_1848 | -106 | 4.4 | AAAGGTGATATTGATCCCAAAT |
|
Position: -274
Score: 3.5 Sequence: GTGTGTGATCTGGATCGATGAA
Locus tag: SVI_1785
|
||||
| SVI_1785 | -274 | 3.5 | GTGTGTGATCTGGATCGATGAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2753 | ||||
| Ortholog function: prolyl endopeptidase (EC 3.4.21.26) | ||||
| Shewanella oneidensis MR-1 | SO2753 | -235 | 4.7 | TTAAGTGATCTGCCTCACTTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1602 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp W3-18-1 | Sputw3181_2420 | -234 | 4.8 | TTAAGTGATCTAGCTCACTTAA |
| Shewanella sp ANA-3 | Shewana3_2536 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-4 | Shewmr4_2373 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella sp MR-7 | Shewmr7_2445 | -234 | 4.8 | TTAAGTGATCTGGCTCACTTAA |
| Shewanella baltica OS155 | Sbal_1741 | -233 | 4.7 | AAAGGTGATCTATATCACTTAA |
| Shewanella amazonensis SB2B | Sama_2091 | -226 | 4.7 | TTGTGTGATCTTGCGCACGTTA |
| Shewanella loihica PV-4 | Shew_1522 | -276 | 3.5 | ATTTGCGCTTGATTACGCAAAA |
| Shewanella pealeana ATCC 700345 | Spea_2569 | -251 | 3.9 | TAGTGTGGGTTTAGTCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1686 | -266 | 3.6 | TATTGCGGGGTTTGTCACGTTT |
| Shewanella piezotolerans WP3 | swp_1825 | -248 | 3.6 | TTGTGAGTCCTTAATCACGTTT |
| Shewanella sediminis HAW-EB3 | Ssed_1852 | -257 | 3.8 | AAGTGTGATCTTGGTCGGTAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2736 | -259 | 3.7 | TAGTGTGATCTAGGTTGGGTAA |
|
Position: -131
Score: 4.2 Sequence: AATTGTGATCTATGTGGAATAT
Locus tag: SVI_1817
|
||||
| SVI_1817 | -131 | 4.2 | AATTGTGATCTATGTGGAATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2637 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella amazonensis SB2B | Sama_2066 | -139 | 4 | ATTTGTGATCACTGTGGCAATT |
| Shewanella loihica PV-4 | Shew_1556 | -132 | 4.2 | AATTGTGATCGGCGTGGCAATT |
| Shewanella pealeana ATCC 700345 | Spea_2542 | -138 | 4.3 | ATTTGTGATTTGTCTGGCAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1712 | -140 | 4.1 | ATTTGTGAACTATCTGGCAATT |
| Shewanella piezotolerans WP3 | swp_1858 | -143 | 4.3 | ATTTGTGATCCATGTGGCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1878 | -136 | 4.4 | AATTGTGATCTGCGTGGCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2709 | -136 | 4.4 | AATTGTGATCTGTGTGGCAATT |
|
Position: -299
Score: 4.2 Sequence: TTTTATGATGTTGACCATAAAA
Position: -279
Score: 4.6 Sequence: AAACGTGATCTATCTCATAATG
Locus tag: SVI_1824
|
||||
| SVI_1824 | -299 | 4.2 | TTTTATGATGTTGACCATAAAA | |
| -279 | 4.6 | AAACGTGATCTATCTCATAATG | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: icd | ||||
| Ortholog function: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) | ||||
| Shewanella oneidensis MR-1 | SO2629 | -199 | 4.1 | AAATGTGATCTACACCTAAATG |
| Shewanella putrefaciens CN-32 | Sputcn32_2230 | -212 | 3.9 | AAATGTGATCTGTGCCTAAATG |
| Shewanella sp W3-18-1 | Sputw3181_1779 | -212 | 3.9 | AAATGTGATCTGTGCCTAAATG |
| Shewanella sp ANA-3 | Shewana3_1750 | -209 | 3.9 | AAATGTGATCTACGCCTAAATG |
| Shewanella sp MR-4 | Shewmr4_1606 | -208 | 3.9 | AAATGTGATCTACGCCTAAATG |
| Shewanella sp MR-7 | Shewmr7_1681 | -208 | 3.9 | AAATGTGATCTACGCCTAAATG |
| Shewanella baltica OS155 | Sbal_2475 | -212 | 3.9 | AAATGTGATCTGTGCCTAAATG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2257 | -242 | 4.6 | AATTGTGATCTGTACCTAATTT |
| Shewanella loihica PV-4 | Shew_1563 | -237 | 3.8 | ATTTATGATGTCGGCCAACTAA |
| -217 | 4.1 | AAATGTGATCGATAGCAAAACG | ||
| Shewanella pealeana ATCC 700345 | Spea_2535 | -195 | 4.2 | AAGTGTGATCTGCAGCTAACTA |
| Shewanella piezotolerans WP3 | swp_1868 | -21 | 4.2 | AAGTGTGATCCGCAACTAAATT |
| Shewanella sediminis HAW-EB3 | Ssed_1883 | -275 | 3.9 | AAGTGTGATCTGCGCCAAGTTG |
| Shewanella woodyi ATCC 51908 | Swoo_2702 | -304 | 3.9 | AAGTGTGATCTAAGCCAAGTTG |
|
Position: -64
Score: 5.1 Sequence: AATTGTGACTTTCATCACCTTT
Locus tag: SVI_1892
|
||||
| SVI_1892 | -64 | 5.1 | AATTGTGACTTTCATCACCTTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2871 | ||||
| Ortholog function: arsenate reductase (EC 1.20.4.1) | ||||
| Shewanella loihica PV-4 | Shew_1840 | -51 | 3.8 | CCCTGTGACTCGGCTCACCTTT |
| Shewanella pealeana ATCC 700345 | Spea_1970 | -64 | 4.8 | CATTGTGACTATGATCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_2329 | -64 | 5.1 | ATTTGTGACTCTGGTCACAAAT |
| Shewanella sediminis HAW-EB3 | Ssed_2438 | -64 | 5 | TTTTGTGACTTTGCTCACCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_2168 | -66 | 4.2 | CCTTGTGACTTCGCTCACCTTT |
|
Position: -123
Score: 3.8 Sequence: AAATGTGATATTCCCCTAAAAG
Locus tag: SVI_2017
|
||||
| SVI_2017 | -123 | 3.8 | AAATGTGATATTCCCCTAAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fumB | ||||
| Ortholog function: Fumarate hydratase class I, aerobic (EC 4.2.1.2) | ||||
| Shewanella oneidensis MR-1 | SO2222 | -105 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1807 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp W3-18-1 | Sputw3181_2218 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp ANA-3 | Shewana3_2302 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp MR-4 | Shewmr4_2124 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella sp MR-7 | Shewmr7_2200 | -104 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella baltica OS155 | Sbal_1918 | -103 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella denitrificans OS217 | Sden_1912 | -131 | 3.9 | AAATGTGATGTAGCCCCAAAAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_2156 | -122 | 4.6 | AAATGTGATGTAGCCCAAAAAG |
| Shewanella amazonensis SB2B | Sama_1688 | -144 | 4.2 | ACTTGTGATGTAGCCCAAAGAT |
| Shewanella loihica PV-4 | Shew_1904 | -111 | 3.9 | AAATGTGATGTTCCCCTAAAAG |
| -73 | 4.8 | TATTGTGAACGGATTCAAAAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2038 | -162 | 4.3 | AAATGTGATGTTTAACTCAAAC |
| Shewanella halifaxensis HAW-EB4 | Shal_2256 | -162 | 4.3 | AAATGTGATGTTTAACTCAAAC |
| Shewanella piezotolerans WP3 | swp_2633 | -162 | 4.4 | AAATGTGATGTTTAACTCAAAG |
| Shewanella sediminis HAW-EB3 | Ssed_2358 | -194 | 3.8 | AAATGTGATATTCCCCTAAAAG |
|
Position: -177
Score: 4.4 Sequence: TTTTTTGACATAGCTCAAGTAT
Locus tag: SVI_2171
|
||||
| SVI_2171 | -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccoN | ||||
| Ortholog function: Cbb3-type cytochrome c oxidase, subunit I, CcoN | ||||
| Shewanella oneidensis MR-1 | SO2364 | -173 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| -125 | 4.1 | AAATGTGAAGGATAACGCATTG | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1959 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp W3-18-1 | Sputw3181_2046 | -171 | 4.2 | TTTTTTGACATTGCTCAAGTAT |
| Shewanella sp ANA-3 | Shewana3_2107 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-4 | Shewmr4_2006 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella sp MR-7 | Shewmr7_1969 | -171 | 4.3 | TTTTTTGACATGGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_2201 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella baltica OS155 | Sbal_4487 | -173 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella denitrificans OS217 | Sden_1851 | -182 | 4.7 | TTTTTTGATGTAGCTCAAGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2010 | -186 | 4.4 | TTTTTTGACTTAGCTCAAGTAT |
| Shewanella amazonensis SB2B | Sama_1791 | -180 | 4.3 | TTTTTTGACACAGCTCAAGTAT |
| Shewanella loihica PV-4 | Shew_1985 | -178 | 4.5 | TTTTTTGATATTGCTCAAGTAT |
| Shewanella pealeana ATCC 700345 | Spea_2214 | -219 | 4.1 | TACCTTGATCTAGATCAACTTA |
| -176 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2197 | -221 | 4.5 | AGATTTGATCTAGATCAACTTT |
| -178 | 4.6 | TTTTTTGATATAGCTCAAGTAT | ||
| Shewanella piezotolerans WP3 | swp_2572 | -221 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -178 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_2211 | -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT |
| Shewanella woodyi ATCC 51908 | Swoo_2425 | -220 | 4.3 | TAGCTTGATCTAGATCAACTTT |
| -177 | 4.4 | TTTTTTGACATAGCTCAAGTAT | ||
|
Position: -172
