Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Crp regulog to Providencia alcalifaciens DSM 30120

Reference regulog properties
Source regulog: Crp - Enterobacteriales
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator (repressor)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Providencia alcalifaciens DSM 30120
Orthologous TF(s) PROVALCAL_02614
Regulated genes 179
Built upon 2301 sites [see more]
Predicted regulatory interactions in Providencia alcalifaciens DSM 30120
Locus tag Position Score Sequence
Position: -178
Score: 3.5
Sequence: AAACGTGACTTAAAGCAGTAAT
Locus tag: PROVALCAL_00081
PROVALCAL_00081 -178 3.5 AAACGTGACTTAAAGCAGTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hupA
Ortholog function: DNA-binding protein HU-alpha (HU-2)
Escherichia coli str. K-12 substr. MG1655 b4000 -179 3.4 AAACGTGATTTAACGCCTGATT
Citrobacter koseri ATCC BAA-895 CKO_02986 -179 3.4 AAACGTGATTTAACGCCTGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04382 -179 3.4 AAACGTGATTTACCGCCTGAAT
Enterobacter sp. 638 Ent638_0213 -179 3.5 AAACGTGATTTAACGCCTGTTT
Yersinia pestis KIM y0499 -181 3.4 AAACGTGATTTAACGCCTGATT
Serratia proteamaculans 568 Spro_0290 -181 3.4 AAACGTGATTTAACGCCTCATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0238 -197 3.3 AAACGTGATTTAAGGCCTGAAA
Edwardsiella tarda EIB202 ETAE_0183 -182 3.3 AAACGTGATTTAACACCTGATT
Proteus mirabilis HI4320 PMI2771 -183 3.7 AAACGTGATTTAGTGCTTGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0492 -179 3.4 AAACGTGATTTAATGCTTTAAA
Position: -173
Score: 5.6
Sequence: TATTGTGATGCTTATCACAATA
Locus tag: PROVALCAL_00113
PROVALCAL_00113 -173 5.6 TATTGTGATGCTTATCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC2
Ortholog function: Na+ dependent nucleoside transporter
Yersinia pestis KIM y3744 -154 3.8 CTTTGTCAATAACCTCACATAT
-115 5.5 TAATGTGATTATGATCACATTT
Serratia proteamaculans 568 Spro_0659 -181 3.9 AACCGTGACGCATGTCACGTAC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0473 -182 4.9 AATTGTGACGAAGATCACTTTT
Edwardsiella tarda EIB202 ETAE_0482 -232 4.9 TGATGTGATATGCATCACTTTT
Proteus mirabilis HI4320 PMI2418 -180 5.2 TAGTGTGATTTAGATCTCATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu0519 -178 5.5 TTGTGTGATTCACATCACATTT
Position: -280
Score: 4.7
Sequence: TACTGTGATATTGTTCACGGAT
Position: -228
Score: 5
Sequence: AAATGTGATTTGTAGCGCATAA
Locus tag: PROVALCAL_00114
PROVALCAL_00114 -280 4.7 TACTGTGATATTGTTCACGGAT
-228 5 AAATGTGATTTGTAGCGCATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: deoC
Ortholog function: 2-deoxyribose-5-phosphate aldolase
Escherichia coli str. K-12 substr. MG1655 b4381 -149 4.6 TTATTTGAACCAGATCGCATTA
-96 4.5 AATTGTGATGTGTATCGAAGTG
Salmonella typhimurium LT2 STM4567 -133 4.9 TAATTTGATTCAGATCTCATTA
-80 4.2 AACTGTGATGTATATCGAAGTG
Citrobacter koseri ATCC BAA-895 CKO_03410 -134 4.2 TTATTTGAAGTGGATCTCGTTA
-81 4.2 AACTGTGATGTATATCGAAGTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04837 -158 5.2 ATTTGTGATTTTAATCACGTTA
-105 3.7 AACTGTGATGAATGTCGAAGTG
Enterobacter sp. 638 Ent638_0541 -151 4.6 AAATTTGAAGTGGATCTCATTA
-98 3.7 AACTGTGATGAATGTCGAAGTG
Erwinia amylovora ATCC 49946 EAM_0615 -233 4.6 TGATGTGATAATTCTAACATTA
Yersinia pestis KIM y3743 -169 3.7 TGCGGTGAGATGGATCTCAATT
Serratia proteamaculans 568 Spro_0660 -262 4.6 ATTTGTGAACGATATCGCGTTA
-240 5.5 TTTTGTGATGGTCTTCACATAT
-188 3.8 TAGTGTGACTGTGAACGCGAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0727 -282 4.4 AAGTGTGAATGAATGCACAAAA
Proteus mirabilis HI4320 PMI2416 -267 4.4 ATATGTGAGTTACTTCGCAACT
-135 5.6 TTTTGTGATTCTGATCACAATT
-83 4.5 TATTGTGACAGAAAGCACATCT
Position: -93
Score: 3.6
Sequence: AAATGAGTTGTATTTAATATTT
Locus tag: PROVALCAL_00139
PROVALCAL_00139 -93 3.6 AAATGAGTTGTATTTAATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: creA
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b4397 -81 3.7 TATTGAGATTTTGTTCTTAATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04852 -42 3.8 TTTTTTAATAATGGTAACAATA
Serratia proteamaculans 568 Spro_0680 -75 3.8 TTCTGTGACCTAAAACATAAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0561 -111 4 CTTTGTGAAATTATTCTAATAA
Position: -294
Score: 3.9
Sequence: TTTTGCGAAGGGCTTCGAAAAT
Position: -123
Score: 4
Sequence: CGTTGTGATCTCAATTATAAAA
Position: -18
Score: 3.6
Sequence: TTTTTTGAGGTTATTCATATGA
Locus tag: PROVALCAL_00157
PROVALCAL_00157 -294 3.9 TTTTGCGAAGGGCTTCGAAAAT
-123 4 CGTTGTGATCTCAATTATAAAA
-18 3.6 TTTTTTGAGGTTATTCATATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nhaA
Ortholog function: Na+/H+ antiporter NhaA type
Salmonella typhimurium LT2 STM0039 -97 3.7 AAACGAGCTATTCATCATATAT
Yersinia pestis KIM y3704 -147 4.1 AAATGTGATATGCGTTATCAAT
Serratia proteamaculans 568 Spro_0694 -120 4.7 AAGTGTGATATAAATCGCTTAT
Proteus mirabilis HI4320 PMI0011 -110 3.9 ATAAGCGATTGAGATCGAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0587 -122 4.4 TATTGAGATGTAGATCATCAAT
Position: -221
Score: 4.1
Sequence: TTTTGTGAGCTATATAAAAGTC
Position: -128
Score: 3.7
Sequence: AAACATGATATCTAACACACAG
Locus tag: PROVALCAL_00180
PROVALCAL_00180 -221 4.1 TTTTGTGAGCTATATAAAAGTC
-128 3.7 AAACATGATATCTAACACACAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cpdB
Ortholog function: 2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor
Escherichia coli str. K-12 substr. MG1655 b4213 -118 3.8 AACTGTGATAGTGTCATCATTT
-85 3.8 AATTGTGGCATTCTTCACTGTT
Salmonella typhimurium LT2 STM4403 -145 3.7 TTCTGTGAACACTCGCAAAAAA
Citrobacter koseri ATCC BAA-895 CKO_03616 -25 4.2 TTTTGTGTTTCAGATCTAAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04607 -156 3.8 TTGTTTTATTTATATCGCATCA
-87 3.7 TTTTCTGGCAAGATTCACATTT
-35 4.2 TTCTGTGCTATCGCTCATAAAA
Enterobacter sp. 638 Ent638_0392 -34 4 TTTTGTGGCTTGGATCGAAAAA
Yersinia pestis KIM y0653 -148 3.6 AACTGTGAGCGTCTACGCGTTA
-116 3.8 TTTTCTGCCAAACTTCACACTT
-63 4.4 TTTTGCGATACATATCGAATAT
Serratia proteamaculans 568 Spro_0453 -95 3.8 TTTTCTGCCACACTTCACAGTT
Position: -84
Score: 4.5
Sequence: ACATGTGATCATATTAACATAA
Locus tag: PROVALCAL_00223
PROVALCAL_00223 -84 4.5 ACATGTGATCATATTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cyoA
Ortholog function: cytochrome o ubiquinol oxidase subunit II
Yersinia pestis KIM y1021 -137 4.5 ATCTGTGACCCCCTTAACATAA
Serratia proteamaculans 568 Spro_1090 -135 4.2 ATCTGTGACCCCCTTAACAGAA
Proteus mirabilis HI4320 PMI0108 -194 3.6 AAATTATAGTTAATTCACAATA
-147 3.6 TTAATTACTTGTGATCACATTA
-141 4.3 ACTTGTGATCACATTAACACAA
Position: -247
Score: 3.7
Sequence: TAATGTCATAATAATTACCTAT
Position: -223
