Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fnr regulog to Providencia alcalifaciens DSM 30120

Reference regulog properties
Source regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Propagated regulon:
Target genome Providencia alcalifaciens DSM 30120
Orthologous TF(s) PROVALCAL_02945
Regulated genes 75
Built upon 685 sites [see more]
Predicted regulatory interactions in Providencia alcalifaciens DSM 30120
Locus tag Position Score Sequence
Position: -272
Score: 4.9
Sequence: TTGATATGTATCAA
Locus tag: PROVALCAL_00141
PROVALCAL_00141 -272 4.9 TTGATATGTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: arcA
Ortholog function: Aerobic respiration control protein arcA
Citrobacter koseri ATCC BAA-895 CKO_03387 -291 5.1 TTGATATATGTCAA
Edwardsiella tarda EIB202 ETAE_0561 -300 5.1 TTGATATATGTCAA
Enterobacter sp. 638 Ent638_0562 -291 5.1 TTGATATATGTCAA
Erwinia amylovora ATCC 49946 EAM_0640 -399 4.5 TTGATGCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3893 -339 5.1 TTGATATATGTCAA
Escherichia coli str. K-12 substr. MG1655 b4401 -291 5.1 TTGATATATGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04856 -291 5.1 TTGATATATGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0562 -282 4.9 TTGATGTACGTCAA
Proteus mirabilis HI4320 PMI3719 -343 4 ATTACATAAATCAA
-282 4.6 TTGATATGTGTCAA
Salmonella typhimurium LT2 STM4598 -291 5.1 TTGATATATGTCAA
Serratia proteamaculans 568 Spro_0681 -299 5.1 TTGATATATGTCAA
Yersinia pestis KIM y3721 -298 5.1 TTGATATATGTCAA
Position: 6
Score: 3.2
Sequence: TGGTTATTAATAAA
Locus tag: PROVALCAL_00343
PROVALCAL_00343 6 3.2 TGGTTATTAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmB
Ortholog function: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Edwardsiella tarda EIB202 ETAE_2460 -396 4.3 TTGCTATATATCAG
5 3.5 GCGATTAAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1883 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2200 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02080 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2253 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3818 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1568 -302 4 TGGATTTTTAACAA
Position: 0
Score: 4.1
Sequence: ATGATTAAAATTAA
Locus tag: PROVALCAL_00407
PROVALCAL_00407 0 4.1 ATGATTAAAATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nqrA
Ortholog function: Na-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00239 0 4.2 ATGATTAAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu1196 -205 4.1 TTGAACTAAATCAC
Proteus mirabilis HI4320 PMI0352 -205 4.2 TTGAGCTAAATCAC
Serratia proteamaculans 568 Spro_0953 0 4.3 ATGATTAAAATCAG
Yersinia pestis KIM y0951 18 4.2 ATGATTAAAATAAA
Position: -254
Score: 4.1
Sequence: ATGATTGAAATAAA
Position: -114
Score: 4
Sequence: ATGATTTTCATTAA
Locus tag: PROVALCAL_00441
PROVALCAL_00441 -254 4.1 ATGATTGAAATAAA
-114 4 ATGATTTTCATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Enterobacter sp. 638 Ent638_4063 -132 3.6 ATGATACAAAAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -143 3.5 ATGAAGTAAAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -146 4.2 TTGTTCTACATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -346 3.6 TTATGTCAAATCAA
Proteus mirabilis HI4320 PMI3036 -164 3.8 TTTATTTAAAATAA
-85 4 ATGATTTTCATTAA
Position: -267
Score: 4
Sequence: TTCATTACAGTCAA
Position: -211
Score: 3.4
Sequence: TTTTTTTGTGACAA
Position: -147
Score: 3.3
Sequence: ATGAGTAAAAAAAA
Locus tag: PROVALCAL_00470
PROVALCAL_00470 -267 4 TTCATTACAGTCAA
-211 3.4 TTTTTTTGTGACAA
-147 3.3 ATGAGTAAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0051 -232 4.7 TTGTTATATAACAA
Escherichia coli str. K-12 substr. MG1655 b1761 -397 3.9 TTGATCCTGATAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0122 -272 4 ATGATGAATGACAA
Proteus mirabilis HI4320 PMI3008 -176 3.6 TTTAGTGAGGTCAA
Salmonella typhimurium LT2 STM1299 -51 3.4 CTGATAAAACGCAA
Yersinia pestis KIM y3858 -231 3.6 TTGAGTAACGTTAA
Position: -321
Score: 3.9
Sequence: TTGTTACAGATAAA
Position: -159
Score: 3.9
Sequence: ATGAAATAGGTCAA
Locus tag: PROVALCAL_00594
PROVALCAL_00594 -321 3.9 TTGTTACAGATAAA
-159 3.9 ATGAAATAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citC
Ortholog function: [Citrate [pro-3S]-lyase] ligase (EC 6.2.1.22)
Citrobacter koseri ATCC BAA-895 CKO_02541 -184 4.1 GTGAAATAAATCAA
Enterobacter sp. 638 Ent638_3375 19 4.1 TTTATAAAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2574 -93 3.8 TTGAGCCAAATAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00034 -125 3.6 TTAATTAACAACAT
Salmonella typhimurium LT2 STM0058 -227 4.2 TTGATGGGTAACAA
Position: -85
Score: 4.5
Sequence: ATGATCCACATCAA
Locus tag: PROVALCAL_00821
PROVALCAL_00821 -85 4.5 ATGATCCACATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: Formate efflux transporter (TC 2.A.44 family)
Citrobacter koseri ATCC BAA-895 CKO_02167 -116 4.9 ATGATCTATATCAA