Score: 3.8 Sequence: TGGTCTGACCTGTGTCGCATAA
Locus tag: SVI_2380
|
||||
| SVI_2380 | -172 | 3.8 | TGGTCTGACCTGTGTCGCATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2535 | ||||
| Ortholog function: Predicted glutamine amidotransferase | ||||
| Shewanella oneidensis MR-1 | SO2535 | -194 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1792 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp W3-18-1 | Sputw3181_2233 | -193 | 4.7 | TTTATTGATGGCGATCACAATT |
| Shewanella sp ANA-3 | Shewana3_2322 | -133 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-4 | Shewmr4_2145 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella sp MR-7 | Shewmr7_2222 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella baltica OS155 | Sbal_2305 | -193 | 4.4 | TTTGTTGATTGCGATCACAATT |
| Shewanella denitrificans OS217 | Sden_1765 | -204 | 3.7 | TATGATGATCCTATTCACAAGT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1870 | -203 | 3.9 | ATTATTGATCTCATTCACAAGA |
| Shewanella amazonensis SB2B | Sama_1869 | -195 | 3.9 | ATAAGCGATCCTGATCACAAGT |
| Shewanella loihica PV-4 | Shew_2107 | -191 | 4.6 | TTATATGACCATAATCACAATT |
| Shewanella pealeana ATCC 700345 | Spea_2392 | -196 | 4.4 | TTTTGAGTTCTATCTCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1891 | -199 | 4.2 | TTTTGAGGTTTATCTCACAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2000 | -191 | 4.5 | TTTATTGATCATAATCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2603 | -190 | 4.8 | TATATTGATCGATATCACAATT |
|
Position: -101
Score: 3.4 Sequence: TTATGCGACACAGGTCAGACCA
Position: -71
Score: 4.1 Sequence: AATTGTGATAATGATCGGCAAA
Locus tag: SVI_2381
|
||||
| SVI_2381 | -101 | 3.4 | TTATGCGACACAGGTCAGACCA | |
| -71 | 4.1 | AATTGTGATAATGATCGGCAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE2 | ||||
| Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Shewanella oneidensis MR-1 | SO2536 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1791 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp W3-18-1 | Sputw3181_2234 | -72 | 4.6 | AATTGTGATCGCCATCAATAAA |
| Shewanella sp ANA-3 | Shewana3_2323 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-4 | Shewmr4_2146 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella sp MR-7 | Shewmr7_2223 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella baltica OS155 | Sbal_2306 | -72 | 4.8 | AATTGTGATCGCAATCAACAAA |
| Shewanella denitrificans OS217 | Sden_1764 | -66 | 3.8 | ACTTGTGAATAGGATCATCATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_1869 | -67 | 3.8 | TCTTGTGAATGAGATCAATAAT |
| Shewanella amazonensis SB2B | Sama_1870 | -64 | 4.3 | ACTTGTGATCAGGATCGCTTAT |
| Shewanella loihica PV-4 | Shew_2108 | -71 | 4.9 | AATTGTGATTATGGTCATATAA |
| Shewanella pealeana ATCC 700345 | Spea_2393 | -70 | 4.5 | AATTGTGAGATAGAACTCAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1890 | -70 | 4.3 | AATTGTGAGATAAACCTCAAAA |
| Shewanella piezotolerans WP3 | swp_2312 | -97 | 3.5 | AATTGTGACGTAGACCCGCAAA |
| Shewanella sediminis HAW-EB3 | Ssed_1999 | -71 | 4.5 | AATTGTGATTATGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_2604 | -73 | 4.8 | AATTGTGATATCGATCAATATA |
|
Position: -151
Score: 5.1 Sequence: ATATGTGATGATGTTCAAAATT
Locus tag: SVI_2471
|
||||
| SVI_2471 | -151 | 5.1 | ATATGTGATGATGTTCAAAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD1 | ||||
| Ortholog function: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella oneidensis MR-1 | SO2581 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1761 | -154 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp W3-18-1 | Sputw3181_2264 | -154 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp ANA-3 | Shewana3_2386 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp MR-4 | Shewmr4_2177 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella sp MR-7 | Shewmr7_2254 | -155 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella baltica OS155 | Sbal_1864 | -156 | 5.1 | TTATGTGATGATGATCAAAATT |
| Shewanella denitrificans OS217 | Sden_1625 | -189 | 4.1 | TTATGTGATTATGGGCCCAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1733 | -165 | 4.7 | TTATGTGATTATGATCGAAAAT |
| Shewanella amazonensis SB2B | Sama_1934 | -140 | 4.8 | TTATGTGATGATTGTCAAAAAT |
| Shewanella loihica PV-4 | Shew_2188 | -149 | 4.9 | TTGTGTGATGATGTTCAAAATT |
| Shewanella pealeana ATCC 700345 | Spea_2448 | -156 | 5 | TTATGTGATGATAATCAAAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_1832 | -155 | 5 | TTATGTGATGATAATCAAAATT |
| Shewanella piezotolerans WP3 | swp_2289 | -153 | 5 | ATATGTGATGATAATCAAAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2523 | -151 | 5 | TTATGTGATGATGATCATAATT |
| Shewanella woodyi ATCC 51908 | Swoo_2110 | -153 | 5.1 | TTATGTGATGATGTTCAAAATT |
|
Position: -82
Score: 4.3 Sequence: AAGTGCGACTCAGATCTCATTA
Position: -42
Score: 3.7 Sequence: TAATATGATCTTCATTATTTTA
Locus tag: SVI_2538
|
||||
| SVI_2538 | -82 | 4.3 | AAGTGCGACTCAGATCTCATTA | |
| -42 | 3.7 | TAATATGATCTTCATTATTTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cdd | ||||
| Ortholog function: cytidine deaminase (EC 3.5.4.5) | ||||
| Shewanella oneidensis MR-1 | SO2791 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_1568 | -131 | 3.8 | TATGGTGAAATCGGTCAAATAC |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_2531 | -131 | 3.8 | TATGGTGAAATCGGTCAAATAC |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella sp ANA-3 | Shewana3_2573 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella sp MR-4 | Shewmr4_2411 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella sp MR-7 | Shewmr7_2481 | -82 | 4.1 | AAACGCGAACTAACTCGCATTT |
| Shewanella baltica OS155 | Sbal_1694 | -157 | 3.8 | ATTCGTGAATAGACTCACTCTA |
| -82 | 4.2 | AAACGCGAGCTAACTCGCATTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_1637 | -44 | 3.8 | AAATTTTATTTTTATCCAATTT |
| Shewanella amazonensis SB2B | Sama_1974 | -82 | 4 | AAATGGGATTAGACTCCCATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_1783 | -81 | 3.9 | AACTGAGATCTTCATCTCATTC |
| Shewanella piezotolerans WP3 | swp_3037 | -82 | 4.1 | AAGTGCGATCTCTGTCGCATTC |
| Shewanella sediminis HAW-EB3 | Ssed_2618 | -82 | 3.9 | AAATGGGAGCTGGATCTCATCA |
| Shewanella woodyi ATCC 51908 | Swoo_2048 | -82 | 3.9 | AAATGGGAGAAAGATCCCATTA |
|
Position: -116
Score: 4.8 Sequence: AATTGTGATCTTAATATCAATT
Locus tag: SVI_2616
|
||||
| SVI_2616 | -116 | 4.8 | AATTGTGATCTTAATATCAATT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hmgR | ||||
| Ortholog function: Tyrosine degradation transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO1965 | -148 | 4.4 | TACTGTGATCTTCTTATCAATT |
| Shewanella putrefaciens CN-32 | Sputcn32_1672 | -148 | 4.8 | TTATGTGATCTTGTTATCAATT |
| Shewanella sp W3-18-1 | Sputw3181_2353 | -148 | 4.8 | TTATGTGATCTTGTTATCAATT |
| Shewanella sp ANA-3 | Shewana3_2480 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCAATCTAAAAA | ||
| Shewanella sp MR-4 | Shewmr4_2290 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCAATCTAAAAA | ||
| Shewanella sp MR-7 | Shewmr7_2362 | -148 | 4.6 | TAGTGTGATCTTCTTATCAATT |
| -92 | 3.9 | ATCTGTTATCTCTATCTAAAAA | ||
| Shewanella baltica OS155 | Sbal_2614 | -148 | 4.7 | TAGTGTGATCTTGTTATCAATT |
| Shewanella denitrificans OS217 | Sden_2161 | -146 | 4.3 | CGTTGTGATCTAGCTATCAATT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2325 | -135 | 5.1 | ATATGTGATCTAACTTACAATT |
| Shewanella amazonensis SB2B | Sama_1570 | -135 | 4.7 | ATATGTGATCTGGGTATCAATT |
| Shewanella loihica PV-4 | Shew_2153 | -115 | 5.1 | TTATGTGATCTAAGTAACAATT |
| Shewanella pealeana ATCC 700345 | Spea_1875 | -114 | 4.3 | TAATGTGATCTAGGTTCAATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2408 | -114 | 4.5 | TAATGTGATCTAGCTTTAATTT |
| Shewanella piezotolerans WP3 | swp_2869 | -115 | 4.9 | TAATGTGATCTTGTTATCAATT |
| Shewanella sediminis HAW-EB3 | Ssed_2686 | -116 | 4.5 | ATTTGTGACATACCTATCAATT |
| Shewanella woodyi ATCC 51908 | Swoo_1933 | -116 | 4.5 | ATGTGTGATCTAAGTATCAATT |
|
Position: -53
Score: 3.6 Sequence: AAAAGCGCTTCGTATAACAAAA
Locus tag: SVI_2739