Score: 3.7
Sequence: TTTTTTGATTTATTTAGACATT
Locus tag: PROVALCAL_00241
PROVALCAL_00241 -247 3.7 TAATGTCATAATAATTACCTAT
-223 3.7 TTTTTTGATTTATTTAGACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: tesB
Ortholog function: Acyl-CoA thioesterase II (EC 3.1.2.-)
Escherichia coli str. K-12 substr. MG1655 b0452 -138 3.9 AAGTGTGGCACACATCACGCAT
Citrobacter koseri ATCC BAA-895 CKO_02706 -135 3.9 AAGTGTGGCATATCTCACTTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00415 -139 3.8 AAGTGTGGCACAGATCTCAGAT
Enterobacter sp. 638 Ent638_0920 -131 4 AAGTGTGGCACATATCACTTAT
Yersinia pestis KIM y1043 -153 3.6 TAGCGTGCTAATTATAGCATAA
Serratia proteamaculans 568 Spro_1111 -54 3.6 TGCCGTGATATTCCGCACACTG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1162 -154 3.7 TAGTATGATTCAATAAACACAA
Position: -122
Score: 4.5
Sequence: TTATGTTAATACGATCACAATT
Locus tag: PROVALCAL_00335
PROVALCAL_00335 -122 4.5 TTATGTTAATACGATCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaG
Ortholog function: 4-hydroxyphenylacetate catabolism
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04789 -125 4.4 TTGTGTTAATCCGATCACAAAA
Serratia proteamaculans 568 Spro_0625 -123 5 TTTTGTTATCACGATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu0990 -159 3.7 AATAATGATAAAAAACAAATTT
-129 4.9 TATTGTTACTGAGATCACAATT
Position: -331
Score: 5.1
Sequence: AATTGTGATCGTATTAACATAA
Locus tag: PROVALCAL_00336
PROVALCAL_00336 -331 5.1 AATTGTGATCGTATTAACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: hpaR
Ortholog function: 4-hydroxyphenylacetate catabolism
Yersinia pestis KIM y2548 -253 5 ATTCGTGATCTTGATAACAATT
Serratia proteamaculans 568 Spro_0624 -224 5.2 ATTTGTGATCGTGATAACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0991 -285 3.9 AATTTTAATTGTGATCTCAGTA
-279 5 AATTGTGATCTCAGTAACAATA
Position: -228
Score: 4
Sequence: AGAAGTGACCTAGTTCAAGCAA
Locus tag: PROVALCAL_00406
PROVALCAL_00406 -228 4 AGAAGTGACCTAGTTCAAGCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yafK
Ortholog function: hypothetical protein
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00238 -208 3.7 AAATGCGAGCTATTGCGCAAAG
Yersinia pestis KIM y0949 -217 3.7 TTATTTTATACAAAACATATAT
Serratia proteamaculans 568 Spro_0952 -136 4.2 TTTTTTTATACACAACACATAT
Proteus mirabilis HI4320 PMI0351 -297 3.7 AATTGTTACTATTTTCTCTTAT
-228 3.7 TCGAGTGATTTAGCTCAAGCAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1195 -232 3.9 TCAAGTGATTTAGTTCAAGCAA
Position: -98
Score: 4.4
Sequence: ATACGTGATCTTCCGCGCAAAA
Locus tag: PROVALCAL_00440
PROVALCAL_00440 -98 4.4 ATACGTGATCTTCCGCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acs
Ortholog function: acetyl-coenzyme A synthetase
Escherichia coli str. K-12 substr. MG1655 b4069 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Salmonella typhimurium LT2 STM4275 -100 4.1 TTGCGTGATCTGTCGCCCAAAT
Citrobacter koseri ATCC BAA-895 CKO_03816 -101 4.3 TTGCGTGATCTGCCGCGCAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04478 -101 3.9 TTGCGTGATCTGCCCCCCAATT
Enterobacter sp. 638 Ent638_0276 -101 4.1 TTGCGTGATCTGTCGCCCAAAT
Yersinia pestis KIM y0510 -97 4.2 ATACGTGATCTGCCGCCCAAAA
Serratia proteamaculans 568 Spro_0297 -97 4 TTGCGTGATCTGCCGCCCAAAA
Proteus mirabilis HI4320 PMI3037 -97 4.5 TTTCGTGATCTTATGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0074 -98 4.2 TTGCGTGATCTTCCGCGCAAAA
Position: -320
Score: 3.9
Sequence: TTTTGCGCGGAAGATCACGTAT
Locus tag: PROVALCAL_00441
PROVALCAL_00441 -320 3.9 TTTTGCGCGGAAGATCACGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: Manganese superoxide dismutase (EC 1.15.1.1)
Escherichia coli str. K-12 substr. MG1655 b3908 -161 3.8 GTGGGTGATTTGCTTCACATCT
Citrobacter koseri ATCC BAA-895 CKO_03093 -150 4.4 ACGGGTGATTTGGCTCACATAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -150 4 TTAGTTGTTCTACATCACAAAA
Enterobacter sp. 638 Ent638_4063 -160 3.6 CCGCGTGAGCAGACTCACAATT
Proteus mirabilis HI4320 PMI3036 -292 3.7 TTTTGCGCATAAGATCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -297 3.7 TTTTGCGCGGAAGATCACGCAA
Position: -194
Score: 4
Sequence: TTTTTTGTTTTATTTTACAATA
Position: -177
Score: 3.5
Sequence: CAATATGTTGTAAATAAAATAT
Position: -77
Score: 4.3
Sequence: TTTTTTGATATGCGTCATAGTT
Position: -4
Score: 3.7
Sequence: TGTTATGACAGAGTTAAAAAAA
Locus tag: PROVALCAL_00459
PROVALCAL_00459 -194 4 TTTTTTGTTTTATTTTACAATA
-177 3.5 CAATATGTTGTAAATAAAATAT
-77 4.3 TTTTTTGATATGCGTCATAGTT
-4 3.7 TGTTATGACAGAGTTAAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: nudE
Ortholog function: ADP compounds hydrolase NudE (EC 3.6.1.-)
Escherichia coli str. K-12 substr. MG1655 b3397 -53 3.7 AAGCGTGTCCGATATCGCACAA
Citrobacter koseri ATCC BAA-895 CKO_04820 -54 4.1 AACCGTGCTGTATATCGCACAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03768 -54 4 AAGCGTGTTGCGTATCGCACAA
Enterobacter sp. 638 Ent638_3810 -55 3.6 AACCGTGCGTCATATCGCACAA
Yersinia pestis KIM y3923 -247 4.5 CAATGTGATCAAGTTCTAATAT
Serratia proteamaculans 568 Spro_4612 -135 4.4 CAATGTGATCAAGATCGGATTT
Edwardsiella tarda EIB202 ETAE_3268 -116 3.6 AAATATGAGCATCTGCGCACAA
Position: -222
Score: 4.2
Sequence: AACTATGACGCATATCAAAAAA
Position: -105
Score: 3.8
Sequence: TATTGTAAAATAAAACAAAAAA
Locus tag: PROVALCAL_00460
PROVALCAL_00460 -222 4.2 AACTATGACGCATATCAAAAAA
-105 3.8 TATTGTAAAATAAAACAAAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: igaA
Ortholog function: IgaA: a membrane protein that prevents overactivation of the Rcs regulatory system
Escherichia coli str. K-12 substr. MG1655 b3398 -288 3.6 TTGTGCGATATCGGACACGCTT
-123 3.8 TACTGTGATGTGCTTAATGATG
Salmonella typhimurium LT2 STM3495 -238 3.6 TTATGTAACGTAATAAAAATTA
Citrobacter koseri ATCC BAA-895 CKO_04821 -290 3.9 TTGTGCGATATACAGCACGGTT
-238 3.7 TTATGTAACGTAGTAAAAATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03769 -282 3.8 TTGTGCGATACGCAACACGCTT
Enterobacter sp. 638 Ent638_3811 -287 3.7 TTGTGCGATATGACGCACGGTT
Yersinia pestis KIM y3922 -186 3.7 TATTGTGACTGCGTTAGCTTTG
Position: -90
Score: 4.3
Sequence: TAACGTGCTCTAAGTCTCATTA
Position: -4
Score: 3.7
Sequence: ATTTATGATCGTCGGCAGAATA
Locus tag: PROVALCAL_00463
PROVALCAL_00463 -90 4.3 TAACGTGCTCTAAGTCTCATTA
-4 3.7 ATTTATGATCGTCGGCAGAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pck
Ortholog function: Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b3403 -240 4.2 GAATGCGATTCCACTCACAATA
-137 4 TTTCGTGACAGGAATCACGGAG
Salmonella typhimurium LT2 STM3500 -241 4 GAATGCGATTACAGTCACATTA
-107 3.9 AATCGTGATTTTGTCCAGATAC
