Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of FruR regulog to Providencia alcalifaciens DSM 30120

Reference regulog properties
Source regulog: FruR - Enterobacteriales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: activator (repressor)
Biological process: Central carbohydrate metabolism
Effector: Fructose-1-phosphate; Fructose-1,6-diphosphate
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Providencia alcalifaciens DSM 30120
Orthologous TF(s) PROVALCAL_03844
Regulated genes 11
Built upon 213 sites [see more]
Predicted regulatory interactions in Providencia alcalifaciens DSM 30120
Locus tag Position Score Sequence
Position: -159
Score: 5.1
Sequence: GCTGAACCGTTTCAGT
Locus tag: PROVALCAL_00260
PROVALCAL_00260 -159 5.1 GCTGAACCGTTTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: epd
Ortholog function: D-erythrose-4-phosphate dehydrogenase (EC 1.2.1.72)
Escherichia coli str. K-12 substr. MG1655 b2927 -137 5.4 GCTGAAGCGTTTCAGT
Salmonella typhimurium LT2 STM3070 -137 5.4 GCTGAAGCGTTTCAGT
Citrobacter koseri ATCC BAA-895 CKO_04297 -137 5.4 GCTGAAGCGTTTCAGT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03356 -137 5.4 GCTGAAGCGTTTCAGT
Enterobacter sp. 638 Ent638_3340 -139 5.4 GCTGAAGCGTTTCAGT
Erwinia amylovora ATCC 49946 EAM_2813 -131 5.4 GCTGAAGCGTTTCAGT
Yersinia pestis KIM y3309 -161 5.4 GCTGAAGCGTTTCAGT
Serratia proteamaculans 568 Spro_3946 -211 5.4 GCTGAAGCGTTTCAGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3913 -119 5.4 GCTGAAGCGTTTCAGT
Edwardsiella tarda EIB202 ETAE_2958 -136 5.4 GCTGAAGCGTTTCAGT
Proteus mirabilis HI4320 PMI0241 -135 5.1 GCTGAACCGTTTCAGT
Photorhabdus luminescens subsp. laumondii TTO1 plu0955 -139 5.2 GCTGAATCGTTTCATT
Position: -197
Score: 4.6
Sequence: GCTGAAAGGAGTCAGC
Locus tag: PROVALCAL_01796
PROVALCAL_01796 -197 4.6 GCTGAAAGGAGTCAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -264 4.6 GCTGAAAGGTGTCAGC
Salmonella typhimurium LT2 STM1749 -265 4.6 GCTGAAAGGTGTCAGC
Citrobacter koseri ATCC BAA-895 CKO_01318 -265 4.6 GCTGAAAGGTGTCAGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -260 4.5 GCTGAAAGGTATCAGC
Enterobacter sp. 638 Ent638_2304 -276 4.5 GCTGAAAGGTATCAGC
Erwinia amylovora ATCC 49946 EAM_1900 -246 4.6 GCTGAATGGTATCAGC
Yersinia pestis KIM y2023 -309 4.7 GCTGAATGGTGTCAGC
Serratia proteamaculans 568 Spro_2704 -301 4.7 GCTGAATGGTGTCAGC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -338 4.7 GCTGAATGGTGTCAGC
Edwardsiella tarda EIB202 ETAE_1508 -288 4.7 GCTGAATGGTGTCAGC
Proteus mirabilis HI4320 PMI1486 -269 4.6 GCTGAAAGGTGTCAGC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -162 4.5 GCTGAAAGGAATCAGC
Position: -89
Score: 3.7
Sequence: ATTGACACGATTCCGC
Locus tag: PROVALCAL_01817
PROVALCAL_01817 -89 3.7 ATTGACACGATTCCGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Escherichia coli str. K-12 substr. MG1655 b1779 -87 3.7 ATTGACACGATTCCGC
Salmonella typhimurium LT2 STM1290 -87 3.7 ATTGACACGATTCCGC
Citrobacter koseri ATCC BAA-895 CKO_01800 -87 3.7 ATTGACACGATTCCGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01197 -87 3.7 ATTGACACGATTCCGC