|
||||
| SVI_2739 | -53 | 3.6 | AAAAGCGCTTCGTATAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sdhC | ||||
| Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2273 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella sp W3-18-1 | Sputw3181_1735 | -66 | 3.8 | TGCCGTGATTTATCTCCCAGTT |
| Shewanella baltica OS155 | Sbal_2519 | -66 | 3.8 | TGCCGTGATTCACATCCCAGTT |
| Shewanella denitrificans OS217 | Sden_2187 | -274 | 3.7 | TGGATTGATGCAAATTACAAAA |
| -186 | 3.8 | AAGGGCGACAAACATCACAATT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_2347 | -74 | 4.1 | ACGTGTGATGTAACTTACGTTA |
| -19 | 3.7 | AAGTTTGAAAGGAATAACAATG | ||
| Shewanella amazonensis SB2B | Sama_1423 | -80 | 3.7 | TTTTGTGACGACTGTCGCCGTG |
| Shewanella pealeana ATCC 700345 | Spea_1784 | -86 | 4.4 | AACCGTGATCTGGATCACTGAT |
| Shewanella halifaxensis HAW-EB4 | Shal_2493 | -86 | 4.9 | ATCTGTGATCTGGATCACCGAT |
| Shewanella piezotolerans WP3 | swp_2955 | -20 | 4.6 | AACTGTGACCTAGTTCACGGAT |
| Shewanella sediminis HAW-EB3 | Ssed_2818 | -86 | 4.2 | GATCGTGACCTGTGTCACAGTT |
| Shewanella woodyi ATCC 51908 | Swoo_1833 | -87 | 4.8 | ATTTGTGATCTAAATCACGCCT |
|
Position: -35
Score: 4.1 Sequence: AAAATTGATCTAGATCAATAAA
Locus tag: SVI_2786
|
||||
| SVI_2786 | -35 | 4.1 | AAAATTGATCTAGATCAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO2010 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO2010 | -70 | 4.7 | TTTTGTGATCTTCGTCACTGTA |
| Shewanella putrefaciens CN-32 | Sputcn32_2305 | -65 | 5.1 | TTTTGTGATCTCCATCACCGTT |
| Shewanella sp W3-18-1 | Sputw3181_1703 | -65 | 5.1 | TTTTGTGATCTCCATCACCGTT |
| Shewanella sp MR-4 | Shewmr4_2257 | -65 | 4.9 | TTTTGTGATCTTAATCACTGTA |
| Shewanella sp MR-7 | Shewmr7_2329 | -65 | 4.9 | TTTTGTGATCTTAATCACTGTA |
| Shewanella baltica OS155 | Sbal_2577 | -65 | 5 | TTTTGTGATCTAAATCACTGTA |
| Shewanella denitrificans OS217 | Sden_2384 | -81 | 4.8 | AAATGTGATCCAGCTCAGCTTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2410 | -116 | 4.8 | TTTTGTGATCGACTTCACGTCT |
| Shewanella amazonensis SB2B | Sama_1307 | -51 | 4.3 | TTTTGTGAGCTGCATCACGGCA |
| Shewanella loihica PV-4 | Shew_2238 | -48 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella pealeana ATCC 700345 | Spea_1505 | -51 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_1587 | -80 | 4 | TAGTGTGATTGATATCTATAAT |
| Shewanella piezotolerans WP3 | swp_1711 | -21 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella sediminis HAW-EB3 | Ssed_2855 | -49 | 4.1 | AAAATTGATCTAGATCAATAAA |
| Shewanella woodyi ATCC 51908 | Swoo_1790 | -48 | 4.1 | TAAATTGATCTAGATCAATAAA |
|
Position: -132
Score: 3.9 Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: SVI_2906
|
||||
| SVI_2906 | -132 | 3.9 | AAGTTAGAATCAGATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadI | ||||
| Ortholog function: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) | ||||
| Shewanella oneidensis MR-1 | SO3089 | -131 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2460 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp W3-18-1 | Sputw3181_1548 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp ANA-3 | Shewana3_1460 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-4 | Shewmr4_1407 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sp MR-7 | Shewmr7_1472 | -135 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella baltica OS155 | Sbal_2761 | -136 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella denitrificans OS217 | Sden_1529 | -109 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2677 | -104 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella amazonensis SB2B | Sama_2168 | -112 | 3.6 | AAGTTAGAATCGGGTCACACTT |
| Shewanella loihica PV-4 | Shew_2426 | -134 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_2599 | -116 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_2671 | -119 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella piezotolerans WP3 | swp_3140 | -122 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella sediminis HAW-EB3 | Ssed_1628 | -151 | 3.9 | AAGTTAGAATCAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_3027 | -138 | 4.1 | AAGTTAGAATCAGATCACATTT |
|
Position: -73
Score: 3.8 Sequence: TATTGAGCTTAACCTCAAACAT
Locus tag: SVI_2916
|
||||
| SVI_2916 | -73 | 3.8 | TATTGAGCTTAACCTCAAACAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: putP | ||||
| Ortholog function: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2469 | -60 | 4.2 | AGGTTAGATTTTGATCACATTT |
| -30 | 3.8 | TAATGGGTTCTTGCTCAAACAT | ||
| Shewanella sp W3-18-1 | Sputw3181_1539 | -60 | 4.4 | ATGTTAGATTTTGATCACATTT |
| -30 | 3.8 | TAATGGGTTCTTGCTCAAACAT | ||
| Shewanella sp ANA-3 | Shewana3_1451 | -73 | 3.8 | TAATGGGTTCTTGCTCAAACAT |
| Shewanella sp MR-4 | Shewmr4_1398 | -73 | 3.8 | TAATGGGTTCTTGCTCAAACAT |
| Shewanella sp MR-7 | Shewmr7_1463 | -73 | 3.8 | TAATGGGTTCTTGCTCAAACAT |
| Shewanella baltica OS155 | Sbal_2770 | -102 | 3.8 | AGGTTAGATTTTAATCACACTT |
| Shewanella frigidimarina NCIMB 400 | Sfri_2686 | -64 | 4.5 | AAGTGTGAACTAGATCGAACTT |
| Shewanella amazonensis SB2B | Sama_2177 | -77 | 3.8 | AATTGGGATCCGACCCAAACTT |
| Shewanella pealeana ATCC 700345 | Spea_2608 | -104 | 3.8 | TGGTTAGATCTTCATCACATTC |
| Shewanella halifaxensis HAW-EB4 | Shal_2680 | -74 | 3.7 | ATTTGAGCCTTGGCTCATAAAT |
| Shewanella piezotolerans WP3 | swp_3151 | -72 | 3.7 | ATTATTGAGCTATAGCTCAAAT |
| -70 | 4.3 | TATTGAGCTATAGCTCAAATAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1619 | -72 | 3.9 | TATTGAGCTTCCTATCAAACAT |
| Shewanella woodyi ATCC 51908 | Swoo_3036 | -86 | 4.4 | GTATATGACCCAGTTCACATTT |
|
Position: -187
Score: 4.2 Sequence: AGGTGTGATTTTGTTCAATAAA
Locus tag: SVI_3005
|
||||
| SVI_3005 | -187 | 4.2 | AGGTGTGATTTTGTTCAATAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO1787 | ||||
| Ortholog function: probable membrane protein YPO2362 | ||||
| Shewanella oneidensis MR-1 | SO1787 | -149 | 4.2 | AACTGAGATCCTGATCACACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1483 | -154 | 4 | AACTGAGATCGGGATCACATGA |
| Shewanella sp W3-18-1 | Sputw3181_2618 | -154 | 4 | AACTGAGATCGGGATCACATGA |
| Shewanella sp ANA-3 | Shewana3_2668 | -151 | 4.4 | AACTGAGATCCTGATCACATAG |
| Shewanella sp MR-4 | Shewmr4_2502 | -151 | 3.7 | AACTGAGATCCTGATCACACCG |
| Shewanella sp MR-7 | Shewmr7_2570 | -151 | 3.7 | AACTGAGATCCTGATCACACCG |
| Shewanella baltica OS155 | Sbal_1597 | -156 | 4.2 | AACTGAGATCCTGATCACACAG |
|
Position: -157
Score: 4.2 Sequence: AGTTGGGACTTTTGTCACATAA
Position: -95
Score: 3.9 Sequence: AATCTTGATCTAGGTAAAGTTA
Locus tag: SVI_3008
|
||||
| SVI_3008 | -157 | 4.2 | AGTTGGGACTTTTGTCACATAA | |
| -95 | 3.9 | AATCTTGATCTAGGTAAAGTTA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: feoA | ||||
| Ortholog function: Ferrous iron transport protein A | ||||
| Shewanella oneidensis MR-1 | SO1783 | -153 | 4 | CATAGAGATTTTTGTCACATAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1480 | -155 | 4.6 | CATTGGGATTTTTATCACATAA |
| Shewanella sp W3-18-1 | Sputw3181_2621 | -155 | 4.6 | CATTGGGATTTTTATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2671 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella sp MR-4 | Shewmr4_2505 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella sp MR-7 | Shewmr7_2573 | -276 | 5 | AAGTGTGATCTTGTTCTCACTT |
| -153 | 4.4 | CATTGAGATTTTTGTCACATAA | ||
| Shewanella baltica OS155 | Sbal_1594 | -276 | 5 | AAGCGTGATGTTGATCACGTTT |
| Shewanella denitrificans OS217 | Sden_2415 | -148 | 3.9 | ATCTGCGGTATTTATCACATAA |
| Shewanella amazonensis SB2B | Sama_1214 | -228 | 3.8 | AAGTGTGATGAGTGTCACGCCG |
| Shewanella loihica PV-4 | Shew_2518 | -245 | 5.2 | ATATGTGATCTAGATCACGTTG |
| -155 | 4.2 | GATTGAGATATCTGTCACATAA | ||
| Shewanella pealeana ATCC 700345 | Spea_2691 | -247 | 5.5 | TTATGTGATGCGTATCACACTT |
| -158 | 4.2 | AGTTGAGAGTTTTGTCACATAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_2777 | -279 | 4.7 | AAGTGTGATCTGTGTCAAGTTT |
| -158 | 4.7 | AGTTGAGATATTTATCACATAA | ||
| Shewanella piezotolerans WP3 | swp_3271 | -280 | 4.6 | AAGCGTGATCTACGTCACACTG |
