Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Providencia alcalifaciens DSM 30120

Type Regulator Effector Pathway Genes Sites
TF AcrR Rhodamine 6G; Ethidium bromide; Proflavin Multidrug resistance 1 1
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 9 23
TF BetI Choline Glycine betaine synthesis 2 2
TF Crp Cyclic 3',5'-AMP Carbon catabolism 179 542
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF FabR Unsaturated acyl-ACP; Unsaturated acyl-CoA Fatty acid biosynthesis 3 3
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 10 11
TF Fnr Oxygen Energy metabolism; Anaerobic metabolism 75 216
TF FruR Fructose-1-phosphate; Fructose-1,6-diphosphate Central carbohydrate metabolism 11 14
TF Fur Iron ion, (Fe2+) Iron homeostasis 35 140
TF GcvA Glycine Glycine metabolism 2 3
TF GlpR Glycerol 3-phosphate Glycerol utilization 3 5
TF GntR Gluconate Gluconate utilization 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 1 1
TF HutC cis-Urocanic acid Histidine utilization 3 6
TF IlvY 2-Acetolactate Branched-chain amino acid biosynthesis 2 4
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 2 3
TF LeuO Guanosine 3',5'-bis(diphosphate) 1 4
TF LexA DNA damage SOS response 14 18
TF LysR LL-2,6-Diaminopimelate Lysine biosynthesis 2 2
TF MetR Homocysteine Methionine biosynthesis 5 7
TF ModE Molybdate Molybdopterin biosynthesis; Molybdenum homeostasis 3 3
TF MprA 2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone Multidrug resistance 2 2
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 1 1
TF NadR NAD NAD biosynthesis 1 1
TF NagC N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 3 5
TF NarP Nitrate; Nitrite Nitrate and nitrite respiration 12 19
TF NhaR Potassium ion Osmotic stress response 1 2
TF NrdR Deoxyribonucleotides Ribonucleotide reductases 3 8
TF NsrR Nitric oxide Nitrosative stress response 7 11
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 3
TF PdhR Pyruvate Pyruvate metabolism 4 4
TF PhnR 2-aminoethylphosphonate Phosphonate utilization; 2-aminoethylphosphonate utilization 2 2
TF PurR Hypoxanthine; Guanine Purine metabolism 13 16
TF SoxR Paraquat Superoxide stress response 1 1
TF TrpR Tryptophan Tryptophan biosynthesis 2 2
TF TyrR Tyrosine; Phenylalanine Aromatic amino acid metabolism 4 9
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 3 3
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