Edwardsiella tarda EIB202 ETAE_2181 -117 4.2 ATGATCCATGTCAA
Enterobacter sp. 638 Ent638_1424 -74 4.9 ATGATCTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -228 4 ATGATTTTTATTAA
-75 4.5 ATGATCCACATCAA
Escherichia coli str. K-12 substr. MG1655 b0904 -74 4.9 ATGATCTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -117 4.9 ATGATCTATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -267 4.1 TTTATTTGCAACAA
-159 4.7 TTTATTAAAATCAA
-84 4.9 ATGATCTATATCAA
Proteus mirabilis HI4320 PMI0706 -159 4.1 TTATTATTAATCAA
-85 4.5 ATGATCCATATCAA
Salmonella typhimurium LT2 STM0974 -74 4.9 ATGATCTATATCAA
Serratia proteamaculans 568 Spro_1703 -143 3.9 ATAATTTAACTCAA
-81 4.6 ATGATCCAAATCAA
Yersinia pestis KIM y2789 -80 4.5 ATGATCCATATCAA
Position: -35
Score: 3.5
Sequence: ATCATGTTCGTCAA
Locus tag: PROVALCAL_00824
PROVALCAL_00824 -35 3.5 ATCATGTTCGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ansB
Ortholog function: L-asparaginase (EC 3.5.1.1)
Edwardsiella tarda EIB202 ETAE_2179 0 3.7 ATGAAGTTAGTCAA
Escherichia coli str. K-12 substr. MG1655 b2957 -71 4.5 TTGTTTAACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1616 -55 3.7 TTTATTGTTATCAT
Proteus mirabilis HI4320 PMI0708 -139 4.2 TTGATTTTAAATAA
Yersinia pestis KIM y2787 0 3.6 ATGAAATATATAAA
Position: -177
Score: 5
Sequence: TTGATCTGAATCAA
Position: -77
Score: 4.2
Sequence: TTGATTTTAGGCAA
Locus tag: PROVALCAL_00928
PROVALCAL_00928 -177 5 TTGATCTGAATCAA
-77 4.2 TTGATTTTAGGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fdnG
Ortholog function: Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing
Enterobacter sp. 638 Ent638_2055 -77 3.9 TTGATTTGACGCAA
Enterobacter sp. 638 Ent638_2054 -77 3.9 TTGATTTGACGCAA
Escherichia coli str. K-12 substr. MG1655 b1474 -133 4.4 TTGAGGTAGGTCAA
Salmonella typhimurium LT2 STM1570 -126 3.9 TTGATTTGACGCAA
Position: -135
Score: 5.2
Sequence: TTGTTTTAAATCAA
Locus tag: PROVALCAL_00971
PROVALCAL_00971 -135 5.2 TTGTTTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nrdD
Ortholog function: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Citrobacter koseri ATCC BAA-895 CKO_03580 -235 4.2 TTGATGCAAATCAC
Edwardsiella tarda EIB202 ETAE_0423 -196 4.7 TTGATTCAGGTCAA
Enterobacter sp. 638 Ent638_0437 -244 4.7 TTGTTCTGAATCAA
-213 4.2 TTGATGCAAATCAC
Erwinia amylovora ATCC 49946 EAM_3059 -106 4.2 TTGCTTCAGGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0375 -182 4.8 TTGCTCTACATCAA
Escherichia coli str. K-12 substr. MG1655 b4238 -249 4.8 TTGAGCTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04646 -248 4.2 TTGTTCTGGGTCAA
-217 4.2 TTGATGCAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4499 -160 4.7 TTGTTTCAGATCAA
Proteus mirabilis HI4320 PMI3451 -184 4.9 TTGATTTAGATCAG
Salmonella typhimurium LT2 STM4452 -249 5 TTGTTCTACATCAA
-218 4.2 TTGATGCAAATCAC
Serratia proteamaculans 568 Spro_0525 -217 4.7 TTGTTCTACGTCAA
Yersinia pestis KIM y0733 -192 4.6 TTGTTCTAGGTCAA
Position: -114
Score: 5.2
Sequence: TTGATAAAAATCAA
Locus tag: PROVALCAL_01488
PROVALCAL_01488 -114 5.2 TTGATAAAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhjA
Ortholog function: Cytochrome c551 peroxidase (EC 1.11.1.5)
Citrobacter koseri ATCC BAA-895 CKO_04957 -73 4.7 TTGATACTTATCAA
Edwardsiella tarda EIB202 ETAE_1715 -117 4.3 TTGACACTTATCAA
Escherichia coli str. K-12 substr. MG1655 b3518 -121 4.7 TTGATTCCTATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Salmonella typhimurium LT2 STM3820 -110 4.7 TTGATACCAATCAA
Serratia proteamaculans 568 Spro_1968 -89 4.6 TTGATTATCGTCAA
Yersinia pestis KIM y0848 -152 4.7 TTGATAAAGGTCAA
Position: -298
Score: 3.8
Sequence: CTTATTAAAAACAA
Position: -148
Score: 4.8
Sequence: TTGATAAATAACAA
Locus tag: PROVALCAL_01489
PROVALCAL_01489 -298 3.8 CTTATTAAAAACAA
-148 4.8 TTGATAAATAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfA
Ortholog function: Hydrogenase-4 component A (EC 1.-.-.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1247 -91 3.5 TTGAATTAAAGAAA
Escherichia coli str. K-12 substr. MG1655 b2481 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI2528 -114 4.9 TTGATTTTTAACAA
Position: 36
Score: 3.4
Sequence: CTGATGATGATCAC
Locus tag: PROVALCAL_01493
PROVALCAL_01493 36 3.4 CTGATGATGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfE
Ortholog function: Hydrogenase-4 component E (EC 1.-.-.-)
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1243 -91 3.5 TTGAATTAAAGAAA
Escherichia coli str. K-12 substr. MG1655 b2485 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI2524 -114 4.9 TTGATTTTTAACAA
Position: -275
Score: 3.7
Sequence: TTGAGTTAAATTAT
Locus tag: PROVALCAL_01504
PROVALCAL_01504 -275 3.7 TTGAGTTAAATTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hyfR
Ortholog function: Formate hydrogenlyase transcriptional activator
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1236 -98 4.1 TTGTGTCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2491 -29 3.8 ATGTTTCATATCAT