| -157 | 4.2 | AGTTGAGAGATTTGTCACATAA | ||
| Shewanella sediminis HAW-EB3 | Ssed_1531 | -275 | 4.9 | AAGTGTGATCTTGGTCACGCTA |
| -158 | 4.3 | AGTTGAGACTTTTGTCACATAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_3123 | -272 | 4.7 | AATCGTGACTTATATCACTTAA |
| -157 | 4.2 | AGTTGGGACTTTTGTCACATAA | ||
|
Position: -161
Score: 4.6 Sequence: AAGCGTGACATTGATCACCTTA
Locus tag: SVI_3111
|
||||
| SVI_3111 | -161 | 4.6 | AAGCGTGACATTGATCACCTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ompW | ||||
| Ortholog function: outer membrane protein W precursor | ||||
| Shewanella oneidensis MR-1 | SO1673 | -161 | 4.4 | TAGCGTGATTTGGATCTCAATG |
| -110 | 4.4 | AATTTTGATTTGGATCAATAAT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_1392 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| -158 | 4 | TTTCGTGATTAGGATCTCAAGT | ||
| Shewanella sp W3-18-1 | Sputw3181_2709 | -211 | 4.2 | ATAAATGCTGCGTATCACATAA |
| Shewanella sp ANA-3 | Shewana3_2775 | -107 | 3.8 | AATCTTGATTTGGATCAATAAG |
| Shewanella baltica OS155 | Sbal_1490 | -158 | 4 | TTTCGTGATTCAGCTCCCATGT |
| Shewanella denitrificans OS217 | Sden_2589 | -157 | 4.2 | TTTTGTGAATTAGATCAAGACT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1334 | -232 | 3.9 | TCGCTTGATCAACCTCACAAAA |
| -170 | 3.9 | TTTTGTGATCCAAATCAACAGC | ||
| Shewanella amazonensis SB2B | Sama_1371 | -56 | 4 | AATTGTTACGGACGTAACAGAA |
| Shewanella pealeana ATCC 700345 | Spea_2787 | -159 | 4.4 | TATTGTGATCTAGATCCTTTTA |
| Shewanella halifaxensis HAW-EB4 | Shal_2887 | -161 | 5.1 | AAATGTGATCTTCATCGCCTTT |
| -111 | 4.8 | ATTTTTGATTCAGGTCAAATTT | ||
| Shewanella piezotolerans WP3 | swp_3395 | -214 | 4 | TTGCGTGTTGTATGTCACCAAA |
| -161 | 4.4 | AAATGTGATCGCGATCACTGCT | ||
| Shewanella sediminis HAW-EB3 | Ssed_1469 | -158 | 4.5 | TTTTGTGAGCTTGGTCATGTAT |
| -108 | 3.7 | TTAATTGATCTGGATCAATAAG | ||
| Shewanella woodyi ATCC 51908 | Swoo_3207 | -211 | 4.3 | AATTATGACGTCGCTCACTAAA |
| -158 | 4.5 | AAGTGTGAGTTCGATCAAGTAT | ||
| -108 | 3.9 | TTTATTGATTTGGATCAATAAA | ||
|
Position: 25
Score: 3.7 Sequence: TGATGGGATCTGATTCTGATTT
Locus tag: SVI_3148
|
||||
| SVI_3148 | 25 | 3.7 | TGATGGGATCTGATTCTGATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purE | ||||
| Ortholog function: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) | ||||
| Shewanella oneidensis MR-1 | SO3554 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella oneidensis MR-1 | SO3554 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella putrefaciens CN-32 | Sputcn32_1041 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella putrefaciens CN-32 | Sputcn32_1041 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3124 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp W3-18-1 | Sputw3181_3124 | -81 | 4 | ATTTGCAATCATGATCACACAG |
| Shewanella sp ANA-3 | Shewana3_3155 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella sp ANA-3 | Shewana3_3155 | -70 | 3.9 | TTTTGCAACTATGATCACACAA |
| Shewanella sp MR-4 | Shewmr4_2975 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-4 | Shewmr4_2975 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-7 | Shewmr7_3057 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella sp MR-7 | Shewmr7_3057 | -70 | 4.5 | TTTTGTAACTATGATCACACAA |
| Shewanella baltica OS155 | Sbal_1036 | -139 | 3.8 | TGATATGAAATTGTTCGCAGTT |
| -95 | 4.1 | TTTCGTTATATACTTAACAGAA | ||
| Shewanella denitrificans OS217 | Sden_1224 | -315 | 3.7 | AATTCTGACTCATCTTAAATTA |
| Shewanella amazonensis SB2B | Sama_1064 | -82 | 4.1 | AAATTTGCCAAAGCTCACACAT |
| Shewanella amazonensis SB2B | Sama_1064 | -82 | 4.1 | AAATTTGCCAAAGCTCACACAT |
| Shewanella halifaxensis HAW-EB4 | Shal_1245 | -269 | 4.4 | TTGTGGGATCTAGGTAACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1245 | -269 | 4.4 | TTGTGGGATCTAGGTAACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_1245 | -269 | 4.4 | TTGTGGGATCTAGGTAACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_1333 | -217 | 3.8 | TATTGTGAAGTCATCCGGATAT |
| Shewanella woodyi ATCC 51908 | Swoo_3321 | -288 | 3.7 | TCCAGCGACTTAGATCACATTT |
|
Position: -134
Score: 4 Sequence: AAGTGTGATCTAAATCTATTTG
Locus tag: SVI_3277
|
||||
| SVI_3277 | -134 | 4 | AAGTGTGATCTAAATCTATTTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: deoA | ||||
| Ortholog function: thymidine phosphorylase (EC 2.4.2.4) | ||||
| Shewanella oneidensis MR-1 | SO1218 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella putrefaciens CN-32 | Sputcn32_2821 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella sp W3-18-1 | Sputw3181_1190 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella sp ANA-3 | Shewana3_1042 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella sp MR-4 | Shewmr4_1038 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella sp MR-7 | Shewmr7_1103 | -135 | 3.9 | AAGTGTGACCTAAATCTAGTTG |
| Shewanella baltica OS155 | Sbal_3226 | -136 | 3.7 | AAGTGTGACCTAAATCTATTTG |
| Shewanella amazonensis SB2B | Sama_0974 | -135 | 3.9 | ATTTGTGATCCGCGTCGAAACG |
| Shewanella loihica PV-4 | Shew_2814 | -133 | 4 | AAGTGTGATCTAAATCTATTTG |
| Shewanella pealeana ATCC 700345 | Spea_3047 | -138 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_3135 | -138 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella piezotolerans WP3 | swp_1230 | -139 | 4.8 | AAGTGTGATCTAAATCTAATTA |
| Shewanella sediminis HAW-EB3 | Ssed_3377 | -134 | 4 | AAGTGTGATCTAAATCTATTTG |
| Shewanella woodyi ATCC 51908 | Swoo_3548 | -157 | 4.2 | AAGTGTGATCTAAATCTAGTTG |
|
Position: -151
Score: 3.8 Sequence: TATTGTGATTTACGATAAATTG
Locus tag: SVI_3279
|
||||
| SVI_3279 | -151 | 3.8 | TATTGTGATTTACGATAAATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: tsx | ||||
| Ortholog function: nucleoside-specific channel-forming protein, Tsx | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_2823 | -268 | 3.8 | AATAGTGATTTCTGTCGTGAAT |
| Shewanella sp W3-18-1 | Sputw3181_1188 | -268 | 3.8 | AATAGTGATTTCTGTCGTGAAT |
| Shewanella sp ANA-3 | Shewana3_1040 | -144 | 4.2 | AGTCGCGACTTTGTTCACAATT |
| Shewanella sp MR-4 | Shewmr4_1036 | -144 | 4.2 | AGTCGCGACTTTGTTCACAATT |
| Shewanella sp MR-7 | Shewmr7_1101 | -144 | 4.2 | AGTCGCGACTTTGTTCACAATT |
| Shewanella baltica OS155 | Sbal_3228 | -145 | 4.2 | AGTCGCGACTTTGTTCACAATT |
| Shewanella denitrificans OS217 | Sden_1024 | -145 | 4 | AGTCACGATATTGTTCACATAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_1001 | -146 | 4.2 | AGTCGCGACATTGTTCACAAAA |
| Shewanella loihica PV-4 | Shew_2816 | -99 | 4 | TATTGTGATTTAATACAATTTG |
| Shewanella sediminis HAW-EB3 | Ssed_3379 | -245 | 3.9 | CTGTGTGAGGATAAACACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_3550 | -103 | 3.7 | TGTTGTGCTTTAGCACAGAATA |
|
Position: -254
Score: 4 Sequence: TTGTGTGATAGAAATAAATTAA
Position: -131
Score: 4.3 Sequence: CAGTGTGATTACGGTCTCATTT
Locus tag: SVI_3340
|
||||
| SVI_3340 | -254 | 4 | TTGTGTGATAGAAATAAATTAA | |
| -131 | 4.3 | CAGTGTGATTACGGTCTCATTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: nqrA-2 | ||||
| Ortholog function: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-) | ||||
| Shewanella oneidensis MR-1 | SO1103 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0940 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp W3-18-1 | Sputw3181_3236 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp ANA-3 | Shewana3_0938 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp MR-4 | Shewmr4_0936 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sp MR-7 | Shewmr7_0974 | -129 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella baltica OS155 | Sbal_0924 | -128 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella denitrificans OS217 | Sden_0982 | -128 | 4.3 | CAGCGTGATTGCGATCGCATTA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0949 | -127 | 4.3 | CAGCGTGATTATGATCGCATTT |
| Shewanella amazonensis SB2B | Sama_2539 | -127 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella loihica PV-4 | Shew_2881 | -131 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| -73 | 4.1 | ATGTTTGAAATCTATCTCATTT | ||