Enterobacter sp. 638 Ent638_1675 -87 3.7 ATTGACACGATTCCGC
Erwinia amylovora ATCC 49946 EAM_1931 -78 3.7 ATTGACACGATTCCGC
Yersinia pestis KIM y2165 -78 3.7 ATTGACACGATTCCGC
Serratia proteamaculans 568 Spro_2728 -87 3.7 ATTGACACGATTCCGC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2344 -93 3.7 ATTGACACGATTCCGC
Edwardsiella tarda EIB202 ETAE_1483 -87 3.7 ATTGACACGATTCCGC
Proteus mirabilis HI4320 PMI1504 -88 3.7 ATTGACACGATTCCGC
Photorhabdus luminescens subsp. laumondii TTO1 plu2558 -88 3.7 ATTGACACGATTCCGC
Position: -90
Score: 4
Sequence: AGTGAAACGATATAAC
Position: 22
Score: 3.8
Sequence: ACTTAATCGTTAAAGG
Locus tag: PROVALCAL_02039
PROVALCAL_02039 -90 4 AGTGAAACGATATAAC
22 3.8 ACTTAATCGTTAAAGG
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Escherichia coli str. K-12 substr. MG1655 b1136 -246 4.6 GCTGAATCGCTTAACC
Salmonella typhimurium LT2 STM1238 -246 4.1 GCTGAATCGCTTAACG
Citrobacter koseri ATCC BAA-895 CKO_01835 -247 3.9 GCTGAATCGCTCAACC
Enterobacter sp. 638 Ent638_1649 -192 3.9 GCTGAATCGCTCAACC
Yersinia pestis KIM y1802 -124 4.6 GCTGAATCGGTTAACT
Serratia proteamaculans 568 Spro_2025 -177 5.1 GCTGAATCGTTTAACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -176 5.1 GCTGAATCGTTTAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -184 4.9 GCTGAATCGGTTAAGT
Position: -244
Score: 4.6
Sequence: GCTGAAGCGATACAGG
Position: 33
Score: 4.2
Sequence: CTTGAATGGTTTTTGT
Locus tag: PROVALCAL_02614
PROVALCAL_02614 -244 4.6 GCTGAAGCGATACAGG
33 4.2 CTTGAATGGTTTTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: Catabolite gene activator (cAMP receptor protein), CRP family
Escherichia coli str. K-12 substr. MG1655 b3357 -220 4.3 GCTGAAGCGAGACACC
Salmonella typhimurium LT2 STM3466 -225 4.3 GCTGAAGCGAGACACC
Citrobacter koseri ATCC BAA-895 CKO_04777 -227 4.3 GCTGAAGCGAGACACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03743 -224 4.3 GCTGAAGCGAGACACC
Enterobacter sp. 638 Ent638_3784 -228 4.3 GCTGAAGCGAGACACC
Erwinia amylovora ATCC 49946 EAM_3225 -284 4.4 GCTGAAGCGAGACAAC
Yersinia pestis KIM y3956 -255 4.9 GCTGAAGCGATACAAC
Serratia proteamaculans 568 Spro_4580 -300 4.4 GCTGAAGCGAGACAAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4064 -296 4.4 GCTGAAGCGAGACAAC
Edwardsiella tarda EIB202 ETAE_3299 -242 4.5 GCTGAAGCGAGACAGT
Photorhabdus luminescens subsp. laumondii TTO1 plu0395 -241 4.2 GCTGAAACAATACAAG
Position: -219
Score: 5
Sequence: GCTGAAAGGTTTCAAC
Locus tag: PROVALCAL_03154
PROVALCAL_03154 -219 5 GCTGAAAGGTTTCAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pykF
Ortholog function: Pyruvate kinase (EC 2.7.1.40)
Escherichia coli str. K-12 substr. MG1655 b1676 -221 4.9 CTTGAATGGTTTCAGC
Salmonella typhimurium LT2 STM1378 -221 4.9 CTTGAATGGTTTCAGC
Citrobacter koseri ATCC BAA-895 CKO_01709 -221 4.9 CTTGAATGGTTTCAGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02133 -221 4.9 CTTGAATGGTTTCAGC
Enterobacter sp. 638 Ent638_1768 -221 5 GGTGAATGGTTTCAGC
Erwinia amylovora ATCC 49946 EAM_1657 -226 4.6 TTTGAATGGTTTCAGC
Yersinia pestis KIM y1944 -258 5.1 GTTGAATGGTTTCAGC