Proteus mirabilis HI4320 PMI3580 -64 3.9 TTGATATAAATTTA
Position: -222
Score: 3.3
Sequence: CTGAGCTAACTCAT
Position: -212
Score: 3.8
Sequence: TCATTATAAATCAA
Position: -143
Score: 3.3
Sequence: TTGTTATCTATCTT
Position: -124
Score: 3.3
Sequence: TTGCACTATCACAA
Position: -91
Score: 3.4
Sequence: ATAATTTAGATGAA
Position: -8
Score: 3.2
Sequence: TTGATTGAATGCAT
Locus tag: PROVALCAL_01632
PROVALCAL_01632 -222 3.3 CTGAGCTAACTCAT
-212 3.8 TCATTATAAATCAA
-143 3.3 TTGTTATCTATCTT
-124 3.3 TTGCACTATCACAA
-91 3.4 ATAATTTAGATGAA
-8 3.2 TTGATTGAATGCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ubiC
Ortholog function: Chorismate--pyruvate lyase (EC 4.1.3.40)
Erwinia amylovora ATCC 49946 EAM_0260 -194 3.8 CTGATATTAGTCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0626 -230 3.3 GTGACTAGGGTCAA
Escherichia coli str. K-12 substr. MG1655 b4039 -70 3.4 TTGCTTTACATCTC
Photorhabdus luminescens subsp. laumondii TTO1 plu4378 -253 3.8 TTATTTTTGGTCAA
Proteus mirabilis HI4320 PMI2753 -163 4.3 TTGTTTTTTCTCAA
Serratia proteamaculans 568 Spro_4464 -223 3.6 TTGCTGGAGATCAC
Yersinia pestis KIM y0568 -253 3.3 CTGATATTTATAAT
Position: -169
Score: 3.9
Sequence: ATGATTTAACTAAA
Position: -97
Score: 4.1
Sequence: TTGTTTATAATCAT
Locus tag: PROVALCAL_01648
PROVALCAL_01648 -169 3.9 ATGATTTAACTAAA
-97 4.1 TTGTTTATAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: Malate synthase (EC 2.3.3.9)
Citrobacter koseri ATCC BAA-895 CKO_03906 -162 4.2 TTTATTGTTATCAA
Enterobacter sp. 638 Ent638_0218 -111 4 TTGATTTTAGAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04395 -154 4.1 TTCATTGTTATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -61 4
Proteus mirabilis HI4320 PMI2764 -64 4.2
Position: -180
Score: 5
Sequence: TTGATTTAAATCAT
Position: -128
Score: 5.1
Sequence: TTGATAAATATCAA
Locus tag: PROVALCAL_01743
PROVALCAL_01743 -180 5 TTGATTTAAATCAT
-128 5.1 TTGATAAATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfiD
Ortholog function: Stress-induced alternate pyruvate formate-lyase subunit
Edwardsiella tarda EIB202 ETAE_2732 -27 4.3 TTGCTCTATCTCAA
Proteus mirabilis HI4320 PMI1898 -180 5.2 TTGATTTAAAACAA
-127 5.1 TTGATATTTATCAA
Serratia proteamaculans 568 Spro_3682 -189 4.2 TTGACATAAAACAT
-136 4.9 TTGACTTTAATCAA
Yersinia pestis KIM y1282 -180 4.6 TTGATATAAAACAT
-127 5.1 TTGATTTGAATCAA
Position: -225
Score: 5.1
Sequence: TTGATATTTATCAA
Position: -173
Score: 5.1
Sequence: ATGATTTAAATCAA
Locus tag: PROVALCAL_01744
PROVALCAL_01744 -225 5.1 TTGATATTTATCAA
-173 5.1 ATGATTTAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ung
Ortholog function: Uracil-DNA glycosylase (EC 3.2.2.27)
Citrobacter koseri ATCC BAA-895 CKO_00204 -209 5.6 TTGATTTAAATCAA
-156 5.1 TTGTTTTACATCAA
Edwardsiella tarda EIB202 ETAE_2734 -396 4.1 TTGAGATAGAGCAA
-280 5.4 TTGATCTAAATCAA
-227 4.7 ATGTTTTACATCAA
Enterobacter sp. 638 Ent638_3065 -194 5 TTGACCTAAATCAA
-142 5.1 TTGTTTTATATCAA
34 4.2 CTGATGAAAAACAA
Erwinia amylovora ATCC 49946 EAM_2526 -177 4.9 TTGATGCAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3289 -228 5.1 TTGACTTAAATCAA
-175 5.1 TTGTTTTATATCAA
Escherichia coli str. K-12 substr. MG1655 b2580 -197 5.6 TTGATTTAAATCAA
-144 5.1 TTGTTTTACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02903 -206 5.5 TTGATATAAATCAA
-153 5.1 TTGTTTTACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3371 -233 4.1 TTGATTCAGAACAG
Proteus mirabilis HI4320 PMI1899 -221 5.1 TTGATAAATATCAA
-168 5.2 TTGTTTTAAATCAA
Salmonella typhimurium LT2 STM2647 -208 5.6 TTGATTTAAATCAA
-155 5.1 TTGTTTTACATCAA
Serratia proteamaculans 568 Spro_3683 -222 5 TTGATTAAAGTCAA
-169 4.4 ATGTTTTATGTCAA
Yersinia pestis KIM y1281 -213 5.2 TTGATTCAAATCAA
-160 4.7 ATGTTTTATATCAA
Position: -152
Score: 5.1
Sequence: TTGATTCAAATCAA
Locus tag: PROVALCAL_01779
PROVALCAL_01779 -152 5.1 TTGATTCAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W; colicin S4 receptor; putative transporter
Citrobacter koseri ATCC BAA-895 CKO_01333 -117 4.1 TTAATCTGGATCAA
Edwardsiella tarda EIB202 ETAE_1528 -157 4.9 TTGATGTCTATCAA
Enterobacter sp. 638 Ent638_2283 -117 4.1 TTAATCTGGATCAA
Erwinia amylovora ATCC 49946 EAM_1884 -160 5.4 TTGATCTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2303 -160 4.8 TTGATCTGGATCAA
Escherichia coli str. K-12 substr. MG1655 b1256 -162 4.8 TTGATTTAAATCAC
-117 4.1 TTAATCCAGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -247 4.2 TTGATTTCACTCAT
-80 4.1 TTAATCTGGATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -160 5 TTGATTTGGATCAA
Proteus mirabilis HI4320 PMI1350 -164 4.8 TTGATGTGGATCAA
Salmonella typhimurium LT2 STM1732 -117 4.1 TTAATCTGGATCAA
Serratia proteamaculans 568 Spro_2674 -131 5 TTGATTCAGATCAA
Yersinia pestis KIM y2044 -171 3.6 ATGATAAATGGCAA
-147 4.4 ATGATCCAGATCAA
Position: -170
Score: 4
Sequence: GTGATTTAGATCAC
Locus tag: PROVALCAL_01796
PROVALCAL_01796 -170 4 GTGATTTAGATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Citrobacter koseri ATCC BAA-895 CKO_01318 -238 4.1 TTGATCTGGATCAC