| Shewanella pealeana ATCC 700345 | Spea_3103 | -133 | 4.4 | CAGCGTGATTCTGATCGCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3187 | -127 | 3.7 | CAGCGTGATTACAGTCGCACTT |
| Shewanella piezotolerans WP3 | swp_1167 | -132 | 4.3 | CAGCGTGATTGCGATCGCATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3431 | -130 | 4.1 | CAGCGTGATTGCGGTCGCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3617 | -46 | 4 | CAGCGTGATTGCGGTCGCAAAT |
|
Position: -69
Score: 5.3 Sequence: AAATGTGATCTAGCTTACATTT
Locus tag: SVI_3412
|
||||
| SVI_3412 | -69 | 5.3 | AAATGTGATCTAGCTTACATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: lipB | ||||
| Ortholog function: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase | ||||
| Shewanella oneidensis MR-1 | SO1162 | -68 | 5.1 | AAGTGTGATCTATCTTACATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_2875 | -69 | 5.3 | AAATGTGATCTATCTTACATTT |
| Shewanella sp W3-18-1 | Sputw3181_1028 | -75 | 5.3 | AAATGTGATCTATCTTACATTT |
| Shewanella sp ANA-3 | Shewana3_0989 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sp MR-4 | Shewmr4_0985 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sp MR-7 | Shewmr7_1050 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella baltica OS155 | Sbal_3281 | -74 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella loihica PV-4 | Shew_2941 | -70 | 5.3 | AAATGTGATCTACCTTACATTT |
| Shewanella pealeana ATCC 700345 | Spea_3155 | -76 | 5.2 | AAATGTGATCCGTATTACATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3240 | -76 | 5.2 | AAATGTGATCCGTATTACATTT |
| Shewanella piezotolerans WP3 | swp_3928 | -69 | 5.2 | AAATGTGATCTGTCTTACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_3491 | -75 | 5.3 | AAATGTGATCTAGCTTACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_3714 | -74 | 5.1 | AAGTGTGATCTAGCTTACAATT |
|
Position: -159
Score: 4.1 Sequence: TTTTTTGTTTTAAATCAAACAA
Locus tag: SVI_3447
|
||||
| SVI_3447 | -159 | 4.1 | TTTTTTGTTTTAAATCAAACAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: sfcA | ||||
| Ortholog function: NAD-dependent malic enzyme (EC 1.1.1.38) | ||||
| Shewanella oneidensis MR-1 | SO3855 | -66 | 4 | TTACGTGACCTATAGCACGTCT |
| Shewanella putrefaciens CN-32 | Sputcn32_0784 | -54 | 4.4 | TTACGTGACTTAAAGCACGTAT |
| Shewanella sp W3-18-1 | Sputw3181_3391 | -54 | 4.4 | TTACGTGACTTAAAGCACGTAT |
| Shewanella sp ANA-3 | Shewana3_0750 | -65 | 3.9 | TTACGTGACTTACAGCACGTCT |
| Shewanella sp MR-4 | Shewmr4_3188 | -66 | 3.9 | TTACGTGACTTACAGCACGTCT |
| Shewanella sp MR-7 | Shewmr7_0778 | -66 | 3.9 | TTACGTGACTTACAGCACGTCT |
| Shewanella baltica OS155 | Sbal_0676 | -55 | 4.4 | TTACGTGACTTACAGCACGTAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0833 | -122 | 5 | TAATGTGATTTTACTCACTTAA |
| Shewanella sediminis HAW-EB3 | Ssed_3518 | -87 | 3.7 | AAACGCAACAAAGATCACACTT |
|
Position: -137
Score: 5 Sequence: AAGTGTGATCCAAGTCACATTC
Locus tag: SVI_3549
|
||||
| SVI_3549 | -137 | 5 | AAGTGTGATCCAAGTCACATTC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadD-2 | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0970 | -118 | 4.6 | CGTTGTGATGTTTTTCACGATA |
| Shewanella sp W3-18-1 | Sputw3181_3197 | -117 | 4.6 | CGTTGTGATGTTTTTCACGATA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3097 | -256 | 5 | TTTGGTGACATAGATCACATAT |
| Shewanella piezotolerans WP3 | swp_3965 | -222 | 3.7 | ATGCGCGATTTGCATTACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_3695 | -135 | 5.4 | TAATGTGATCTATTTCTCATAT |
| Shewanella woodyi ATCC 51908 | Swoo_3995 | -147 | 3.7 | AACCATGATCTATTTCGTAATT |
|
Position: -149
Score: 3.9 Sequence: GGATTTGACCTTGGTCACACTT
Position: -83
Score: 3.9 Sequence: TTTAGTGATCTTGATCATGCCT
Locus tag: SVI_3596
|
||||
| SVI_3596 | -149 | 3.9 | GGATTTGACCTTGGTCACACTT | |
| -83 | 3.9 | TTTAGTGATCTTGATCATGCCT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO3987 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO3987 | -83 | 3.9 | TCTTGTGAGCGAGTTCACGCCT |
| Shewanella putrefaciens CN-32 | Sputcn32_0679 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp W3-18-1 | Sputw3181_3492 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp ANA-3 | Shewana3_0651 | -83 | 4 | TCTTGTGAGCCAGTTCACGCCT |
| Shewanella sp MR-4 | Shewmr4_0652 | -83 | 4.1 | TCTTGTGACCTAGTTCACGCCT |
| Shewanella sp MR-7 | Shewmr7_3370 | -83 | 4.1 | TCTTGTGACCTAGTTCACGCCT |
| Shewanella baltica OS155 | Sbal_0787 | -277 | 3.7 | TAAAGCGATATATGTAACAAAC |
| Shewanella amazonensis SB2B | Sama_0602 | -307 | 4.1 | AAATTGAATATGGATCACATTT |
| Shewanella loihica PV-4 | Shew_0778 | -147 | 5.1 | AGATTTGATGTAAATCACATTT |
| -82 | 4.4 | TAAAGTGACCTGTCTCACACCT | ||
| Shewanella pealeana ATCC 700345 | Spea_0734 | -147 | 4.1 | CGATATGATTTGGATCACTTTT |
| -82 | 4.2 | AATAGTGATATACATCACAAGG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_0787 | -81 | 4.9 | AATAGTGATGCAGATCACACTG |
| Shewanella piezotolerans WP3 | swp_4346 | -4 | 4.6 | TACTGTGATCGATATCACGTCT |
| Shewanella sediminis HAW-EB3 | Ssed_0816 | -321 | 3.9 | AAACTCAATATAGTTCACATTT |
| -147 | 3.9 | GGATATGATCTAAATCACACTG | ||
| Shewanella woodyi ATCC 51908 | Swoo_3763 | -82 | 4.3 | TTGTGTGACCTGCATCACGCCA |
|
Position: -149
Score: 4.6 Sequence: AAATGAGATCCAGCGCACAAAT
Position: -89
Score: 3.9 Sequence: ATTCTTGATCGAGATCAGCAAA
Locus tag: SVI_3697
|
||||
| SVI_3697 | -149 | 4.6 | AAATGAGATCCAGCGCACAAAT | |
| -89 | 3.9 | ATTCTTGATCGAGATCAGCAAA | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_0777 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0777 | -140 | 4.5 | AAACTTGATTCGTGTCACACAA |
| Shewanella sp W3-18-1 | Sputw3181_3398 | -140 | 4.5 | AAACTTGATTCGTGTCACACAA |
| Shewanella sp ANA-3 | Shewana3_0738 | -140 | 4.4 | AAATTTGAACCACATCACACAG |
| Shewanella frigidimarina NCIMB 400 | Sfri_0507 | -129 | 4.2 | TTTTGTGAGCTAATTGGCAATT |
| Shewanella amazonensis SB2B | Sama_0549 | -139 | 4.3 | AAAGTTGATTCACATCAAATTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0680 | -79 | 3.9 | GTTTTTGACTAAGATCAAAAAA |
| Shewanella piezotolerans WP3 | swp_4510 | -64 | 4.1 | AAACGTGATCAACAGCATCTTT |
| Shewanella woodyi ATCC 51908 | Swoo_4146 | -81 | 3.9 | TTTATTGATCGAGATCAGCTTA |
|
Position: -150
Score: 3.9 Sequence: AAACTTGATCTTGCCCACAACT
Locus tag: SVI_3701
|
||||
| SVI_3701 | -150 | 3.9 | AAACTTGATCTTGCCCACAACT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: omp35 | ||||
| Ortholog function: outer membrane porin | ||||
| Shewanella oneidensis MR-1 | SO3896 | -67 | 4.1 | AAATGTGTTAAACCACACAAAA |
| Shewanella sp ANA-3 | Shewana3_0733 | -67 | 4.1 | AAATGTGTTAAACCACACAAAA |
| Shewanella sp MR-4 | Shewmr4_3228 | -67 | 3.7 | AAATGTGTAAAACCACACAAAA |
| Shewanella sp MR-7 | Shewmr7_0761 | -67 | 3.7 | AAATGTGTAAAACCACACAAAA |
| Shewanella baltica OS155 | Sbal_3570 | -67 | 3.6 | AAATGCGTTAAACCACACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0503 | -145 | 4.5 | TTATTTGATCTAGGCCACACTA |
| Shewanella loihica PV-4 | Shew_3260 | -150 | 4.1 | AAATTTGATCTGCGCCACACTC |
| Shewanella pealeana ATCC 700345 | Spea_0589 | -150 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella halifaxensis HAW-EB4 | Shal_0676 | -150 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella piezotolerans WP3 | swp_4514 | -150 | 4.1 | AAACTTGATCTAGCCCACAATC |
| Shewanella sediminis HAW-EB3 | Ssed_4009 | -151 | 4.4 | AAACATGATCTAGTCCACAATT |
| Shewanella woodyi ATCC 51908 | Swoo_4152 | -241 | 3.3 | AATTATTAACTCTTTCTTAAAT |
| Shewanella woodyi ATCC 51908 | Swoo_4151 | -149 | 4.3 | AAGTTTGATCTAGTCCACAATC |
|
Position: -9
Score: 4.4 Sequence: ATATTTGATATGTATCACCTCA
Locus tag: SVI_3748
|
||||
| SVI_3748 | -9 | 4.4 | ATATTTGATATGTATCACCTCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4154 | ||||
| Ortholog function: transcriptional regulator, LysR family | ||||
| Shewanella oneidensis MR-1 | SO4154 | -69 | 3.7 | AATTGTGCATTAGTTAATCTAT |
| -9 | 4.9 | TAATTTGATATGTATCATATAA | ||
| Shewanella sp ANA-3 | Shewana3_3695 | -9 | 4.3 | TAATTTGATATGTACCATATAA |
| Shewanella loihica PV-4 | Shew_0506 | -30 | 3.9 | TATTGAAATCATTTTCAAAAAA |