Citrobacter koseri ATCC BAA-895 CKO_04825 -107 3.9 AATCGTGATTTTGTCCAGATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03773 -242 3.7 GAAAGCGATTACATTCACATTT
-138 3.7 CTTCGTGACAGGAGTCACCGTT
Enterobacter sp. 638 Ent638_3816 -241 4.1 GTATGCGATTACATTCACATTA
Yersinia pestis KIM y3918 -130 4.2 ATTCGTGTTCCATCTCTCATAA
-80 3.8 ATATTTGATAGCTATCGCTGTT
Serratia proteamaculans 568 Spro_4617 -80 4.1 ATATTTGATACCTATCGCGGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4106 -81 4 TTTTATGATTGCTATCGCGGTT
Edwardsiella tarda EIB202 ETAE_3277 -82 3.9 TTTTTTGATGACTATCTCGGTT
Proteus mirabilis HI4320 PMI3015 -131 4 ATTTGTGCATTAGTTCTCGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0100 -86 3.8 TTTTTTGATAACTATCGCTGTT
Position: -170
Score: 3.7
Sequence: TGATGTTATTGTTTTATCAAAT
Position: -114
Score: 3.7
Sequence: AGATGTGATCAAAACGACACTT
Locus tag: PROVALCAL_00469
PROVALCAL_00469 -170 3.7 TGATGTTATTGTTTTATCAAAT
-114 3.7 AGATGTGATCAAAACGACACTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: uspA3
Ortholog function: Universal stress protein A
Enterobacter sp. 638 Ent638_3909 -195 3.8 AAAGTCGATCGGGTTCACGTTT
Yersinia pestis KIM y3859 -151 3.6 ATTAGTGATCATTGTCAAAACC
Serratia proteamaculans 568 Spro_4691 -123 4 CAGTGTGATCGCCTCAACATAT
Proteus mirabilis HI4320 PMI3009 -290 3.6 AGTTGTTCGCTTTTTCAAAAAA
-113 3.8 AGTTGTGATCAAGGCAACATCT
Position: -254
Score: 3.2
Sequence: AATTGAAAAACTATTCACTAAA
Position: -49
Score: 4.3
Sequence: AATAGTGAGGCATCTCACAACA
Locus tag: PROVALCAL_00470
PROVALCAL_00470 -254 3.2 AATTGAAAAACTATTCACTAAA
-49 4.3 AATAGTGAGGCATCTCACAACA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gdhA
Ortholog function: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Escherichia coli str. K-12 substr. MG1655 b1761 -106 3.5 TTTCTTGCTTACCGTCACATTC
Salmonella typhimurium LT2 STM1299 -107 3.6 TTTCTTGCTTACCGTCACATTG
-55 3.6 TATTCTGATAAAACGCAAATAC
Citrobacter koseri ATCC BAA-895 CKO_01789 -107 3.4 TTTCTTGCTTACCGTCACACTG
Enterobacter sp. 638 Ent638_1685 -110 3.3 AATTTTCACTTGCCTCGCAAAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0051 -234 3.6 TTTTGTTATATAACAAAAACTT
Proteus mirabilis HI4320 PMI3008 -195 3.4 AATCCTGATTTTATTAGCCTTT
-88 3.5 AAACAATATCAACCTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu0122 -92 3.5 AAACACAACTTACCTCACATTT
Position: -244
Score: 4.3
Sequence: ATTTGTGATGTGTCTTTTATTT
Locus tag: PROVALCAL_00505
PROVALCAL_00505 -244 4.3 ATTTGTGATGTGTCTTTTATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: putP
Ortholog function: Proline/sodium symporter PutP (TC 2.A.21.2.1)
Escherichia coli str. K-12 substr. MG1655 b1015 -207 3.6 AAATGTGAGAGAGTGCAACCTG
Salmonella typhimurium LT2 STM1125 -204 3.6 AAATGTGAGAGAGTGCAACCTG
Citrobacter koseri ATCC BAA-895 CKO_02041 -80 3.6 AAATGTGAGAGAGTGCAACCTG
Enterobacter sp. 638 Ent638_1542 -249 3.7 TTTTATGCGGCACTTAACACTT
Serratia proteamaculans 568 Spro_2930 -211 3.9 AAATGTGACGCAGGGTAAACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4218 -130 3.7 TTGTGCAACCTTGTTAACAAAT
Proteus mirabilis HI4320 PMI1615 -220 3.8 TAGTGTGAAGTTACATACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1958 -243 4.4 AAATGTGATTCAGTAAACGTTT
Position: -98
Score: 4.8
Sequence: AATTGAGATTTATGTCACAATA
Locus tag: PROVALCAL_00506
PROVALCAL_00506 -98 4.8 AATTGAGATTTATGTCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cycA2
Ortholog function: D-alanine/D-serine/glycine permease
Escherichia coli str. K-12 substr. MG1655 b4208 -198 4.7 TTTTGTGAGCTGTTTCGCGTTA
Salmonella typhimurium LT2 STM4398 -193 5.1 TTTTGTGAGCTAATTCGCATTA
-170 3.9 CAAAGTGATATAACACTCATTT
Citrobacter koseri ATCC BAA-895 CKO_03624 -199 4.4 TTTTGTGAGCTAATTCGCGTTG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04601 -192 4.7 TTTTGTGAGCTATTTCGCGTTA
-169 3.8 ATGAGTGATATAACACTCACTT
Enterobacter sp. 638 Ent638_0378 -201 4.2 TTTTGTGAGCTGTTTTGCATTG
Yersinia pestis KIM y2447 -199 4.5 CACTGTGATGTACTTAACAAAA
-118 3.7 TAATATTAAATTATTCGCAAAT
Proteus mirabilis HI4320 PMI1614 -102 4.4 TTCTGAGATTTGTGTCACAATA
Photorhabdus luminescens subsp. laumondii TTO1 plu1965 -102 4.6 TATAGTAATCTGTGTCACAATA
Position: -216
Score: 5.2
Sequence: TTATTTGATATGGATCACAAAA
Locus tag: PROVALCAL_00803
PROVALCAL_00803 -216 5.2 TTATTTGATATGGATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: clpS
Ortholog function: ATP-dependent Clp protease adaptor protein
Escherichia coli str. K-12 substr. MG1655 b0881 -164 4 AAATTTGAAGCAGTTAACGCTA
Salmonella typhimurium LT2 STM0944 -164 4 AAATTTGAAGCAGTTAACGCTA
-104 3.6 AGATGTTAGTTATCTATCAATT
Citrobacter koseri ATCC BAA-895 CKO_02199 -164 4 AAATTTGAAGCAGTTAACGCTA
-135 4.2 TAATGTGACAGATGTCGCGGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00914 -167 4 AAATTTGAAGCAGTTAACGCTA
-77 4.3 ATTTGTGATGAGCATAACCTCT
Enterobacter sp. 638 Ent638_1398 -161 3.9 ATTTTTGAAGCAGTTAACGCTA
-132 3.8 GAATGTGACAGATATCGCGGAT
Erwinia amylovora ATCC 49946 EAM_1320 -161 4 AAATTTGAAGCAGTTAACGCTA
-132 4.5 TTTTGTGATAGAGGTCGCTATT
Serratia proteamaculans 568 Spro_1673 -176 3.6 AAGTTTGAAGCAGGTAACGCTA
Edwardsiella tarda EIB202 ETAE_2208 -164 3.8 AAGTTTGAGGCAGTTAACGCAA
-144 3.6 AATTGTGCGGCAGTGCGCTTTT
Proteus mirabilis HI4320 PMI0689 -268 3.7 TGTCTTTATTTACTTAACATTA
-148 4.1 AACTTTGATGTAGCTAACGCTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1593 -170 4.3 AAGTTTGATATAGATAACGATA
Position: -283
Score: 4.6
Sequence: ATATTTAATTTCAATCACATAA
Position: -89
Score: 4.2
Sequence: CTTCATGATCCACATCAAATTT
Locus tag: PROVALCAL_00821
PROVALCAL_00821 -283 4.6 ATATTTAATTTCAATCACATAA
-89 4.2 CTTCATGATCCACATCAAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: focA
Ortholog function: formate transporter
Escherichia coli str. K-12 substr. MG1655 b0904 -156 3.6 TATTTTTATTTGGATAATCAAA
-78 3.8 AGATATGATCTATATCAATTTC
Salmonella typhimurium LT2 STM0974 -78 4.4 AGATATGATCTATATCAAATTC
Citrobacter koseri ATCC BAA-895 CKO_02167 -198 3.6 TATTTTTATTTGGATAATCAAA
-120 4.4 AGATATGATCTATATCAAATTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00932 -121 3.8 AGATATGATCTATATCAATTTC
Enterobacter sp. 638 Ent638_1424 -78 3.8 AGATATGATCTATATCAATTTC
Yersinia pestis KIM y2789 -84 4 CAATATGATCCATATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2596 -79 4.5 CAATATGATCCACATCAAATTT
Proteus mirabilis HI4320 PMI0706 -188 4 TTTTTTGATAAAATTTAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1614 -88 4.7 AATTATGATCTATATCAAATTC
Position: -4
Score: 3.2
Sequence: TTTTATGCAATCCCTGACATTA
Locus tag: PROVALCAL_00838
PROVALCAL_00838 -4 3.2 TTTTATGCAATCCCTGACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroA
Ortholog function: 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19)
Escherichia coli str. K-12 substr. MG1655 b0908 -155 4.8 TTGTGTGATGCAAGCCACATTT
Salmonella typhimurium LT2 STM0978 -142 4.2 TTGTGTGACGCATGCCGCATTT
Citrobacter koseri ATCC BAA-895 CKO_02164 -171 4.6 TTGTGTGACGTAGCGCGCATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00936 -145 3.7 TTGTGTGACGGCGGCCGCGTTT
Enterobacter sp. 638 Ent638_1428 -119 4.4 TTGTGTGACGGTGGACACATTT
Yersinia pestis KIM y2783 -39 3.3 TATAACGATGGCAATCTCAGTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2593 -78 3.5 AAGTATGACGGGTATAAAAATG
Edwardsiella tarda EIB202 ETAE_2177 -104 3.8 TATAGTGACAGCGCTCAATAAA
Position: -97
Score: 4.2
Sequence: CAATGAGATTTGAATCTCATTT
Position: -20
Score: 3.7
Sequence: AATTATTATAAGGATCGAACAT
Locus tag: PROVALCAL_00856
PROVALCAL_00856 -97 4.2 CAATGAGATTTGAATCTCATTT
-20 3.7 AATTATTATAAGGATCGAACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aphA
Ortholog function: acid phosphatase/phosphotransferase
Escherichia coli str. K-12 substr. MG1655 b4055 -130 3.6 CATCCTGCTTTTCATCACAAAA
-57 4 TTTTGCAACAAATCTCACAATA
Salmonella typhimurium LT2 STM4249 -139 3.7 TGTTGTGATCATCCTCTTTTTT
Citrobacter koseri ATCC BAA-895 CKO_03845 -255 3.9 TATTGTGAATGCGTGTACAGAA
-224 3.7 GTGTGTGTGGTTTATCACACAT
Enterobacter sp. 638 Ent638_0259 -57 3.8 TTTTTTGACCATTCGCTCAATT
Edwardsiella tarda EIB202 ETAE_3469 -150 5 TTTTGTGATGAATGTCACGTAT
-98 3.7 AACATAGATCATGATCACATTA
Proteus mirabilis HI4320 PMI0729 -148 4.3 AAGTGTTAGATAGATCAAAAAA
-87 4.3 TAACGTGCGCTATATCTCATTT
-34 4.3 TTCTGTGATTAATATAAAAATT
Position: -95
Score: 4.7
Sequence: CAATTTGAGCCAGTTCACATTT
Locus tag: PROVALCAL_00989
PROVALCAL_00989 -95 4.7 CAATTTGAGCCAGTTCACATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: deaD
Ortholog function: ATP-independent RNA helicase
Salmonella typhimurium LT2 STM3280.S -154 3.9 CTTTTTGATTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_04559 -103 3.9 CTTTTTGATTGCCATCACCTTC
-48 4.4 TACTTTGAGCCGGTTCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03570 -154 3.8 TTTTTTGCTTGCCATCACCTTC
-99 4.4 TACTTTGAGCCGGTTCACACAT
Enterobacter sp. 638 Ent638_3599 -154 4.1 TCTTATGATTGCCATCACCTTA
-99 4.4 TACTTTGAGCCGGTTCACACTT
Erwinia amylovora ATCC 49946 EAM_3065 -99 4.8 TAATTTGAGCCGGTTCACACTT
Yersinia pestis KIM y0696 -96 4.8 TAATTTGAGCCGGTTCACACTT
Serratia proteamaculans 568 Spro_0495 -96 4.8 TAATTTGAGCCGGTTCACACTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0718 -96 4.4 CAATTTGAGCCGGTTCACACTT
Edwardsiella tarda EIB202 ETAE_0411 -96 4.8 TAATTTGAGCCGGTTCACACTT
Proteus mirabilis HI4320 PMI3424 -80 5 TAATTTGAGCCAGTTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4523 -95 5 TAATTTGAGCCAGTTCACATTT
Position: -130
Score: 3.2
Sequence: GGTTGGGAGTTACGTCACGTAT
Locus tag: PROVALCAL_01059
PROVALCAL_01059 -130 3.2 GGTTGGGAGTTACGTCACGTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpdA
Ortholog function: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Escherichia coli str. K-12 substr. MG1655 b0116 -224 3.3 AATTGTTAACAATTTTGTAAAA
Salmonella typhimurium LT2 STM0154 -153 3.5 GTTTGTGAGGTTATTAGCGAAA
Citrobacter koseri ATCC BAA-895 CKO_03256 -95 3.3 AATTGTTAACAATTTTGTAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00120 -105 3.3 AATTGTTAACAATTTTGTAAAA
Yersinia pestis KIM y0769 -253 3.3 ATTGGTGATCTTGTTATTACTG
Serratia proteamaculans 568 Spro_4009 -246 3.6 TATGGTGATGTAATGAAAAAAG
Proteus mirabilis HI4320 PMI2044 -133 3.4 GGTTGTGAGATCTGTCATGTTA
Photorhabdus luminescens subsp. laumondii TTO1 plu3621 -131 3.9 TGTTGCGAGTTCTGTCACGTTA
Position: -182
Score: 4.2
Sequence: TCTTGTGAATGAATTAACATTA
Locus tag: PROVALCAL_01063
PROVALCAL_01063 -182 4.2 TCTTGTGAATGAATTAACATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acnB
Ortholog function: Aconitate hydratase 2 (EC 4.2.1.3)
Escherichia coli str. K-12 substr. MG1655 b0118 -144 3.5 TTTTGTAAACAGATTAACACCT
Salmonella typhimurium LT2 STM0158 -157 3.9 TTTTGTAAACAGATTAACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00124 -260 3.5 TTTTGTAAACAGATTAACACCT
Yersinia pestis KIM y0771 -276 4.3 TTATGTGAACGAATTAACACTG
Serratia proteamaculans 568 Spro_4008 -192 3.9 TTATGTGAACGAATTAACAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3778 -163 4.3 TTATGTGAACGAATTAACAATC
Proteus mirabilis HI4320 PMI2040 -177 4.5 TTATGTGAACGAATTAACATAG
Photorhabdus luminescens subsp. laumondii TTO1 plu3619 -261 3.6 TTCTGTGAACGAATTAACATCG
Position: -58
Score: 4
Sequence: TATTGTTACATGAAACAAAATT
Locus tag: PROVALCAL_01109
PROVALCAL_01109 -58 4 TATTGTTACATGAAACAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: prpR
Ortholog function: Propionate catabolism operon regulatory protein PrpR
Escherichia coli str. K-12 substr. MG1655 b0330 -107 3.7 ATATGCGTTTCAGTTAACGTTT
Salmonella typhimurium LT2 STM0367 -89 3.5 TTTCATGAAACGAATCACCCTG
Citrobacter koseri ATCC BAA-895 CKO_02831 -179 3.4 AATTTTGTTTTTTCTTATAATT
Photorhabdus luminescens subsp. laumondii TTO1 plu3543 -225 4 ATATATGATTGTTTTTAAATTA
Position: -242
Score: 5.2
Sequence: AAACGTGATTTTTCTCACATAA
Locus tag: PROVALCAL_01110
PROVALCAL_01110 -242 5.2 AAACGTGATTTTTCTCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ycaD
Ortholog function: Hypothetical MFS-type transporter protein ycaD
Escherichia coli str. K-12 substr. MG1655 b0898 -29 4.2 AAATTTGAACTTCCTCACGGTT
Salmonella typhimurium LT2 STM0968 -29 4.2 AAATTTGAACTTCCTCACGGTT
Citrobacter koseri ATCC BAA-895 CKO_02171 -29 4.2 AAATTTGAACTTCCTCACGGTT
Position: -71
Score: 3.8
Sequence: GATTGTGTGAAAATTCACAATA
Locus tag: PROVALCAL_01373
PROVALCAL_01373 -71 3.8 GATTGTGTGAAAATTCACAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ygbJ
Ortholog function: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
Escherichia coli str. K-12 substr. MG1655 b2736 -90 4.9 TTATGTGAATCAGATCACCATA
Salmonella typhimurium LT2 STM2918 -90 4 TTTTGTGAAACAACTCACCGCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01605 -91 5 ATTCGTGATAACTCTCACATAT
Erwinia amylovora ATCC 49946 EAM_1106 -90 4.4 TGATGTGAAGTTTATCACTAAT
Serratia proteamaculans 568 Spro_1492 -92 4.1 AATTGTGACAACGATCGCTGAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4327 -92 4.5 TTATGTGATAAAAATCACCACA
Edwardsiella tarda EIB202 ETAE_1922 -93 3.9 ATTTGTGAGGATAAACACGGTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2507 -147 3.8 ATAAATAATATAAATCAAATAA
-90 3.7 GAATGTGATAACCATCGTGTAT
Position: -146
Score: 5.1
Sequence: ATTTGTGATATATGTCTCATTT
Locus tag: PROVALCAL_01380
PROVALCAL_01380 -146 5.1 ATTTGTGATATATGTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: udp