Enterobacter sp. 638 Ent638_2304 -249 4.5 TTGATTCAGATCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -311 3.6 TCGATGTTGATCAC
-305 3.8 TTGATCACAAAAAA
Escherichia coli str. K-12 substr. MG1655 b1241 -237 4.3 TTGATTTGGATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -233 4.7 TTGATCTAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -134 4.5 GTGATTAAGATCAA
Proteus mirabilis HI4320 PMI1486 -242 3.8 GTGATGTAGATCAC
Salmonella typhimurium LT2 STM1749 -238 4.7 TTGATTTAGATCAC
Serratia proteamaculans 568 Spro_2704 -274 4.4 ATGATTTAAATCAC
Position: -101
Score: 4.6
Sequence: TTGACCTGAATCAA
Locus tag: PROVALCAL_01954
PROVALCAL_01954 -101 4.6 TTGACCTGAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: upp
Ortholog function: Uracil phosphoribosyltransferase (EC 2.4.2.9)
Citrobacter koseri ATCC BAA-895 CKO_00293 -103 4.6 TTGATCCATGTCAA
Edwardsiella tarda EIB202 ETAE_1087 -97 4.5 TTGATTGAGATCAT
Enterobacter sp. 638 Ent638_2986 -97 4.4 TTGATCACCGTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1255 -169 4.3 TTGATCTGGATCAG
Escherichia coli str. K-12 substr. MG1655 b2498 -95 4.6 TTGACTAAAGTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02821 -96 5 TTGATATACGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2759 -103 5.1 TTGATGAAAATCAA
Proteus mirabilis HI4320 PMI1574 -97 5.1 TTGATCAATATCAA
Salmonella typhimurium LT2 STM2498 -103 4.6 TTGATCCAGGTCAA
Yersinia pestis KIM y1408 -98 4.4 TTGATCTGAATCAG
Position: -218
Score: 4.7
Sequence: TTGATTCAGGTCAA
Locus tag: PROVALCAL_01955
PROVALCAL_01955 -218 4.7 TTGATTCAGGTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: purM
Ortholog function: Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1)
Edwardsiella tarda EIB202 ETAE_1086 -186 4.7 ATGATCTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1254 -198 4.3 CTGATCCAGATCAA
Escherichia coli str. K-12 substr. MG1655 b2499 -243 4.6 TTGACTTTAGTCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2760 -137 5.2 TTGATTTTCATCAA
Proteus mirabilis HI4320 PMI1575 -148 5 TTGATATTGATCAA
Salmonella typhimurium LT2 STM2499.S -309 4.4 TTGACCTGGATCAA
Yersinia pestis KIM y1407 -312 4.5 CTGATTCAGATCAA
-274 3.7 ATGCTAAAAATCAG
Position: -119
Score: 3.5
Sequence: ATTTGATAAATCAA
Locus tag: PROVALCAL_02039
PROVALCAL_02039 -119 3.5 ATTTGATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: icdA
Ortholog function: Isocitrate dehydrogenase (EC 1.1.1.42)
Edwardsiella tarda EIB202 ETAE_2050 -73 3.9 TTTTATTAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2439 -158 3.7 GTGATTTTTAACAG
Escherichia coli str. K-12 substr. MG1655 b1136 -89 3.6 TTGCTCTAAAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2801 -249 4.8 TTGTTAAATATCAA
Serratia proteamaculans 568 Spro_2025 -3 4.3 TTGATGGAAAGCAA
Yersinia pestis KIM y1802 -106 3.7 GTGATTTTTAACAG
Position: -225
Score: 3.8
Sequence: GTGATTCAAATCAC
Position: -3
Score: 3.5
Sequence: CTCATGTCAAACAA
Locus tag: PROVALCAL_02044
PROVALCAL_02044 -225 3.8 GTGATTCAAATCAC
-3 3.5 CTCATGTCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: Aspartate ammonia-lyase (EC 4.3.1.1)
Edwardsiella tarda EIB202 ETAE_0311 19 3.5 TTGAAGAAGATCTA
Enterobacter sp. 638 Ent638_0326 -184 3.6 TTAATAATTATCAT
Erwinia amylovora ATCC 49946 EAM_0416 -194 4 TTGATATAACACGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -288 4 TTGTTCTAAAATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 0 3.5 ATGTTAAACAACAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -362 4.2 TTGATTTGGATGAA
-198 3.8 ATCACATATATCAA
Proteus mirabilis HI4320 PMI2546 -202 3.7 ATGAGATAGATCAC
Position: -181
Score: 3.6
Sequence: ATGGGTTATATCAA
Locus tag: PROVALCAL_02071
PROVALCAL_02071 -181 3.6 ATGGGTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: Glycerophosphoryl diester phosphodiesterase, periplasmic (EC 3.1.4.46)
Citrobacter koseri ATCC BAA-895 CKO_00538 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3117 -301 3.8 GTGATCAAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4167 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02645 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4120 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3590 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2282 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0198 -305 4.3 TTGATAAGGAACAA
Position: -345
Score: 4.3
Sequence: TTGATAAGGAACAA
Locus tag: PROVALCAL_02072
PROVALCAL_02072 -345 4.3 TTGATAAGGAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: Glycerol-3-phosphate transporter
Citrobacter koseri ATCC BAA-895 CKO_00537 -257 3.7 TCGTTTTTTATCAT
Edwardsiella tarda EIB202 ETAE_3116 -301 3.8 GTGATCAAAATCAC
Enterobacter sp. 638 Ent638_2804 -197 4.2 TTGATTTCGAACAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -249 4.3 TTGATAAAGAGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -214 3.8 TTGATTTCGAGCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -306 4.2 TTGATAAAGAACAG