| -9 | 4 | ATTTTTGATATGTATCATCTCA | ||
| Shewanella piezotolerans WP3 | swp_4588 | -9 | 4.4 | ATATTTGATATGTACCACCTTA |
| Shewanella sediminis HAW-EB3 | Ssed_4064 | -9 | 4.4 | ATATTTGATATGTATCACCTCA |
| Shewanella woodyi ATCC 51908 | Swoo_0591 | -9 | 4.2 | ATTTTTGACATGTATCACCTCA |
|
Position: -79
Score: 4.9 Sequence: AAGTGTGATCTCAGTCTCATTT
Locus tag: SVI_3840
|
||||
| SVI_3840 | -79 | 4.9 | AAGTGTGATCTCAGTCTCATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: cyaA | ||||
| Ortholog function: Adenylate cyclase (EC 4.6.1.1) | ||||
| Shewanella oneidensis MR-1 | SO4312 | -91 | 5 | AAGTGTGATGGACCTCTCATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_3586 | -91 | 5.4 | AAATGTGATGCAGATCTCATTT |
| -51 | 3.8 | AAGTGTTAACATAAGCACACTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3725 | -91 | 5.4 | AAATGTGATGCAGATCTCATTT |
| -51 | 3.8 | AAGTGTTAACATAAGCACACTT | ||
| Shewanella sp ANA-3 | Shewana3_0387 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0389 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3637 | -92 | 4.7 | AAGTGTGACGAACTTCTCATTT |
| -52 | 3.9 | AAGTGTTAACATGAGCACACTT | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0441 | -129 | 3.8 | AAATGCTACGATGATCACCATT |
| -100 | 3.9 | AAATGTGATCTTGATTGGCAAA | ||
| Shewanella amazonensis SB2B | Sama_3253 | -90 | 5.4 | AAATGTGATCTCTATCGCAAAT |
| Shewanella loihica PV-4 | Shew_0319 | -88 | 5.1 | AAGTGTGATCCAGCTCTCAAAT |
| Shewanella pealeana ATCC 700345 | Spea_0374 | -87 | 5.3 | AAGTGTGATCTTGATCGCATTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3916 | -88 | 5.3 | AAGCGTGATGTTGATCACATTT |
| Shewanella piezotolerans WP3 | swp_0403 | -106 | 5.5 | AAATGTGATCGGAGTCACATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4132 | -90 | 5.2 | AAGTGTGATCTTGATCTCATTT |
| Shewanella woodyi ATCC 51908 | Swoo_0484 | -98 | 5 | AAGTGTGATCTTGGTCTCATTT |
|
Position: -133
Score: 4.6 Sequence: AAATGAGACTGAGATCACACTT
Locus tag: SVI_3841
|
||||
| SVI_3841 | -133 | 4.6 | AAATGAGACTGAGATCACACTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hemC | ||||
| Ortholog function: Porphobilinogen deaminase (EC 2.5.1.61) | ||||
| Shewanella oneidensis MR-1 | SO4313 | -172 | 3.9 | GATTGTGCTCATGTTAACACTT |
| -132 | 4.5 | AAATGAGAGGTCCATCACACTT | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3587 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp W3-18-1 | Sputw3181_3726 | -173 | 4.1 | AAGTGTGCTTATGTTAACACTT |
| -133 | 5.2 | AAATGAGATCTGCATCACATTT | ||
| Shewanella sp ANA-3 | Shewana3_0386 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-4 | Shewmr4_0388 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella sp MR-7 | Shewmr7_3638 | -172 | 4.2 | AAGTGTGCTCATGTTAACACTT |
| -132 | 4.3 | AAATGAGAAGTTCGTCACACTT | ||
| Shewanella baltica OS155 | Sbal_4000 | -132 | 4.9 | AAATGTGAAGTCCGTCACACTT |
| Shewanella denitrificans OS217 | Sden_0388 | -85 | 3.9 | AAATCTGCTTTGCTTCAAACAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0440 | -167 | 4 | AATGGTGATCATCGTAGCATTT |
| Shewanella amazonensis SB2B | Sama_3254 | -89 | 5.1 | ATTTGCGATAGAGATCACATTT |
| Shewanella loihica PV-4 | Shew_0318 | -119 | 4.7 | ATTTGAGAGCTGGATCACACTT |
| Shewanella pealeana ATCC 700345 | Spea_0373 | -133 | 5 | AAATGCGATCAAGATCACACTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3917 | -133 | 5.1 | AAATGTGATCAACATCACGCTT |
| Shewanella piezotolerans WP3 | swp_0402 | -40 | 4.3 | AAATGTAATCCGTATCGCAACA |
| Shewanella sediminis HAW-EB3 | Ssed_4133 | -133 | 4.9 | AAATGAGATCAAGATCACACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0483 | -229 | 4.6 | AAATGAGACCAAGATCACACTT |
|
Position: -92
Score: 4.9 Sequence: AAGTGTGATCTAGTTAACCTTA
Locus tag: SVI_3884
|
||||
| SVI_3884 | -92 | 4.9 | AAGTGTGATCTAGTTAACCTTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: udp | ||||
| Ortholog function: Uridine phosphorylase (EC 2.4.2.3) | ||||
| Shewanella oneidensis MR-1 | SO4133 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella putrefaciens CN-32 | Sputcn32_0543 | -230 | 4.4 | AAGTTAGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella sp W3-18-1 | Sputw3181_3629 | -230 | 4.4 | AAGTTAGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella sp ANA-3 | Shewana3_3680 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella sp MR-4 | Shewmr4_3505 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella sp MR-7 | Shewmr7_0447 | -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC |
| Shewanella baltica OS155 | Sbal_3852 | -229 | 3.8 | GATTAGGATCTGGTTCACACTT |
| -92 | 4.1 | TTCTGTGATCAAGTTAACCTTC | ||
| Shewanella denitrificans OS217 | Sden_3074 | -92 | 4.4 | AACTGTGATGAAGTTAACCAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_3403 | -244 | 4.7 | TAACTTGATGTAAATCACGTTA |
| -92 | 4.8 | ATATGTGATCAAGTTAACCTTA | ||
| Shewanella amazonensis SB2B | Sama_0412 | -92 | 4.7 | ATTCGTGATCCAGTTAACCTTA |
| Shewanella loihica PV-4 | Shew_3390 | -92 | 4.6 | AAGTGTGATCAGGTTAACCTTA |
| Shewanella pealeana ATCC 700345 | Spea_0460 | -92 | 4.7 | AAGTGTGATCGGCTTAACCTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0535 | -92 | 4.6 | AAGTGTGATCAGTTTAACCTTT |
| Shewanella piezotolerans WP3 | swp_4702 | -310 | 4.7 | ATTTGTGAGTTAGATCATGTTT |
| -92 | 4.6 | AAGTGTGATCAGGTTAACCTTA | ||
| Shewanella sediminis HAW-EB3 | Ssed_0461 | -92 | 4.7 | AAGTGTGATCGAGCTAACCTTT |
| Shewanella sediminis HAW-EB3 | Ssed_2504 | -84 | 3.9 | CAATGTAATATGCAAAACATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4509 | -272 | 4.9 | AAATGTGATGTGGGTCAACAAA |
| -92 | 4.7 | AAGTGTGATCAAGTTAACCTTA | ||
|
Position: -102
Score: 4.2 Sequence: CAATGTGAATAATTTCATAAAT
Locus tag: SVI_3886
|
||||
| SVI_3886 | -102 | 4.2 | CAATGTGAATAATTTCATAAAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO4138 | ||||
| Ortholog function: hypothetical protein | ||||
| Shewanella oneidensis MR-1 | SO4138 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0540 | -97 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp W3-18-1 | Sputw3181_3632 | -97 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp ANA-3 | Shewana3_3683 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp MR-4 | Shewmr4_3508 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella sp MR-7 | Shewmr7_0444 | -96 | 4.2 | CATTGTGAAGCGTATCATGTAA |
| Shewanella baltica OS155 | Sbal_3855 | -97 | 4.3 | ATGTGTGAAGCGTATCATGTAA |
| Shewanella loihica PV-4 | Shew_3393 | -109 | 3.9 | TAGCGTGAAGCATATCAAGCAA |
| Shewanella pealeana ATCC 700345 | Spea_0458 | -96 | 3.8 | TAGCGTGAAGAGGATCAAGCTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0533 | -96 | 3.8 | TAGCGTGAAGGGGATCATGCTT |
|
Position: -154
Score: 4.3 Sequence: ATTTATGAAATTATTCACATTG
Locus tag: SVI_3887
|
||||
| SVI_3887 | -154 | 4.3 | ATTTATGAAATTATTCACATTG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: Sputcn32_0539 | ||||
| Ortholog function: mechanosensitive ion channel | ||||
| Shewanella putrefaciens CN-32 | Sputcn32_0539 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella putrefaciens CN-32 | Sputcn32_0539 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp W3-18-1 | Sputw3181_3633 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp W3-18-1 | Sputw3181_3633 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp ANA-3 | Shewana3_3684 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp ANA-3 | Shewana3_3684 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-4 | Shewmr4_3509 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-4 | Shewmr4_3509 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-7 | Shewmr7_0443 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella sp MR-7 | Shewmr7_0443 | -94 | 4.3 | TTACATGATACGCTTCACAATG |
| Shewanella baltica OS155 | Sbal_3856 | -95 | 4.5 | TTACATGATACGCTTCACACAT |
| Shewanella baltica OS155 | Sbal_3856 | -95 | 4.5 | TTACATGATACGCTTCACACAT |
| Shewanella loihica PV-4 | Shew_3394 | -144 | 4.1 | TTGCTTGATATGCTTCACGCTA |
| Shewanella loihica PV-4 | Shew_3394 | -144 | 4.1 | TTGCTTGATATGCTTCACGCTA |