Serratia proteamaculans 568 Spro_2187 -239 5.1 GTTGAATGGTTTCAGC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1867 -241 4.7 ATTGAATGGTTTCAGC
Edwardsiella tarda EIB202 ETAE_1850 -230 5.1 GTTGAATGGTTTCAGC
Proteus mirabilis HI4320 PMI1405 -269 5 GTTGAAAGGTTTCAGC
Photorhabdus luminescens subsp. laumondii TTO1 plu2613 -344 5.1 GTTGAATGGTTTCAGC
Position: -129
Score: 4.3
Sequence: GATGGAACGATTCACC
Locus tag: PROVALCAL_03167
PROVALCAL_03167 -129 4.3 GATGGAACGATTCACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppsA
Ortholog function: Phosphoenolpyruvate synthase (EC 2.7.9.2)
Escherichia coli str. K-12 substr. MG1655 b1702 -102 4.6 GCTTGAACGATTCACC
Salmonella typhimurium LT2 STM1349 -103 4.6 GCTTGAACGATTCACC
Citrobacter koseri ATCC BAA-895 CKO_01725 -102 4.6 GCTTGAACGATTCACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02160 -108 4.6 GCTTGAACGATTCACC
Enterobacter sp. 638 Ent638_1745 -103 4.4 GCTTACACGATTCACC
Erwinia amylovora ATCC 49946 EAM_1646 -104 3.7 GCCAGAGCGATTCAAC
Yersinia pestis KIM y1930 -193 4.4 GGTTGATCGATTCACC
Serratia proteamaculans 568 Spro_2174 -132 4.4 GGTTGATCGATTCACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1853 -117 4.4 GGTTGATCGATTCACC
Edwardsiella tarda EIB202 ETAE_1789 -113 4.4 GGTGTAACGATTCACC
Proteus mirabilis HI4320 PMI1421 -124 4.4 GGTTGATCGATTCACC
Photorhabdus luminescens subsp. laumondii TTO1 plu2628 -114 4.4 GGTTGATCGATTCACC
Position: -135
Score: 5
Sequence: GGTGAATCAATTCAGC
Locus tag: PROVALCAL_03620
PROVALCAL_03620 -135 5 GGTGAATCAATTCAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Escherichia coli str. K-12 substr. MG1655 b3916 -121 5.1 CCTGAATCAATTCAGC
Salmonella typhimurium LT2 STM4062 -122 5.1 CCTGAATCAATTCAGC
Citrobacter koseri ATCC BAA-895 CKO_03085 -128 5.1 CCTGAATCAATTCAGC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -119 5.1 CCTGAATCAATTCAGC
Enterobacter sp. 638 Ent638_4056 -170 5.1 CCTGAATCAATTCAGC
Erwinia amylovora ATCC 49946 EAM_0103 -128 3.9 CCTCAACCAATTCAGC
Yersinia pestis KIM y0059 -144 4.9 CTTGAATCAATTCAGC
Serratia proteamaculans 568 Spro_4807 -141 4.9 CTTGAATCAATTCAGC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -136 5.1 CCTGAATCAATTCAGC
Edwardsiella tarda EIB202 ETAE_3450 -219 5.1 CCTGAATCAATTCAGC
Proteus mirabilis HI4320 PMI3203 -119 5.1 GTTGAATCAATTCAGC
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -141 5.1 GTTGAATCAATTCAGC
Position: -268
Score: 4.4
Sequence: GCTGTAACGCTTCAGT
Locus tag: PROVALCAL_03873
PROVALCAL_03873 -268 4.4 GCTGTAACGCTTCAGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase, GntR family
Escherichia coli str. K-12 substr. MG1655 b0113 -251 4.2 AGTGAATCGGTTCAAT
Salmonella typhimurium LT2 STM0151 -253 4.5 GTTGAATCGGTTCAGA
Citrobacter koseri ATCC BAA-895 CKO_03260 -253 4.5 GTTGAATCGGTTCAGA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -251 4.5 GTTGAATCGGTTCAGA
Enterobacter sp. 638 Ent638_0659 -252 4.4 GGTGAATCGGTTCAGA
Erwinia amylovora ATCC 49946 EAM_0746 -213 4.2 GCTGGCTGGTTTCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -254 4.1 ATTTAAACGGTTCAGC
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