Proteus mirabilis HI4320 PMI3591 -287 4 TTGATAATGAGCAA
-45 4.9 TTGTTTAATATCAA
Salmonella typhimurium LT2 STM2283 -256 3.7 TCGTTTTTTATCAT
Serratia proteamaculans 568 Spro_0199 -305 4.3 TTGATAAGGAACAA
Position: -112
Score: 4.3
Sequence: TTGTTCCTTATCAA
Locus tag: PROVALCAL_02073
PROVALCAL_02073 -112 4.3 TTGTTCCTTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3)
Citrobacter koseri ATCC BAA-895 CKO_00536 -30 3.8 ATGATAAAAAACGA
Edwardsiella tarda EIB202 ETAE_3115 -78 4.1 TTGCTCCTTATCAA
Enterobacter sp. 638 Ent638_2805 -69 4.3 ATGTTCGAAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -84 4.5 TTGCTCTTTATCAA
Escherichia coli str. K-12 substr. MG1655 b2241 -71 3.6 ATGCGCGAAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -71 4.1 ATGCTCGAAATCAA
Proteus mirabilis HI4320 PMI3592 -107 4.2 TTGCTCATTATCAA
Salmonella typhimurium LT2 STM2284 -30 3.8 ATGATAAAAAACGA
Serratia proteamaculans 568 Spro_0200 -74 4.3 TTGTTCCTTATCAA
Yersinia pestis KIM y0404 -145 4.3 TTGATCACAATCAT
-91 4.4 TTGTTTCTTATCAA
Position: -77
Score: 3.8
Sequence: ACTATTTATATCAA
Locus tag: PROVALCAL_02173
PROVALCAL_02173 -77 3.8 ACTATTTATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gltD
Ortholog function: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Escherichia coli str. K-12 substr. MG1655 b3213 -156 3.9 TTGACCTGTATCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03625 -114 3.9 ATGTTGTACGACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4010 -362 4.1 GTGATATAAATCAC
-334 4.1 CTGATCTATATCAC
Proteus mirabilis HI4320 PMI3676 -353 3.7 TTATCTAACATCAA
-252 4.1 TTTTTATTTATCAA
Serratia proteamaculans 568 Spro_4345 -330 3.6 ATATTAAATATCAA
Yersinia pestis KIM y0129 -72 3.8 CTGTCTGATATCAA
Position: -321
Score: 3.9
Sequence: TTGCGGTGAATCAA
Position: -116
Score: 3.7
Sequence: ATGATGATCATCAT
Position: -20
Score: 3.8
Sequence: ATTATTATCATCAA
Position: -5
Score: 3.7
Sequence: GTGATGTGAATCAT
Position: 4
Score: 3.8
Sequence: ATCATTACTATCAA
Locus tag: PROVALCAL_02226
PROVALCAL_02226 -321 3.9 TTGCGGTGAATCAA
-116 3.7 ATGATGATCATCAT
-20 3.8 ATTATTATCATCAA
-5 3.7 GTGATGTGAATCAT
4 3.8 ATCATTACTATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hypB
Ortholog function: [NiFe] hydrogenase nickel incorporation-associated protein HypB
Salmonella typhimurium LT2 STM2855 -88 3.7 TTGATGAAACTGAA
Position: 34
Score: 4.1
Sequence: TTGTAGTTAATCAA
Locus tag: PROVALCAL_02716
PROVALCAL_02716 34 4.1 TTGTAGTTAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstA
Ortholog function: Phosphate transport system permease protein PstA (TC 3.A.1.7.1)
Citrobacter koseri ATCC BAA-895 CKO_00063 -243 4.4 CTGTTTTTAATCAA
Edwardsiella tarda EIB202 ETAE_3540 -93 3.8 TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4475 -52 3.6 CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655 b3726 -138 3.8 CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu0216 -33 3.9 TTGTTGATTCTCAA
Proteus mirabilis HI4320 PMI2895 -46 4 TTGATAGATGTCGA
Position: -255
Score: 4.1
Sequence: TTCATTTATGACAA
Position: -89
Score: 3.9
Sequence: TTGCCGTAACTCAA
Locus tag: PROVALCAL_02718
PROVALCAL_02718 -255 4.1 TTCATTTATGACAA
-89 3.9 TTGCCGTAACTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pstS
Ortholog function: Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1)
Citrobacter koseri ATCC BAA-895 CKO_00065 -243 4.4 CTGTTTTTAATCAA
Edwardsiella tarda EIB202 ETAE_3538 -93 3.8 TTTACTGTCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4477 -52 3.6 CTGATTGATAACGA
Escherichia coli str. K-12 substr. MG1655 b3728 -138 3.8 CTTATTTAAATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu0214 -33 3.9 TTGTTGATTCTCAA
Proteus mirabilis HI4320 PMI2893 -46 4 TTGATAGATGTCGA
Position: -88
Score: 3.4
Sequence: TTAACTTAGATGAA
Position: -47
Score: 3.5
Sequence: TTTATTCCAATAAA
Locus tag: PROVALCAL_02723
PROVALCAL_02723 -88 3.4 TTAACTTAGATGAA
-47 3.5 TTTATTCCAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoB
Ortholog function: Ferrous iron transport protein B
Citrobacter koseri ATCC BAA-895 CKO_04831 -204 4.1 TTGAGCCATGTCAA
Enterobacter sp. 638 Ent638_3822 -133 4.2 TTGAGCAAGGTCAA
Escherichia coli str. K-12 substr. MG1655 b3409 -203 4.4 TTGAGCCACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03779 -198 3.8 TTGCGGCATATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0208 -206 3.5 TGGATGCAAATCAT
Proteus mirabilis HI4320 PMI2921 -190 5.2 TTGATGTACATCAA
Salmonella typhimurium LT2 STM3506 -204 4.4 TTGAGCCATATCAA
Serratia proteamaculans 568 Spro_4629 -284 3.8 CTGATTTAACTCAC
Yersinia pestis KIM y3911 -93 4 ATTATTTAAATCAT
Position: -304
Score: 3.7
Sequence: TTTATATATTACAA
Position: -210
Score: 4
Sequence: TTGATTACCAACAG
Position: -191
Score: 5
Sequence: TTGATGTAAAACAA
Locus tag: PROVALCAL_02812
PROVALCAL_02812 -304 3.7 TTTATATATTACAA
-210 4 TTGATTACCAACAG
-191 5 TTGATGTAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dmsA