| Shewanella pealeana ATCC 700345 | Spea_0457 | -138 | 4.1 | AAGCTTGATCCTCTTCACGCTA |
| Shewanella pealeana ATCC 700345 | Spea_0457 | -138 | 4.1 | AAGCTTGATCCTCTTCACGCTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0532 | -137 | 4 | AAGCATGATCCCCTTCACGCTA |
| Shewanella halifaxensis HAW-EB4 | Shal_0532 | -137 | 4 | AAGCATGATCCCCTTCACGCTA |
| Shewanella sediminis HAW-EB3 | Ssed_0457 | -154 | 4.2 | ATTCATGATCCACTTCACCTAG |
| Shewanella sediminis HAW-EB3 | Ssed_0457 | -154 | 4.2 | ATTCATGATCCACTTCACCTAG |
| Shewanella woodyi ATCC 51908 | Swoo_4512 | -127 | 3.9 | ATTCATGATCCTCTTCACGCAG |
| Shewanella woodyi ATCC 51908 | Swoo_4512 | -127 | 3.9 | ATTCATGATCCTCTTCACGCAG |
|
Position: -189
Score: 4 Sequence: TATTGTGAAATCGCACAGAAAA
Locus tag: SVI_3901
|
||||
| SVI_3901 | -189 | 4 | TATTGTGAAATCGCACAGAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purH | ||||
| Ortholog function: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) | ||||
| Shewanella oneidensis MR-1 | SO0442 | -180 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3401 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0542 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp ANA-3 | Shewana3_0441 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-4 | Shewmr4_0445 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-7 | Shewmr7_3584 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella baltica OS155 | Sbal_0420 | -195 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0493 | -195 | 3.9 | TATTGTGAAATCACACAGAAAA |
| Shewanella amazonensis SB2B | Sama_0395 | -194 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella loihica PV-4 | Shew_3412 | -182 | 4 | TATTGTGAAATCGCACAGAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0432 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0488 | -182 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella piezotolerans WP3 | swp_4724 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0444 | -282 | 4 | GAGTGTGACGCTCTGCACAAAT |
| -191 | 4.2 | TATTGTGAAATCGTGCAGAAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0296 | -192 | 3.6 | TATTGTGAAATCACATATAAAT |
|
Position: -124
Score: 3.5 Sequence: ATTTTTAATATTTAGCGCAAAG
Locus tag: SVI_3902
|
||||
| SVI_3902 | -124 | 3.5 | ATTTTTAATATTTAGCGCAAAG | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: purD | ||||
| Ortholog function: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) | ||||
| Shewanella oneidensis MR-1 | SO0441 | -180 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella putrefaciens CN-32 | Sputcn32_3402 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp W3-18-1 | Sputw3181_0541 | -193 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella sp ANA-3 | Shewana3_0440 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-4 | Shewmr4_0444 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sp MR-7 | Shewmr7_3585 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella baltica OS155 | Sbal_0419 | -195 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0492 | -195 | 3.9 | TATTGTGAAATCACACAGAAAA |
| Shewanella amazonensis SB2B | Sama_0394 | -194 | 4 | TATTGTGAAATCACGCAGAAAA |
| Shewanella loihica PV-4 | Shew_3413 | -182 | 4 | TATTGTGAAATCGCACAGAAAA |
| Shewanella pealeana ATCC 700345 | Spea_0431 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0487 | -182 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella piezotolerans WP3 | swp_4725 | -181 | 4.1 | TATTGTGAAATCGCGCAGAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_0443 | -282 | 4 | GAGTGTGACGCTCTGCACAAAT |
| -191 | 4.2 | TATTGTGAAATCGTGCAGAAAA | ||
| Shewanella woodyi ATCC 51908 | Swoo_0295 | -192 | 3.6 | TATTGTGAAATCACATATAAAT |
|
Position: -281
Score: 3.7 Sequence: TATTGTTAATTCTCTCGCTATA
Position: -240
Score: 3.4 Sequence: ATTTTTGATAATTTACTTAATT
Position: -124
Score: 4 Sequence: TTTTGTGCGCCTCTTCATAGTT
Locus tag: SVI_3969
|
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| SVI_3969 | -281 | 3.7 | TATTGTTAATTCTCTCGCTATA | |
| -240 | 3.4 | ATTTTTGATAATTTACTTAATT | ||
| -124 | 4 | TTTTGTGCGCCTCTTCATAGTT | ||
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ygbA | ||||
| Ortholog function: nitrosative stress induced protein | ||||
| Shewanella oneidensis MR-1 | SO0324 | -97 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella putrefaciens CN-32 | Sputcn32_3663 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp W3-18-1 | Sputw3181_3804 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella sp ANA-3 | Shewana3_3845 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-4 | Shewmr4_3649 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella sp MR-7 | Shewmr7_0295 | -97 | 4.1 | TTTTGTGCGCATCTTCATAAAT |
| Shewanella baltica OS155 | Sbal_4067 | -96 | 4.1 | TTTTGTGCGCACCTTCATAAAT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0404 | -142 | 4 | TTTTGCGATCCCAACCTCAAAA |
| Shewanella amazonensis SB2B | Sama_3326 | -94 | 3.6 | TTTTGTGCGCATCTTCATGCTT |
| Shewanella loihica PV-4 | Shew_0259 | -96 | 4.1 | TTTTGTGCGCATCTTCATAATT |
| Shewanella pealeana ATCC 700345 | Spea_0303 | -96 | 3.9 | TTTTGTGCACATCTTCAAAGTT |
| Shewanella halifaxensis HAW-EB4 | Shal_3986 | -96 | 4 | TTTTGTGCACATCTTCAAACTT |
| Shewanella piezotolerans WP3 | swp_2171 | -96 | 4 | TTTTGTGCGCACCTTCAAACTT |
| Shewanella sediminis HAW-EB3 | Ssed_4199 | -187 | 3.9 | TTTTGTGCACATCTTCATACTT |
| Shewanella woodyi ATCC 51908 | Swoo_0395 | -82 | 3.4 | TTCTGTGCGCACCTTCATAGAT |
|
Position: -111
Score: 4.6 Sequence: TTGAGTGATGTAGCACACATAA
Locus tag: SVI_4020
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| SVI_4020 | -111 | 4.6 | TTGAGTGATGTAGCACACATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ppc | ||||
| Ortholog function: phosphoenolpyruvate carboxylase (EC 4.1.1.31) | ||||
| Shewanella sp ANA-3 | Shewana3_3906 | -233 | 3.7 | AATATTGCGTTAGCTCGCATTT |
| -189 | 3.7 | TATCGCGATTAGTTGCATATAA | ||
| Shewanella sp MR-4 | Shewmr4_3710 | -228 | 3.7 | AATATTGCGTTAGCTCGCATTT |
| -184 | 4.3 | TATCGTGATTAGTTGCATATAA | ||
| Shewanella sp MR-7 | Shewmr7_0235 | -228 | 3.7 | AATATTGCGTTAGCTCGCATTT |
| -184 | 4.3 | TATCGTGATTAGTTGCATATAA | ||
| Shewanella loihica PV-4 | Shew_0200 | -107 | 4.3 | CAAGGTGATATAGAACACATAA |
| Shewanella halifaxensis HAW-EB4 | Shal_4095 | -106 | 5 | AAAAGTGATATAGAGCACATTA |
| Shewanella piezotolerans WP3 | swp_2053 | -106 | 4.4 | TAAAGTGAGGTAGAGCACATTC |
| Shewanella sediminis HAW-EB3 | Ssed_4278 | -111 | 3.9 | CCGAGTGATGTAGAGCACATAA |
| Shewanella woodyi ATCC 51908 | Swoo_0327 | -111 | 4.7 | AGAAGTGATGTAGAACACATAA |
|
Position: -249
Score: 3.9 Sequence: CTATTTGATGTGTTTCCAATAA
Locus tag: SVI_4129
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| SVI_4129 | -249 | 3.9 | CTATTTGATGTGTTTCCAATAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: scyA | ||||
| Ortholog function: cytochrome c-type protein | ||||
| Shewanella oneidensis MR-1 | SO0264 | -234 | 4 | CAATTTGATATGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella putrefaciens CN-32 | Sputcn32_3726 | -229 | 4 | CAATTTGATGTGGTTCCAATAA |
| -129 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp W3-18-1 | Sputw3181_0189 | -229 | 4 | CAATTTGATGTGGTTCCAATAA |
| -129 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp ANA-3 | Shewana3_0232 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp MR-4 | Shewmr4_0232 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 4.1 | TGCTGAGATTCTAATCACAAAA | ||
| Shewanella sp MR-7 | Shewmr7_0227 | -234 | 4 | CAATTTGATGTGGTTCCAATAA |
| -125 | 3.7 | CGCTGAGATTCTAATCACAAAA | ||
| Shewanella baltica OS155 | Sbal_0229 | -228 | 3.9 | CAATATGATGTGGTTCCAATAA |
| -128 | 4.5 | TGTTGAGATTCTAATCACAAAA | ||
| Shewanella denitrificans OS217 | Sden_3568 | -131 | 3.8 | AGCTGGGAGGCTTATCACAAAA |
| -109 | 4.1 | AGGTGTGATTTTATTAACTTTA | ||
| Shewanella frigidimarina NCIMB 400 | Sfri_0180 | -233 | 3.9 | CAATTTGATATGGTTCCAAAAT |
| -133 | 4.1 | AGCTGAGATTGTTATCACAAAA | ||
| Shewanella amazonensis SB2B | Sama_0246 | -225 | 4 | CAATTTGATGCAGTTCCAATAA |