Ortholog function: Uridine phosphorylase (EC 2.4.2.3)
Escherichia coli str. K-12 substr. MG1655 b3831 -144 5.2 TTATGTGATTTGCATCACTTTT
-92 4.2 CATGGTGATGAGTATCACGAAA
Salmonella typhimurium LT2 STM3968 -144 5.1 TATTGTGATGAACATCACTTTT
-92 4.1 CATAGTGATGGCTGTCACGAAA
Citrobacter koseri ATCC BAA-895 CKO_00173 -143 5.2 TTATGTGATGTAAATCACTATT
-91 3.9 CATGGTGATGAGCGTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04327 -143 5.2 TAATGTGATGTGTATCACTATT
-91 4.1 CTTGGTGACTATCATCACAAAA
Enterobacter sp. 638 Ent638_3962 -143 4.7 TAGTGTGATGCATGTCACTATT
Erwinia amylovora ATCC 49946 EAM_0200 -143 4.6 AATTGCGACTTGTATCACCTTT
-90 4 ATTAAGGATGTTCATCACATAA
Yersinia pestis KIM y0444 -149 5.4 ATGTGTGATTTAAATCACAATT
-97 4 CAAGGTGACATAAATCACGAAA
Serratia proteamaculans 568 Spro_0244 -143 5.3 TTTTGTGACTTTAATCACAAAA
-125 3.7 AAAAGTTATGTAGATTGCATTC
-91 4.1 CATAGTGATGGTTGTCACGAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0185 -197 5.1 AAAAGTGATTTAAGTCACATTT
Edwardsiella tarda EIB202 ETAE_0143 -148 4.7 TATTGTGAAAATAATCACAGTT
Proteus mirabilis HI4320 PMI3532 -145 5.1 ATTTGTGATAACTATCACGTTT
-93 3.6 ACAGGTGACGTCAATCACTAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4417 -271 5.2 TTTTGTGATTTATATCTCAAAA
-219 4 TGAAGTGACATTTATCACTAAA
Position: -268
Score: 3.4
Sequence: TATTTTGTCGTTTTTCAATAAT
Locus tag: PROVALCAL_01567
PROVALCAL_01567 -268 3.4 TATTTTGTCGTTTTTCAATAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ugpB
Ortholog function: Glycerol-3-phosphate ABC transporter, periplasmic glycerol-3-phosphate-binding protein (TC 3.A.1.1.3)
Escherichia coli str. K-12 substr. MG1655 b3453 -182 3.6 ATCCGTGCCCCATCTCCCATTT
Salmonella typhimurium LT2 STM3557 -184 3.5 ATCCGTGCCGTAGCTCCCACTT
Citrobacter koseri ATCC BAA-895 CKO_04874 -185 3.3 TATTTTTCTGTCATTCGCGCAT
-162 3.2 TCATGTTACCTCGCGAGCATAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03813 -88 3.4 TATTTTTCTGTAATTCGAACAT
Enterobacter sp. 638 Ent638_3856 -162 3.5 AGTTATTATTCCCGCCACATTA
-58 3.2 TCATGTTACCTCGCGAGCATAA
Erwinia amylovora ATCC 49946 EAM_3285 -171 3.9 GTGTGTGATGCCGTTAACACAG
Yersinia pestis KIM y0434 -72 3.5 AAAACTGATTTATTTCGCTCAT
-41 4.1 TTTTTTGATGTGAGCCACACAG
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2429 -145 3.5 TATCGCGATACAGTTCATCACT
Edwardsiella tarda EIB202 ETAE_3321 -63 3.4 CAATATGTTGTTTATCACTCAA
Position: -96
Score: 4.5
Sequence: ATTGGTGATTAACATCATATTT
Locus tag: PROVALCAL_01579
PROVALCAL_01579 -96 4.5 ATTGGTGATTAACATCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: scrT
Ortholog function: Sucrose permease, major facilitator superfamily
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03262 -135 4.4 ATTTTTGATCGCGATCGCATCT
-94 5.1 TTTTGTGATTAACATCATATAT
-46 3.6 TTTTGTTAACGTTACCATAATT
Serratia proteamaculans 568 Spro_2083 -139 4.1 TTCGGTGATTTCGATCACACTC
-98 4.7 TTTTGTGATTAACATCGCAATC
Proteus mirabilis HI4320 PMI0850 -223 3.7 AAACGTGAAATATCTAATGAAT
-141 4.4 AATAGCGATCTATCGCACATAA
-100 4.4 TTTAGTGCGTTAAATCACATAA
Position: -79
Score: 3.5
Sequence: ATACGTGCACTTTATAATAAAA
Position: -33
Score: 3.8
Sequence: TTTTTTGAGTTTACTCTTAATT
Locus tag: PROVALCAL_01648
PROVALCAL_01648 -79 3.5 ATACGTGCACTTTATAATAAAA
-33 3.8 TTTTTTGAGTTTACTCTTAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aceB
Ortholog function: malate synthase A
Escherichia coli str. K-12 substr. MG1655 b4014 -117 3.6 AATTGTTTTTGATTTTGCATTT
Salmonella typhimurium LT2 STM4183 -168 3.3 TTAATTTATATTGTTATCAATA
Citrobacter koseri ATCC BAA-895 CKO_03906 -166 3.3 TATTTTTATTGTTATCAATAAG
Yersinia pestis KIM y0015 -254 3.3 ATGAGTTATAGCCATTAAAAAT
Serratia proteamaculans 568 Spro_4503 -228 3.5 TGTTGTTATGTTTATTAACCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3991 -185 3.3 TTTTTTAATTTTAATCTTCATT
Proteus mirabilis HI4320 PMI2764 -68 3.7 ATTTTTGATTTTTGTAAAAACT
Photorhabdus luminescens subsp. laumondii TTO1 plu4396 -65 3.8 GTTTTTGATTTATTTTAAATAT
Position: -84
Score: 5.2
Sequence: TAATGTGATTTTAATCTCATTT
Locus tag: PROVALCAL_01657
PROVALCAL_01657 -84 5.2 TAATGTGATTTTAATCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: nupC
Ortholog function: Nucleoside permease NupC
Proteus mirabilis HI4320 PMI1822 -132 3.9 AAGTGTGATCAACCTATCTTAT
-80 4.4 TATTGTGACAATAATCACATCG
-58 3.8 TAATGTTACGCGTTACATAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu1399 -213 3.8 TAATGTGATATCTATACTCTAT
Position: -307
Score: 4.1
Sequence: TTTTGTGGGTGAGATCATAAAT
Locus tag: PROVALCAL_01662
PROVALCAL_01662 -307 4.1 TTTTGTGGGTGAGATCATAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ptsH
Ortholog function: PTS system phosphocarrier protein
Escherichia coli str. K-12 substr. MG1655 b2415 -209 3.9 TTTTATGATTTGGTTCAATTCT
Salmonella typhimurium LT2 STM2431 -209 4.4 TTTTATGATTTGGTTCAAATCT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02762 -206 4 TTTTATGATTTGGTTCAAGTCT
Enterobacter sp. 638 Ent638_2943 -271 4.4 TTTTGTGGTCCACTTCAAACTT
-144 4 TTTTATGATTTGGTTCAAGTCT
Serratia proteamaculans 568 Spro_3448 -149 3.6 TTTTTTGATCTGAAGTGCCAAA
Proteus mirabilis HI4320 PMI1828 -275 4.4 TTTTGTGGTAGAGATCAAACTT
-115 3.6 TAACGTAACATGGCTTATATTA
Position: -184
Score: 4
Sequence: AATATTGATTTAAATCATAAAG
Position: -132
Score: 4
Sequence: ATAATTGATAAATATCAAAGAA
Locus tag: PROVALCAL_01743
PROVALCAL_01743 -184 4 AATATTGATTTAAATCATAAAG
-132 4 ATAATTGATAAATATCAAAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: grcA
Ortholog function: Autonomous glycyl radical cofactor
Serratia proteamaculans 568 Spro_3682 -140 3.8 AAAATTGACTTTAATCAAAGAA
Position: -156
Score: 4.3
Sequence: AAAATTGATTCAAATCAAAATA
Position: -74
Score: 3.8
Sequence: AGATGTGATCTTGATTTGAATA
Locus tag: PROVALCAL_01779
PROVALCAL_01779 -156 4.3 AAAATTGATTCAAATCAAAATA
-74 3.8 AGATGTGATCTTGATTTGAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ompW
Ortholog function: outer membrane protein W
Escherichia coli str. K-12 substr. MG1655 b1256 -166 4.9 AAAATTGATTTAAATCACATTA
-82 3.8 TAATGTGATCTATGTAGGATCA
Salmonella typhimurium LT2 STM1732 -82 4.2 AAATGTGATCTGTATTAGATCA
Citrobacter koseri ATCC BAA-895 CKO_01333 -82 3.9 TAATGTGATCTGTATTGGATCA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01248 -101 3.9 CATTGCGATCGGTAGCAAAAAT
-45 4 TAGTGTGATCTAAAACAGATCA
Enterobacter sp. 638 Ent638_2283 -121 3.7 AAAATTAATCTGGATCAACAAA
Yersinia pestis KIM y2044 -69 3.9 AGATGTGATCTCGATTAGATCA
Serratia proteamaculans 568 Spro_2674 -135 3.8 TTTTTTGATTCAGATCAATCCT
Edwardsiella tarda EIB202 ETAE_1528 -161 3.9 CTGATTGATGTCTATCAAATTT