Ortholog function: Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-)
Citrobacter koseri ATCC BAA-895 CKO_02177 -117 3.6 CTGATTTTTCTCAT
Enterobacter sp. 638 Ent638_1418 -3 3.8 TCTATGAAAATCAA
Escherichia coli str. K-12 substr. MG1655 b0894 -184 4.3 TTGATACCGAACAA
Salmonella typhimurium LT2 STM0964 -96 4.2
Yersinia pestis KIM y0864 -199 4.2 TTGATTCCAGACAA
Position: -222
Score: 3.6
Sequence: TTTTTATATATTAA
Position: -198
Score: 4.3
Sequence: TTAATATATGTCAA
Position: -41
Score: 4.6
Sequence: TTGACTCATATCAA
Locus tag: PROVALCAL_02945
PROVALCAL_02945 -222 3.6 TTTTTATATATTAA
-198 4.3 TTAATATATGTCAA
-41 4.6 TTGACTCATATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: fnr
Ortholog function: Fumarate and nitrate reduction regulatory protein
Citrobacter koseri ATCC BAA-895 CKO_01409 -83 3.8 TTGATGTAAAGTAA
Edwardsiella tarda EIB202 ETAE_1744 -133 3.4 GTGCTATACATCAC
-33 4.6 TTGACCGATATCAA
Enterobacter sp. 638 Ent638_1853 -33 4.6 TTGACCAATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2207 -34 4.6 TTGACCAATATCAA
Escherichia coli str. K-12 substr. MG1655 b1334 -33 4.7 TTGACAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01530 -327 4.6 TTGACCAATATCAA
-185 3.5 ATGAGCTTGATCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2179 -35 3.4 TTGAAGGATATGAA
Proteus mirabilis HI4320 PMI1203 -40 4.5 TTGACACATATCAA
Salmonella typhimurium LT2 STM1660.S -33 4.7 TTGACAAATATCAA
Serratia proteamaculans 568 Spro_2582 -34 4.4 TTGACGCATATCAA
Yersinia pestis KIM y2132 -32 4.4 TTGACGCATATCAA
Position: -147
Score: 3.8
Sequence: GTGATATTTGACAA
Position: -27
Score: 3.3
Sequence: TTGGTCCTAATCAG
Locus tag: PROVALCAL_03203
PROVALCAL_03203 -147 3.8 GTGATATTTGACAA
-27 3.3 TTGGTCCTAATCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
Citrobacter koseri ATCC BAA-895 CKO_00756 -337 4 TTGATTACTATCTA
Enterobacter sp. 638 Ent638_2642 -112 3.7 GTGACATAGATCAG
Erwinia amylovora ATCC 49946 EAM_2150 -264 3.8 TTCTCTTAAGTCAA
-169 4 TTTTTTTTAAACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1444 -228 3.3 TTGAGTGGTAACAT
Escherichia coli str. K-12 substr. MG1655 b2029 -375 3.4 ATGGCTTCGATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02499 -322 3.7 TTTTTATAGTTCAA
Proteus mirabilis HI4320 PMI0655 -7 3.7 TTATTTCATGTCAA
Serratia proteamaculans 568 Spro_1608 -384 3.3 ATTATTTGAATTAA
Position: -254
Score: 3.6
Sequence: ATTATTTAAATCCA
Position: 24
Score: 3.3
Sequence: TTGATTTCTCTAGA
Locus tag: PROVALCAL_03225
PROVALCAL_03225 -254 3.6 ATTATTTAAATCCA
24 3.3 TTGATTTCTCTAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moeA
Ortholog function: Molybdopterin biosynthesis protein MoeA
Edwardsiella tarda EIB202 ETAE_1153 -335 3.8 ATGATACAGATCAC
Enterobacter sp. 638 Ent638_1321 -155 3.3 TCTATAAATATCAT
Erwinia amylovora ATCC 49946 EAM_1284 -244 3.5 CTGTGATAAATCAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2836 -383 3.7 ATGATGTAAAGCAG
Escherichia coli str. K-12 substr. MG1655 b0827 18 3.7 TTGATGTCGCTCGA
Photorhabdus luminescens subsp. laumondii TTO1 plu1540 -244 3.9 TTGACAGTGGTCAA
Proteus mirabilis HI4320 PMI0637 -182 3.7 TTAAAATACAACAA
Yersinia pestis KIM y2673 -202 3.8 TTGATATATATATA
Position: -259
Score: 3.5
Sequence: TCGTTGTATATTAA
Locus tag: PROVALCAL_03248
PROVALCAL_03248 -259 3.5 TCGTTGTATATTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: moaA
Ortholog function: Molybdenum cofactor biosynthesis protein MoaA
Citrobacter koseri ATCC BAA-895 CKO_02345 -253 4.7 CTGATGTATATCAA
Edwardsiella tarda EIB202 ETAE_2347 -380 3.9 GTGACATGTATCAA
Enterobacter sp. 638 Ent638_1273 -236 4.4 ATGACGTATATCAA
Erwinia amylovora ATCC 49946 EAM_1218 -212 4.2 TCGCTATATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2817 -321 3.5 ATGACCTGAGACAA
Escherichia coli str. K-12 substr. MG1655 b0781 -263 4.9 ATGATGTATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00810 -257 4 CTGACCGACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1499 -155 3.7 TCGTTTTACATTAA
Salmonella typhimurium LT2 STM0802 -264 5 ATGATATATATCAA
Serratia proteamaculans 568 Spro_1320 -312 3.7 GTGATTCCGGTCAA
Yersinia pestis KIM y3023 -310 4.3 GTGATTTTAAACAA
Position: -113
Score: 4.1
Sequence: TTGTTTTTTATCAC
Locus tag: PROVALCAL_03250
PROVALCAL_03250 -113 4.1 TTGTTTTTTATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ybhK
Ortholog function: Predicted transferase, NAD(P)-binding
Edwardsiella tarda EIB202 ETAE_2348 -92 3.9 TTGATACATGTCAC
Enterobacter sp. 638 Ent638_1272 -90 4.5 TTGATATACGTCAT
Erwinia amylovora ATCC 49946 EAM_1217 -88 4 TTGATATATAGCGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2818 -117 3.7 ATGAGCTTACTCAA
Escherichia coli str. K-12 substr. MG1655 b0780 -147 4.8 TTGATATACATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00809 -91 4 TTGATGTCGGTCAG
Salmonella typhimurium LT2 STM0801 -146 4.8 TTGATATATATCAT
Yersinia pestis KIM y3024 -190 4.2 TTGTTTAAAATCAC
Position: -121
Score: 4.2
Sequence: ATGATATCAATCAT