| Shewanella loihica PV-4 | Shew_0191 | -242 | 3.8 | CAATTTGATATGCTTCCAAAAA |
| -131 | 4.8 | AATTCTGATATTAATCACAAAA | ||
| Shewanella pealeana ATCC 700345 | Spea_0216 | -230 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| -130 | 4 | TGGCGAGATTAATATCACAAAA | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4103 | -230 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| Shewanella piezotolerans WP3 | swp_2044 | -231 | 4.4 | CAATTTGATGTAGTTCGAATAT |
| -131 | 4.8 | TAACGCGATTTAAATCACAAAT | ||
| Shewanella sediminis HAW-EB3 | Ssed_4286 | -145 | 4.4 | AGCTTTGATTGAAATCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4658 | -256 | 3.8 | CAATTTGATATGCTTCCAAAAA |
| -144 | 3.9 | TACTTTGATTAAAGTCATAAAA | ||
|
Position: -57
Score: 3.7 Sequence: AATTGTGATTGTGTTAAGATCC
Locus tag: SVI_4130
|
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| SVI_4130 | -57 | 3.7 | AATTGTGATTGTGTTAAGATCC | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: ccmA | ||||
| Ortholog function: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA | ||||
| Shewanella oneidensis MR-1 | SO0263 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella putrefaciens CN-32 | Sputcn32_3727 | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella sp W3-18-1 | Sputw3181_0188 | -213 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella sp ANA-3 | Shewana3_0231 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella sp MR-4 | Shewmr4_0231 | -222 | 4.2 | TTTTGTGATTAGAATCTCAGCA |
| Shewanella sp MR-7 | Shewmr7_0226 | -222 | 3.9 | TTTTGTGATTAGAATCTCAGCG |
| Shewanella baltica OS155 | Sbal_0228 | -212 | 4.4 | TTTTGTGATTAGAATCTCAACA |
| Shewanella denitrificans OS217 | Sden_3569 | -186 | 4 | TTTTGTGATAAGCCTCCCAGCT |
| Shewanella frigidimarina NCIMB 400 | Sfri_0179 | -213 | 4.2 | TTTTGTGATAACAATCTCAGCT |
| Shewanella amazonensis SB2B | Sama_0245 | -207 | 3.8 | TTTTGTGAGTTCCCTCCCAGCT |
| Shewanella loihica PV-4 | Shew_0190 | -223 | 4.8 | TTTTGTGATTAATATCAGAATT |
| Shewanella pealeana ATCC 700345 | Spea_0215 | -212 | 4.1 | TTTTGTGATATTAATCTCGCCA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella halifaxensis HAW-EB4 | Shal_4104 | -212 | 3.9 | TTTTGTGACATAAACCGTACTA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella piezotolerans WP3 | swp_2043 | -212 | 5 | ATTTGTGATTTAAATCGCGTTA |
| -112 | 3.8 | ATATTCGAACTACATCAAATTG | ||
| Shewanella sediminis HAW-EB3 | Ssed_4287 | -223 | 4.5 | TTTTGTGATTTCAATCAAAGCT |
| Shewanella woodyi ATCC 51908 | Swoo_4659 | -224 | 4.2 | TTTTATGACTTTAATCAAAGTA |
|
Position: -221
Score: 4.7 Sequence: TGATGTGAGCACTGTCACATAT
Locus tag: SVI_4247
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| SVI_4247 | -221 | 4.7 | TGATGTGAGCACTGTCACATAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: moaA | ||||
| Ortholog function: molybdenum cofactor biosynthesis protein MoaA | ||||
| Shewanella oneidensis MR-1 | SO4452 | -220 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella putrefaciens CN-32 | Sputcn32_0389 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp W3-18-1 | Sputw3181_0243 | -187 | 3.8 | TTGGGTGAGGACTGTCACAGAT |
| Shewanella sp ANA-3 | Shewana3_0274 | -187 | 3.8 | TTGGGTGAGCACTGTCACAGAT |
| Shewanella sp MR-4 | Shewmr4_0273 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella sp MR-7 | Shewmr7_3748 | -187 | 3.9 | TTGGGTGAGCGCTGTCACAGTT |
| Shewanella baltica OS155 | Sbal_0284 | -187 | 4 | TTAGGTGAGGACTGTCACAGAT |
| Shewanella denitrificans OS217 | Sden_0101 | -186 | 4.3 | TGAGGTGAGCTGTGTCACAAAA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0082 | -186 | 4.5 | TAGCGTGAGTCGAGTCACAAAT |
| Shewanella amazonensis SB2B | Sama_3524 | -180 | 4 | CTGAGTGAGCGGCGTCACAATT |
| Shewanella loihica PV-4 | Shew_0087 | -189 | 4.4 | CTTCGTGAGCGGTGTCACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4120 | -222 | 4.1 | TGCCGTGATAACTGTCACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0122 | -222 | 4.3 | TGGCGTGATAACTGTCACAAAA |
| Shewanella piezotolerans WP3 | swp_5009 | -222 | 4.3 | TGAGGTGATTAGTGTCACAAAA |
| Shewanella sediminis HAW-EB3 | Ssed_4402 | -221 | 4.4 | GTATGTGAGGGGTGTCACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4793 | -222 | 4.3 | GAATGTGAGTGTCGTCACAAAA |
|
Position: -147
Score: 4.7 Sequence: ATATGTGACAGTGCTCACATCA
Locus tag: SVI_4248
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| SVI_4248 | -147 | 4.7 | ATATGTGACAGTGCTCACATCA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: etfD | ||||
| Ortholog function: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) | ||||
| Shewanella oneidensis MR-1 | SO4453 | -171 | 4.3 | ATCTGTGACAGTGCTCACCCAA |
| Shewanella putrefaciens CN-32 | Sputcn32_0388 | -171 | 4.2 | ATCTGTGACAGTCCTCACCCAA |
| Shewanella sp W3-18-1 | Sputw3181_0242 | -171 | 4.2 | ATCTGTGACAGTCCTCACCCAA |
| Shewanella sp ANA-3 | Shewana3_0273 | -175 | 4.3 | ATCTGTGACAGTGCTCACCCAA |
| Shewanella sp MR-4 | Shewmr4_0272 | -175 | 4.3 | AACTGTGACAGCGCTCACCCAA |
| Shewanella sp MR-7 | Shewmr7_3749 | -175 | 4.3 | AACTGTGACAGCGCTCACCCAA |
| Shewanella baltica OS155 | Sbal_0283 | -170 | 4.4 | ATCTGTGACAGTCCTCACCTAA |
| Shewanella denitrificans OS217 | Sden_0100 | -130 | 4.6 | TTTTGTGACACAGCTCACCTCA |
| Shewanella frigidimarina NCIMB 400 | Sfri_0081 | -159 | 4.7 | ATTTGTGACTCGACTCACGCTA |
| Shewanella amazonensis SB2B | Sama_3523 | -157 | 4.3 | AATTGTGACGCCGCTCACTCAG |
| Shewanella loihica PV-4 | Shew_0086 | -148 | 4.5 | TAATGTGACACCGCTCACGAAG |
| Shewanella pealeana ATCC 700345 | Spea_4121 | -181 | 4.1 | TTTTGTGACAGTTATCACGGCA |
| Shewanella halifaxensis HAW-EB4 | Shal_0121 | -180 | 4.2 | TTTTGTGACAGTTATCACGCCA |
| Shewanella piezotolerans WP3 | swp_5010 | -176 | 4.4 | TTTTGTGACACTAATCACCTCA |
| Shewanella sediminis HAW-EB3 | Ssed_4403 | -150 | 4.8 | TTTTGTGACACCCCTCACATAC |
| Shewanella woodyi ATCC 51908 | Swoo_4794 | -135 | 4.7 | TTTTGTGACGACACTCACATTC |
|
Position: -166
Score: 4.2 Sequence: AAGTGTGATCCAGCTTGTATTT
Locus tag: SVI_4276
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| SVI_4276 | -166 | 4.2 | AAGTGTGATCCAGCTTGTATTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: hutC | ||||
| Ortholog function: histidine utilization repressor | ||||
| Shewanella oneidensis MR-1 | SO0096 | -151 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella putrefaciens CN-32 | Sputcn32_0078 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp W3-18-1 | Sputw3181_3999 | -178 | 4.1 | TTATGTGAGCTGGCTTGTATTT |
| Shewanella sp ANA-3 | Shewana3_0099 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella sp MR-4 | Shewmr4_0098 | -142 | 4.1 | TTATGTGAGCCAGCTTGTATTT |
| Shewanella sp MR-7 | Shewmr7_0093 | -142 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella baltica OS155 | Sbal_4253 | -177 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella loihica PV-4 | Shew_3758 | -138 | 4.1 | TTATGTGAGCTAGCTTGTATTT |
| Shewanella pealeana ATCC 700345 | Spea_4170 | -106 | 3.8 | ATTTGTGAGCTAGCTTGTGTTT |
| Shewanella halifaxensis HAW-EB4 | Shal_0072 | -106 | 3.9 | ATTTGTGAGCCCGCTTGTATTT |
| Shewanella piezotolerans WP3 | swp_0132 | -177 | 4.2 | ATTTGTGAGCTAGCTTGTATTT |
| Shewanella sediminis HAW-EB3 | Ssed_4448 | -150 | 4.1 | AGTTGTGATCCAACTTGTATTT |
| Shewanella woodyi ATCC 51908 | Swoo_4839 | -201 | 4.1 | AAGTGTGATCCAACTTGTATTT |
|
Position: -111
Score: 4.1 Sequence: ATGTGTGGTCGAACTAACAAAA
Locus tag: SVI_4289
|
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| SVI_4289 | -111 | 4.1 | ATGTGTGGTCGAACTAACAAAA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: SO0075 | ||||
| Ortholog function: long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | ||||
| Shewanella frigidimarina NCIMB 400 | Sfri_3973 | -107 | 4 | AAACGTGACCGTAAGCTCAAAA |
| Shewanella loihica PV-4 | Shew_3776 | -110 | 4.7 | TTTTGTGCTCCAATTAACATTA |
| Shewanella pealeana ATCC 700345 | Spea_4186 | -109 | 4.3 | TTTTGTGTGTTAGTTAACAAAA |
| Shewanella halifaxensis HAW-EB4 | Shal_0063 | -109 | 4.5 | TTTTGTGTTTGAGTTAACAAAA |
| Shewanella woodyi ATCC 51908 | Swoo_4860 | -110 | 4.6 | ATCTGTGATCGGTTTAACACTA |