Proteus mirabilis HI4320 PMI1350 -168 4.6 AAATTTGATGTGGATCAATTAT
-85 3.8 AGTTGTGATCGGCATTAGATCA
Photorhabdus luminescens subsp. laumondii TTO1 plu2478 -164 4.3 AACTTTGATTTGGATCAAGTTA
-39 3.8 TATTTTGATTGACTTTAAATCA
Position: -267
Score: 5.3
Sequence: TAAAGTGATCTAAATCACAAAA
Locus tag: PROVALCAL_01795
PROVALCAL_01795 -267 5.3 TAAAGTGATCTAAATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychE
Ortholog function: putative channel protein
Escherichia coli str. K-12 substr. MG1655 b1242 -257 5.1 TTACGTGATCCAAATCAAATTT
Salmonella typhimurium LT2 STM1748 -256 4.8 TTGTGTGATCTAAATCAAGATT
Citrobacter koseri ATCC BAA-895 CKO_01319 -167 5 TTGCGTGATCCAGATCAAATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02198 -261 4.8 TTACGTGATTTAGATCAAGTAT
Enterobacter sp. 638 Ent638_2303 -256 4 AAACATGATCTGAATCAATTTA
Erwinia amylovora ATCC 49946 EAM_1899 -158 3.8 AAAGATGATGCAGATCATCAAT
Serratia proteamaculans 568 Spro_2703 -268 5.2 TTTTGTGATTTAAATCATAAAA
Proteus mirabilis HI4320 PMI1485 -290 5.3 TAAAGTGATCTACATCACAATA
Photorhabdus luminescens subsp. laumondii TTO1 plu2495 -295 4.9 TATATTGATCTTAATCACATAA
Position: -174
Score: 5.3
Sequence: TTTTGTGATTTAGATCACTTTA
Locus tag: PROVALCAL_01796
PROVALCAL_01796 -174 5.3 TTTTGTGATTTAGATCACTTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: adhE
Ortholog function: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
Escherichia coli str. K-12 substr. MG1655 b1241 -241 5 AAATTTGATTTGGATCACGTAA
Salmonella typhimurium LT2 STM1749 -242 4.9 AATCTTGATTTAGATCACACAA
Citrobacter koseri ATCC BAA-895 CKO_01318 -242 4.9 AAATTTGATCTGGATCACGCAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02199 -237 4.7 ATACTTGATCTAAATCACGTAA
Enterobacter sp. 638 Ent638_2304 -253 4.1 TAAATTGATTCAGATCATGTTT
Erwinia amylovora ATCC 49946 EAM_1900 -223 3.9 ATTGATGATCTGCATCATCTTT
Yersinia pestis KIM y2023 -286 5.3 TTTTGTGATTTAAATCACGAAA
Serratia proteamaculans 568 Spro_2704 -278 5.1 TTTTATGATTTAAATCACAAAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2326 -315 4.5 AAGTTCGATGTTGATCACAAAA
Edwardsiella tarda EIB202 ETAE_1508 -265 5 TTTCGTGACCTTAATCACAAAA
Proteus mirabilis HI4320 PMI1486 -246 5.4 TATTGTGATGTAGATCACTTTA
-187 3.7 AAAGGAGATCTTTTTAAAATAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2496 -237 3.7 TATTTTTATTAGATTAAAAATT
-138 4.6 TTATGTGATTAAGATCAATATA
Position: -149
Score: 5.1
Sequence: ATATGTGAGACTCATCACAAAT
Locus tag: PROVALCAL_01816
PROVALCAL_01816 -149 5.1 ATATGTGAGACTCATCACAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msrB
Ortholog function: methionine sulfoxide reductase B
Escherichia coli str. K-12 substr. MG1655 b1778 -137 5.2 AAATGTGATTTTCATCACGATT
Salmonella typhimurium LT2 STM1291 -107 4.7 TAATGTGACATCAGTCACGATT
Citrobacter koseri ATCC BAA-895 CKO_01799 -107 4.9 AAACGTGATTCCGATCACGATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01198 -135 5.1 AAACGTGATTTAAGTCACAATT
Enterobacter sp. 638 Ent638_1676 -137 5.2 ATATGTGAGAAAGATCACAATT
Erwinia amylovora ATCC 49946 EAM_1930 -137 5.2 AATGGTGATCTGCATCACAATT
Yersinia pestis KIM y2164 -85 5.1 ATTTGCGATTTTTATCACATTT
Serratia proteamaculans 568 Spro_2727 -143 5.7 ATATGTGATCGGTATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2343 -135 5.6 TTATGTGATACACATCACAATT
Edwardsiella tarda EIB202 ETAE_1484 -91 4.9 GTTTGTGATGCTCATCACAAAA
Proteus mirabilis HI4320 PMI1503 -137 5.3 TTATGTGAAATGTATCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2557 -267 4.6 ATATGCGAGTCACATCACAATA
Position: -229
Score: 5.5
Sequence: ATTTGTGATGAGTCTCACATAT
Locus tag: PROVALCAL_01817
PROVALCAL_01817 -229 5.5 ATTTGTGATGAGTCTCACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gapA
Ortholog function: glyceraldehyde-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b1779 -226 5.3 AATCGTGATGAAAATCACATTT
Salmonella typhimurium LT2 STM1290 -226 4.8 AATCGTGACTGATGTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_01800 -226 5 AATCGTGATCGGAATCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01197 -225 5.2 AATTGTGACTTAAATCACGTTT
Enterobacter sp. 638 Ent638_1675 -225 5.7 AATTGTGATCTTTCTCACATAT
Erwinia amylovora ATCC 49946 EAM_1931 -215 5.4 AATTGTGATGCAGATCACCATT
Yersinia pestis KIM y2165 -218 5.1 AAATGTGATAAAAATCGCAAAT
Serratia proteamaculans 568 Spro_2728 -227 5.6 ATATGTGATACCGATCACATAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2344 -235 5.8 AATTGTGATGTGTATCACATAA
Edwardsiella tarda EIB202 ETAE_1483 -227 5.1 TTTTGTGATGAGCATCACAAAC
Proteus mirabilis HI4320 PMI1504 -226 5.6 AAATGTGATACATTTCACATAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2558 -224 5.4 TATTGTGATGTGACTCGCATAT
Position: -76
Score: 4.7
Sequence: GAGTGTGATATTATTCACAAAA
Locus tag: PROVALCAL_01829
PROVALCAL_01829 -76 4.7 GAGTGTGATATTATTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sotB
Ortholog function: Probable sugar efflux transporter
Escherichia coli str. K-12 substr. MG1655 b1528 -94 4.9 AAACGCGATCCAGATCACAAAT
Salmonella typhimurium LT2 STM1522 -94 4.5 AAATGAGAAGCAGGTCACAAAA
Citrobacter koseri ATCC BAA-895 CKO_01548 -94 4.8 TAATGAGACATACATCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01628 -94 4.8 AAATGAGACGCAGATCACAAAA
Enterobacter sp. 638 Ent638_2000 -95 4.9 TTTTGAGATCTGCGTCACATAA
Position: 23
Score: 3.9
Sequence: AATAATGGTCGATATCACAAAA
Locus tag: PROVALCAL_01856
PROVALCAL_01856 23 3.9 AATAATGGTCGATATCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: manZ
Ortholog function: PTS enzyme IID, mannose-specific
Escherichia coli str. K-12 substr. MG1655 b1819 -60 3.8 TATTGTGTTGATTATCACTCAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02335 -163 3.8 TTAACGGATCTTCATCACATTA
Enterobacter sp. 638 Ent638_2388 -166 3.8 ATTACGGATCTTCATCACATAA
Yersinia pestis KIM y2553 -231 3.9 ATAGATGAGCAATGTCACATAA
Edwardsiella tarda EIB202 ETAE_1557 -267 3.9 ATTAACGATGGGCGTCACATAA
Position: -194
Score: 3.9
Sequence: AAAAATGATATGAATAAAAATA
Position: -42
Score: 3.8
Sequence: TACTGTGAAGGCTCTTACCTTA
Locus tag: PROVALCAL_01928
PROVALCAL_01928 -194 3.9 AAAAATGATATGAATAAAAATA
-42 3.8 TACTGTGAAGGCTCTTACCTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: maeB
Ortholog function: malic enzyme
Escherichia coli str. K-12 substr. MG1655 b2463 -257 3.9 ATGAGTGCGTTAATTCACACTT
Salmonella typhimurium LT2 STM2472 -240 3.8 ATGAGTGTGTTGATTCACACTT
Enterobacter sp. 638 Ent638_2958 -231 4.1 ATACATGACGTACTTAACAAAA
Yersinia pestis KIM y1449 -92 3.7 GATTGTGATAAATCACTCACTA
Serratia proteamaculans 568 Spro_3472 -209 3.6 CTTTGTTATCAAACTCACTATC
-90 4.1 GTTTGTGACGTTTCTCTCACTA