Locus tag: PROVALCAL_03349
PROVALCAL_03349 -121 4.2 ATGATATCAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: Acetate kinase (EC 2.7.2.1)
Citrobacter koseri ATCC BAA-895 CKO_00498 -92 4.1 ATGATGTTAATCAT
Edwardsiella tarda EIB202 ETAE_2397 -93 4.1 ATGATGTTAATCAT
Enterobacter sp. 638 Ent638_2840 -92 4.1 ATGATGTTAATCAT
Erwinia amylovora ATCC 49946 EAM_2301 -119 3.9 TTGCTTTCGGACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -91 4.1 ATGATGTTAATCAT
Escherichia coli str. K-12 substr. MG1655 b2296 -92 4.1 ATGATGTTAATCAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -91 4.1 ATGATGTTAATCAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -117 4.1 ATGATGTTAATCAT
Proteus mirabilis HI4320 PMI1771 -165 3.7 TTGATGATTGGCAA
Salmonella typhimurium LT2 STM2337 -92 4.1 ATGATGTTAATCAT
Serratia proteamaculans 568 Spro_3316 -121 4.1 ATGATGTTAATCAT
Yersinia pestis KIM y1622 -163 4.1 ATGATGTTAATCAT
Position: -329
Score: 4.4
Sequence: ATTATTTACATCAA
Position: -184
Score: 4.2
Sequence: TTGATTTTACTCAT
Position: -72
Score: 4.7
Sequence: TTAATATAAATCAA
Locus tag: PROVALCAL_03386
PROVALCAL_03386 -329 4.4 ATTATTTACATCAA
-184 4.2 TTGATTTTACTCAT
-72 4.7 TTAATATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Edwardsiella tarda EIB202 ETAE_2844 -271 3.4 TTATTTTTTATTAA
Enterobacter sp. 638 Ent638_2479 -93 3.6 TTGAATTTATACAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -279 3.7 TTTATTTTCATGAA
-243 4.5 TAGATTTAGATCAA
Escherichia coli str. K-12 substr. MG1655 b4123 -283 4 CCGATAAATATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04367 -210 3.4 TCTACTCATATCAA
Proteus mirabilis HI4320 PMI0389 -78 3.4 TTGTTTTTTTGCAA
Salmonella typhimurium LT2 STM4301 -72 3.5 TTCACAAAAATCAG
Serratia proteamaculans 568 Spro_3863 -189 3.8 CAGATTAAAATCAA
Yersinia pestis KIM y0901 -239 3.4 TTAATTTAAAGCAC
Position: -316
Score: 5
Sequence: TTGACATAAATCAA
Locus tag: PROVALCAL_03535
PROVALCAL_03535 -316 5 TTGACATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Proteus mirabilis HI4320 PMI0573 -312 4.5 TTGATGTGGGTCAA
Yersinia pestis KIM y3063 -314 5.1 TTGTTCTAAATCAA
-263 4.4 TTGTCGTAGATCAA
Position: 10
Score: 4
Sequence: TTGTGAAAAAACAA
Locus tag: PROVALCAL_03543
PROVALCAL_03543 10 4 TTGTGAAAAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Citrobacter koseri ATCC BAA-895 CKO_02438 25 3.6 ATGTGAAAAAACAA
Edwardsiella tarda EIB202 ETAE_2588 10 4
Escherichia coli str. K-12 substr. MG1655 b0721 10 3.6 ATGTGAAAAAACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00728 -104 3.6 ATGTGAAAAAACAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1426 -127 4 TTGTGAAAAAACAA
Proteus mirabilis HI4320 PMI0565 -2 4 TTGTGAAAAAACAA
Salmonella typhimurium LT2 STM0732 10 3.6 ATGTGAAAAAACAA
Serratia proteamaculans 568 Spro_1263 -249 4.1 GTGATCTAAATCAC
Yersinia pestis KIM y3071 -224 3.8 ATGTTATCAATCAG
Position: -243
Score: 4.3
Sequence: TTGATTTTCGTCAT
Locus tag: PROVALCAL_03620
PROVALCAL_03620 -243 4.3 TTGATTTTCGTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: pfkA
Ortholog function: 6-phosphofructokinase (EC 2.7.1.11)
Citrobacter koseri ATCC BAA-895 CKO_03085 -132 4 CTGACCTGAATCAA
Edwardsiella tarda EIB202 ETAE_3450 -223 4 CTGACCTGAATCAA
Enterobacter sp. 638 Ent638_4056 -174 4 CTGACCTGAATCAA
Erwinia amylovora ATCC 49946 EAM_0103 -31 4 ATTATTTGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4307 -140 4 CTGACCTGAATCAA
Escherichia coli str. K-12 substr. MG1655 b3916 -125 4 CTGACCTGAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04223 -123 4 CTGACCTGAATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4774 -203 4.1 TTGATCTCAAAAAA
Proteus mirabilis HI4320 PMI3203 -194 3.7 TTAATGCGCATCAA
Salmonella typhimurium LT2 STM4062 -126 4 CTGACCTGAATCAA
Serratia proteamaculans 568 Spro_4807 -145 4.1 GTGACTTGAATCAA
Yersinia pestis KIM y0059 -148 4.2 CTGACTTGAATCAA
Position: -278
Score: 3.9
Sequence: TGGTTATTAATCAA
Position: -248
Score: 3.8
Sequence: GTGATCTTAATCAC
Locus tag: PROVALCAL_03747
PROVALCAL_03747 -278 3.9 TGGTTATTAATCAA
-248 3.8 GTGATCTTAATCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase protein I
Citrobacter koseri ATCC BAA-895 CKO_00079 -122 4.2 TTGTTTGAAATCAC
Enterobacter sp. 638 Ent638_4125 -292 3.7 TTGATTAATATGAC
Erwinia amylovora ATCC 49946 EAM_3481 -124 3.9 TCGATTGAAATCAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -191 3.7 ATGATTGTTAGCAA
Escherichia coli str. K-12 substr. MG1655 b3739 -123 4.2 TTGTTTGAAATCAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -122 4.2 TTGTTTGAAATCAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -225 3.9 ATTATTAAAAACAA
Proteus mirabilis HI4320 PMI3057 -130 4
Salmonella typhimurium LT2 STM3872 -122 4.2 TTGTTTGAAATCAC
Position: -313
Score: 3.7
Sequence: TTAATTTTCATTAA
Position: -259
Score: 3.1
Sequence: ATCATATTTATGAA
Position: -183
Score: 3.2
Sequence: ATGATGTAAAACCT
Position: -155
Score: 3.3
Sequence: TTTTTCTATAATAA
Position: -79
Score: 3.3
