Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Orthologous regulated operons containing ccmC gene

Properties
Regulog: Fnr - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Energy metabolism; Anaerobic metabolism
Effector: Oxygen
Phylum: Gammaproteobacteria
Built upon 685 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Citrobacter koseri ATCC BAA-895
Position: -136
Score: 3.61
Sequence: TTGACTGGCGACAA
Locus tag: CKO_00577
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: CKO_00578
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: CKO_00579
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
ccmC-ccmD-ccmE -136 3.6 TTGACTGGCGACAA CKO_00577
Edwardsiella tarda EIB202
Position: -114
Score: 3.52
Sequence: TTATTGTATATAAA
Locus tag: ETAE_2459
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: ETAE_2458
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: ETAE_2457
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: ETAE_2456
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: ETAE_2455
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: ETAE_2454
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
Locus tag: ETAE_2453
Name: ccmI
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmI -114 3.5 TTATTGTATATAAA ETAE_2459
Erwinia carotovora subsp. atroseptica SCRI1043
Position: -106
Score: 4.4
Sequence: TTGATCTCAATAAA
Locus tag: ECA1882
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: ECA1883
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: ECA1884
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: ECA1885
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: ECA1886
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: ECA1887
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: ECA1888
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: ECA1889
Name: ccmH1
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
Locus tag: ECA1890
Name: ccmH2
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH1-ccmH2 -106 4.4 TTGATCTCAATAAA ECA1882
Escherichia coli str. K-12 substr. MG1655
Position: -46
Score: 3.24
Sequence: TTGGTCGCTCTCAA
Locus tag: b2208
Name: napF
Funciton: Ferredoxin-type protein NapF (periplasmic nitrate reductase)
Locus tag: b2207
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: b2206
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: b2205
Name: napG
Funciton: Ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: b2204
Name: napH
Funciton: Polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: b2203
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: b2202
Name: napC
Funciton: Cytochrome c-type protein NapC
Locus tag: b2201
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: b2200
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: b2199
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: b2198
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: b2197
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: b2196
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: b2195
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: b2194
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
napF-napD-napA-napG-napH-napB-napC-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH -46 3.2 TTGGTCGCTCTCAA b2208
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
Position: -326
Score: 3.37
Sequence: GTGATACAAGTCAC
Locus tag: KPN_02084
Name: null
Funciton: hypothetical protein
Locus tag: KPN_02083
Name: null
Funciton: Monooxygenase, FAD-binding; Glucose-methanol-choline oxidoreductase
Locus tag: KPN_02082
Name: null
Funciton: gluconate dehydrogenase cytochrome c subunit, putative
Locus tag: KPN_02081
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: KPN_02080
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: KPN_02079
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: KPN_02078
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: KPN_02077
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: KPN_02076
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: KPN_02075
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: KPN_02074
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
Locus tag: KPN_02073
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
KPN_02084-KPN_02083-KPN_02082-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH-ccmH -326 3.4 GTGATACAAGTCAC KPN_02084
Salmonella typhimurium LT2
Position: -110
Score: 4.72
Sequence: TTGATACCAATCAA
Locus tag: STM3820
Name: null
Funciton: Cytochrome c551 peroxidase (EC 1.11.1.5)
Locus tag: STM3819
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: STM3818
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: STM3817
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: STM3816
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: STM3815
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: STM3814
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: STM3813
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: STM3812
Name: ccmH
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
STM3820-ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-ccmH -110 4.7 TTGATACCAATCAA STM3820
Yersinia pestis KIM
Position: -302
Score: 3.97
Sequence: TGGATTTTTAACAA
Locus tag: y1567
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: y1568
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: y1569
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: y1570
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: y1571
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: y1572
Name: ccmF
Funciton: Cytochrome c heme lyase subunit CcmF
Locus tag: y1573
Name: ccmG
Funciton: Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase
Locus tag: y1574
Name: null
Funciton: Cytochrome c heme lyase subunit CcmL / Cytochrome c heme lyase subunit CcmH
ccmA-ccmB-ccmC-ccmD-ccmE-ccmF-ccmG-y1574 -302 4 TGGATTTTTAACAA y1567