Sequence: ACGATAATAATCAT
Locus tag: PROVALCAL_03790
PROVALCAL_03790 -313 3.7 TTAATTTTCATTAA
-259 3.1 ATCATATTTATGAA
-183 3.2 ATGATGTAAAACCT
-155 3.3 TTTTTCTATAATAA
-79 3.3 ACGATAATAATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: napF
Ortholog function: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Escherichia coli str. K-12 substr. MG1655 b2208 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2261 -90 3.3 CTTATTTACAAAAA
Position: 21
Score: 3.3
Sequence: TTTATGAAAGCCAA
Locus tag: PROVALCAL_03792
PROVALCAL_03792 21 3.3 TTTATGAAAGCCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: napA
Ortholog function: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Citrobacter koseri ATCC BAA-895 CKO_00569 -35 3.4 TTGCCCGACATCAG
Escherichia coli str. K-12 substr. MG1655 b2206 -46 3.2 TTGGTCGCTCTCAA
Salmonella typhimurium LT2 STM2259 -90 3.3 CTTATTTACAAAAA
Position: -93
Score: 4.6
Sequence: TTGTGATAAATCAA
Locus tag: PROVALCAL_03797
PROVALCAL_03797 -93 4.6 TTGTGATAAATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ccmC
Ortholog function: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Citrobacter koseri ATCC BAA-895 CKO_00577 -136 3.6 TTGACTGGCGACAA
Edwardsiella tarda EIB202 ETAE_2459 -114 3.5 TTATTGTATATAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1884 -106 4.4 TTGATCTCAATAAA
Escherichia coli str. K-12 substr. MG1655 b2199 -46 3.2 TTGGTCGCTCTCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02079 -326 3.4 GTGATACAAGTCAC
Salmonella typhimurium LT2 STM2252 -90 3.3 CTTATTTACAAAAA
Salmonella typhimurium LT2 STM3817 -110 4.7 TTGATACCAATCAA
Yersinia pestis KIM y1569 -302 4 TGGATTTTTAACAA
Position: -178
Score: 4.5
Sequence: TTAATGTAGATCAA
Position: -133
Score: 4.2
Sequence: TTTATTTAAATAAA
Locus tag: PROVALCAL_03820
PROVALCAL_03820 -178 4.5 TTAATGTAGATCAA
-133 4.2 TTTATTTAAATAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hcp
Ortholog function: Hydroxylamine reductase (EC 1.7.-.-)
Edwardsiella tarda EIB202 ETAE_2215 -113 4.4 TTGCGTTATATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2662 -114 4.4 TTGCGCTAAATCAA
Proteus mirabilis HI4320 PMI2112 -131 4.4 TTGCGTTAGATCAA
Serratia proteamaculans 568 Spro_1666 -66 4.4 TTGCGCTAAATCAA
Yersinia pestis KIM y2819 -115 4.1 TTGCGTCAAATCAA
Position: -134
Score: 4.5
Sequence: ATGATTTAGCTCAA
Locus tag: PROVALCAL_03873
PROVALCAL_03873 -134 4.5 ATGATTTAGCTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Pyruvate dehydrogenase complex transcriptional regulator PdhR, GntR family
Citrobacter koseri ATCC BAA-895 CKO_03260 -116 4.7 CTGATTTCAATCAA
Edwardsiella tarda EIB202 ETAE_0658 -165 4.5 TTGATTGTTAACAA
-139 5 ATGATTTACATCAA
Enterobacter sp. 638 Ent638_0659 -116 4.7 CTGATTTCAATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -116 4.2 GTGATTTAGCTCAA
Escherichia coli str. K-12 substr. MG1655 b0113 -115 4.8 ATGATTTCAATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -114 4.7 CTGATTTCAATCAA
Proteus mirabilis HI4320 PMI2047 -245 4 ATGTGTTTAATCAA
-134 4.2 ATGATTTCGCTCAA
Salmonella typhimurium LT2 STM0151 -116 4.7 CTGATTTCAATCAA
Serratia proteamaculans 568 Spro_4012 -117 4.6 CTGATTTCGATCAA
Yersinia pestis KIM y0766 -135 4.4 ATGATTTCGGTCAA
Position: -149
Score: 5
Sequence: TTGATTTGCATCAA
Locus tag: PROVALCAL_03918
PROVALCAL_03918 -149 5 TTGATTTGCATCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Citrobacter koseri ATCC BAA-895 CKO_01946 -163 5.2 TTGATGTACATCAA
Edwardsiella tarda EIB202 ETAE_2070 -162 5.1 TTGATTTGAATCAA
Enterobacter sp. 638 Ent638_1624 -149 5.1 TTGATTCATATCAA
Erwinia amylovora ATCC 49946 EAM_1473 -146 4.2 TTGACCAGCATCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -149 5.4 TTGATATATATCAA
Escherichia coli str. K-12 substr. MG1655 b1109 -150 5.2 TTGATTAACATCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -148 4.8 TTGATGCACATCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -150 4.2 TTGATGTTGTTCAA
Proteus mirabilis HI4320 PMI0875 -153 5.5 TTGATATAAATCAA
Salmonella typhimurium LT2 STM1211 -150 4.8 TTGATGCACATCAA
Serratia proteamaculans 568 Spro_1926 -149 5.2 TTGATGTACATCAA
Yersinia pestis KIM y1777 -148 5.4 TTGATATATATCAA
Position: -71
Score: 4
Sequence: CTGATTTGAGACAA
Locus tag: PROVALCAL_03932
PROVALCAL_03932 -71 4 CTGATTTGAGACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: Tripeptide aminopeptidase (EC 3.4.11.4)
Citrobacter koseri ATCC BAA-895 CKO_01926 -42 3.3 TTGCTTATTAATAA
Escherichia coli str. K-12 substr. MG1655 b1127 -121 3.7 TTTATATTCATTAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01133 -347 3.5 TTGTTGATGGTCAG
Photorhabdus luminescens subsp. laumondii TTO1 plu2810 -156 3.8 TTGATGAAAAGCAT
Proteus mirabilis HI4320 PMI0882 -92 3.7 TTGATTTAATTAAT
Salmonella typhimurium LT2 STM1227 -375 4.1 TTGTTAATGGTCAA
Serratia proteamaculans 568 Spro_2009 -96 3.6 ATGATTTCCGTTAA
Yersinia pestis KIM y1791 -23 4 TTGATCATGATCAC
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