Photorhabdus luminescens subsp. laumondii TTO1 plu2719 -74 4 TGTTATGATTTGACACACAGTA
Position: -231
Score: 3.6
Sequence: TGATTTAATTTAATTAACGTAA
Locus tag: PROVALCAL_01930
PROVALCAL_01930 -231 3.6 TGATTTAATTTAATTAACGTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yffB
Ortholog function: FIG138056: a glutathione-dependent thiol reductase
Escherichia coli str. K-12 substr. MG1655 b2471 -246 3.8 GTATGTGATACACAGCAACATT
Salmonella typhimurium LT2 STM2482 -282 4 TTATGTGACTTACTGCAATATT
Citrobacter koseri ATCC BAA-895 CKO_00317 -276 4 TTATGTGACTTACTGCAATATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02804 -218 4 TAATGTGACGTAGAGCAACCTC
-179 4 TAATGTTAAAGCCCTCACATCA
Enterobacter sp. 638 Ent638_2966 -254 4 TTATGTGACCAATAGCAATATT
-77 3.6 ATATGTTATGTTTTGCCAAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1292 -138 3.7 TTCTGCAACGCAGTTCACAGTA
Position: -229
Score: 5
Sequence: ATCTGTGATTCAAATCACACAA
Locus tag: PROVALCAL_02044
PROVALCAL_02044 -229 5 ATCTGTGATTCAAATCACACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aspA
Ortholog function: aspartate ammonia-lyase
Escherichia coli str. K-12 substr. MG1655 b4139 -206 4.5 AGCGGTGATCTATTTCACAAAT
-156 4.2 TAAAGTGATCCAGATTACGGTA
Salmonella typhimurium LT2 STM4326 -209 4.2 AGCGGTGACCTATTTCACAAAA
-159 4.2 TTAAGTGATCCAGATTACGGTA
Citrobacter koseri ATCC BAA-895 CKO_03696 -54 4.2 AGCGGTGACCTATTTCACAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04529 -204 3.9 AGCGGTGACCCATTTCACAGAT
-154 3.8 ATAAGTGATCAAGCTTACTGAT
Enterobacter sp. 638 Ent638_0326 -205 4.1 AGCGGTGATTCATTTCACAGAT
Erwinia amylovora ATCC 49946 EAM_0416 -228 4.2 CAATGTGACCTGGAACAGATAT
Yersinia pestis KIM y0606 -224 4.6 AAGTGTGAGAGCAATCACAGAT
Serratia proteamaculans 568 Spro_0406 -205 4.7 AAACGTGAATGAGATCACAGAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0621 -272 4 ACTCGTGACTACAATCACAGTT
Edwardsiella tarda EIB202 ETAE_0311 -197 4.4 ATCTGTGAGTATTATCACAGAT
Proteus mirabilis HI4320 PMI2546 -206 4.1 ATCCATGAGATAGATCACAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4137 -274 3.8 AGATATAATTGGGGTCACAGTT
-211 5.6 AATTGTGATAAATATCACATAT
Position: -136
Score: 3.6
Sequence: ATTTGTTATCGGCACCATTTTT
Locus tag: PROVALCAL_02071
PROVALCAL_02071 -136 3.6 ATTTGTTATCGGCACCATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpQ
Ortholog function: glycerophosphoryl diester phosphodiesterase
Escherichia coli str. K-12 substr. MG1655 b2239 -219 3.7 TTGTTTGATTTCGCGCATATTC
-179 3.6 AAACGTGATTTCATGCGTCATT
-129 4.6 ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2 STM2282 -220 3.6 ATGTTTGATTTCGCGCATAATC
-180 4.2 AAACGTGATTTCGTGCGCCTTT
-131 5.2 ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_00538 -221 3.6 TTGTTTGATTTCGCGCATAATC
-181 4 AAACGTGATTTCGTGCGCTTTT
-132 4.8 ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02645 -218 3.8 TTGTTTGATTTCGAGCATATTC
-178 4.6 TTATGTGATTTCGTGCTCACAT
-128 4.5 AATTGTGCGATGTTTCACAGTA
Serratia proteamaculans 568 Spro_0198 -249 4.5 GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4167 -253 3.7 ATGTTTGATAAAGAGCAAAAAC
-193 4.9 AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202 ETAE_3117 -200 3.7 ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320 PMI3590 -291 3.6 ATGTTTGATAATGAGCAAAAAC
-232 5.4 ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4120 -250 4.9 TATTGTGACAATTGTCACAATT
Position: -349
Score: 3.6
Sequence: ATGTTTGATAAGGAACAAAAAC
Position: -289
Score: 4.3
Sequence: AACCGTGACTACCTTCACAAAA
Position: -197
Score: 4.2
Sequence: AATTGTGCGTTAGATTACAGAT
Position: -101
Score: 3.7
Sequence: TTTTGTTACTTCTCCCATAATA
Locus tag: PROVALCAL_02072
PROVALCAL_02072 -349 3.6 ATGTTTGATAAGGAACAAAAAC
-289 4.3 AACCGTGACTACCTTCACAAAA
-197 4.2 AATTGTGCGTTAGATTACAGAT
-101 3.7 TTTTGTTACTTCTCCCATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpT
Ortholog function: glycerol-3-phosphate transporter
Escherichia coli str. K-12 substr. MG1655 b2240 -219 3.7 TTGTTTGATTTCGCGCATATTC
-179 3.6 AAACGTGATTTCATGCGTCATT
-129 4.6 ATGTGTGCGGCAATTCACATTT
Salmonella typhimurium LT2 STM2283 -220 3.6 ATGTTTGATTTCGCGCATAATC
-180 4.2 AAACGTGATTTCGTGCGCCTTT
-131 5.2 ATATGTGCTGTAATTCACATTA
Citrobacter koseri ATCC BAA-895 CKO_00537 -221 3.6 TTGTTTGATTTCGCGCATAATC
-181 4 AAACGTGATTTCGTGCGCTTTT
-132 4.8 ATCTGTGCTGTAATTCACATTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02646 -218 3.8 TTGTTTGATTTCGAGCATATTC
-178 4.6 TTATGTGATTTCGTGCTCACAT
-128 4.5 AATTGTGCGATGTTTCACAGTA
Enterobacter sp. 638 Ent638_2804 -201 3.6 TTGTTTGATTTCGAACATAATC
-161 3.8 AAGCGTGATCTCATGCGCTTAT
-111 4 ATCTGTGCGTTGATTCACAGTA
Erwinia amylovora ATCC 49946 EAM_0195 -240 3.7 AAACGCGATGCGGTTAACGATG
-147 3.7 ATTTGTGCCTCTCTTCACGGTC
Serratia proteamaculans 568 Spro_0199 -249 4.5 GAATGTGATCATAATCACGATT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4166 -253 3.7 ATGTTTGATAAAGAGCAAAAAC
-193 4.9 AAGTGTGATTTGCATCACTAAA
Edwardsiella tarda EIB202 ETAE_3116 -200 3.7 ATATGAGCGATCTCTCACAGTA
Proteus mirabilis HI4320 PMI3591 -291 3.6 ATGTTTGATAATGAGCAAAAAC
-232 5.4 ATATGTGATACTAATCACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu4119 -250 4.9 TATTGTGACAATTGTCACAATT
Position: -268
Score: 4.3
Sequence: ATCTGTAATCTAACGCACAATT
Position: -176
Score: 4.3
Sequence: TTTTGTGAAGGTAGTCACGGTT
Locus tag: PROVALCAL_02073
PROVALCAL_02073 -268 4.3 ATCTGTAATCTAACGCACAATT
-176 4.3 TTTTGTGAAGGTAGTCACGGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpA
Ortholog function: sn-glycerol-3-phosphate dehydrogenase subunit A
Escherichia coli str. K-12 substr. MG1655 b2241 -165 4.6 AAATGTGAATTGCCGCACACAT
Salmonella typhimurium LT2 STM2284 -163 5 TAATGTGAATTACAGCACATAT
Citrobacter koseri ATCC BAA-895 CKO_00536 -163 4.7 TAATGTGAATTACAGCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02647 -165 4.3 TACTGTGAAACATCGCACAATT
-115 3.8 ATGTGAGCACGAAATCACATAA
Enterobacter sp. 638 Ent638_2805 -163 4.1 TACTGTGAATCAACGCACAGAT
Yersinia pestis KIM y0404 -231 3.6 AATTGTTACCTATTTTATGAAA
-155 4.4 ACCTGTGATTTTGATCACAATC
Serratia proteamaculans 568 Spro_0200 -231 3.6 CGCTGTGATGGATGGCGCAATT
-138 4.9 AATCGTGATTATGATCACATTC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4165 -148 5.1 TTTAGTGATGCAAATCACACTT
Edwardsiella tarda EIB202 ETAE_3115 -247 4 TACTGTGAGAGATCGCTCATAT
-142 4.8 TAGAGTGATTTTGATCACATTG
Proteus mirabilis HI4320 PMI3592 -262 3.7 TACTGTGAAGTAATACTCAGTT
-170 5.5 ATTTGTGATTAGTATCACATAT
Position: -229
Score: 3.8
Sequence: AATTGTAACCAATATAACTAAT
Position: -153
Score: 3.6
Sequence: TTAGTCGATCAAGATCTCATTT
Locus tag: PROVALCAL_02337
PROVALCAL_02337 -229 3.8 AATTGTAACCAATATAACTAAT
-153 3.6 TTAGTCGATCAAGATCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ushA
Ortholog function: UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)
Escherichia coli str. K-12 substr. MG1655 b0480 -174 4 ATTTGTGATTATTACCAGACTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00461 -125 3.9 AATTATTATCCAACTAACATAC
-94 3.7 AGGTTTGAAGGAAGTCGCAATT
Enterobacter sp. 638 Ent638_0959 -95 3.9 AGATTTGAGGAAAGTCGCAATT
Serratia proteamaculans 568 Spro_1147 -103 4.6 TAATTTGACGCACATCGCAAAA
Edwardsiella tarda EIB202 ETAE_1034 -139 4.4 TTAGGTGAGTCACGTCACAATA
Proteus mirabilis HI4320 PMI2177 -111 3.7 ATATATAACCTACGTCATAAAA
Position: -119
Score: 4.1
Sequence: AAATGAGATCTTGATCGACTAA
Position: -43
Score: 3.9
Sequence: ATTAGTTATATTGGTTACAATT
Locus tag: PROVALCAL_02338
PROVALCAL_02338 -119 4.1 AAATGAGATCTTGATCGACTAA
-43 3.9 ATTAGTTATATTGGTTACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fsr
Ortholog function: fosmidomycin resistance protein
Escherichia coli str. K-12 substr. MG1655 b0479 -65 3.7 TAGTCTGGTAATAATCACAAAT
Salmonella typhimurium LT2 STM0493 -100 3.8 AATTGAGACTTCCTTCAAACAC
Citrobacter koseri ATCC BAA-895 CKO_02670 -102 3.8 AATTGAGACTTCCTTCAAACAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00460 -197 3.8 AATTGCGACTTCCTTCAAACCT
Enterobacter sp. 638 Ent638_0958 -92 4 AATTGCGACTTTCCTCAAATCT
Serratia proteamaculans 568 Spro_1146 -100 4.7 TTTTGCGATGTGCGTCAAATTA
Position: -140
Score: 5.2
Sequence: TTTTGTGATCGGCATCATATTT
Locus tag: PROVALCAL_02400
PROVALCAL_02400 -140 5.2 TTTTGTGATCGGCATCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhaM
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b4470 -228 4.6 TTTTGTGATCTGCCGCAAATAG
Salmonella typhimurium LT2 STM3238 -230 4.5 TGTTGTGATACGCGTCAAATAG
Citrobacter koseri ATCC BAA-895 CKO_04510 -180 4.7 TGTTGTGATCTGCTTCAAGAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04419 -230 3.6 CGCTGTGAGCAGATTAACAAAA
Position: -120
Score: 4.3
Sequence: TTTCGTGATAGCGCTATCATTT
Locus tag: PROVALCAL_02476
PROVALCAL_02476 -120 4.3 TTTCGTGATAGCGCTATCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_00488
Ortholog function: LacI-family transcriptional regulator
Salmonella typhimurium LT2 STM2345 -192 4 AGCTGCGATCGTTATCACAAAG
-143 4.6 AATTGTGATAGCGCTATCAAAT
Citrobacter koseri ATCC BAA-895 CKO_00488 -192 4.6 ATCTGTGATCATATTCACAAAG
-143 4.5 ATATGTGATAGCGCTATCAAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01748 -155 4.2 AACTGTGATACACCTCCCAAAG
-53 3.6 AGTTATAATGCGATTCGCAGAT
Enterobacter sp. 638 Ent638_2847 -178 4.1 AGCTGCGATCAAGATCACAAAG
-129 4.6 AATTGTGATAGCGCTATCAAAT
Yersinia pestis KIM y1619 -208 5.4 TAATGTGATCTGGATCTCAATT
-158 4.6 ATTTGTGATAGCGCTATCATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3772 -246 4.5 TAATGTGATTAACATCCAAAAA
-196 4 AACTGTGACCGGCTTAGCACAA
Edwardsiella tarda EIB202 ETAE_3025 -210 4.3 TTTCGTGATAGCGCTATCATTT
Proteus mirabilis HI4320 PMI1778 -139 4.2 AATTGTGATAGCGCTATTATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1978 -195 3.8 GCTAGTGATATTAGTCACAAAT
-145 4.7 AATTGTGATAGCGCTATCATTT
Position: -267
Score: 3.3
Sequence: TAAAGTGTCTAGCTTAGCATAT
Position: -159
Score: 3.5
Sequence: AGTTTTGATCTTAATCCTATCA
Position: -39
Score: 3.4
Sequence: TGAGGCGATAAACATCACTATT
Position: -19
Score: 3.6
Sequence: TTTTTTGAGAGGAATAAAAATG
Locus tag: PROVALCAL_02613
PROVALCAL_02613 -267 3.3 TAAAGTGTCTAGCTTAGCATAT
-159 3.5 AGTTTTGATCTTAATCCTATCA
-39 3.4 TGAGGCGATAAACATCACTATT
-19 3.6 TTTTTTGAGAGGAATAAAAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yhfA
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b3356 -187 4.2 TAATGTGACGTCCTTTGCATAC
Salmonella typhimurium LT2 STM3465 -188 3.9 TAATGTGATGTCCTCTGCATAC
Citrobacter koseri ATCC BAA-895 CKO_04775 -187 3.3 GAATGTGATGTCCTCTGCATAC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03742 -188 3.5 TAATGTGAACTCCTCTGCATAC
Serratia proteamaculans 568 Spro_4579 -280 3.3 GGTTTTGAGGCGTGTCATAAAT
Position: -307
Score: 4.1
Sequence: AATAGTGATGTTTATCGCCTCA
Position: -187
Score: 3.2
Sequence: TGATAGGATTAAGATCAAAACT
Position: -150
Score: 3.2
Sequence: TTATATTATACAATTGATATTA
Locus tag: PROVALCAL_02614
PROVALCAL_02614 -307 4.1 AATAGTGATGTTTATCGCCTCA
-187 3.2 TGATAGGATTAAGATCAAAACT
-150 3.2 TTATATTATACAATTGATATTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: crp
Ortholog function: cyclic AMP receptor protein
Escherichia coli str. K-12 substr. MG1655 b3357 -154 3.3 TACATTGATGTACTGCATGTAT
-136 3.3 GTATGCAAAGGACGTCACATTA
Salmonella typhimurium LT2 STM3466 -159 3.1 TACATTGACGTACTGCATGTAT
Citrobacter koseri ATCC BAA-895 CKO_04777 -160 3.1 TACATTGACGTACTGCATGTAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03743 -158 3.3 TACATTGATGTACTGCATGTAT
Enterobacter sp. 638 Ent638_3784 -128 2.9 AAACATTACAGGCTGCAAACAT
Yersinia pestis KIM y3956 -309 3 AATTTAGACTACCCTTTCATTT
Serratia proteamaculans 568 Spro_4580 -121 3.5 ATTTATGACACGCCTCAAAACC
Proteus mirabilis HI4320 PMI2820 -135 3.3 TATTATAATCTATTCCTTATTA
Position: -159
Score: 4
Sequence: TTATGCGAAAGCTTTCTCATTT
Locus tag: PROVALCAL_02619
PROVALCAL_02619 -159 4 TTATGCGAAAGCTTTCTCATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppiA
Ortholog function: Peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Yersinia pestis KIM y3951 -247 4.5 AAATGAGATATTTCTCGCAAAA
-81 3.6 AAATGTGCATTCTGTTACGTAA
Serratia proteamaculans 568 Spro_4589 -181 3.9 ATGCGTGATGCAGTTGGCAAAA
Position: -106
Score: 3.9
Sequence: AAATGTGACGCTCTTAATTTAA
Locus tag: PROVALCAL_02668
PROVALCAL_02668 -106 3.9 AAATGTGACGCTCTTAATTTAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: uraA1
Ortholog function: Xanthine permease
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04013 -143 3.7 TGATGCGATTTAGCATACAAAA
Enterobacter sp. 638 Ent638_0073 -169 3.7 CAAAATGATTCTTCGCACATAT
Yersinia pestis KIM y0107 -60 4 AAATGTGAGTTAGCAAAAAAAT
Edwardsiella tarda EIB202 ETAE_0025 -56 3.7 TTTTGTGGCGCAGATCATTAAA
Proteus mirabilis HI4320 PMI2868 -54 3.7 TTTTGTGGCGCAGATCATTAAA
Position: -70
Score: 3.8
Sequence: AAATTTGATTACAATCAAATGA
Locus tag: PROVALCAL_02733
PROVALCAL_02733 -70 3.8 AAATTTGATTACAATCAAATGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpD
Ortholog function: glycerol-3-phosphate dehydrogenase
Escherichia coli str. K-12 substr. MG1655 b3426 -116 4.4 TAATGTTATACATATCACTCTA
Salmonella typhimurium LT2 STM3526 -116 4.4 TAATGTTATACATATCACTCTA
Citrobacter koseri ATCC BAA-895 CKO_04845 -116 4.5 TAATGTTATATGTATCACTCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03792 -119 3.7 ATATGTTACACCCATCACTTCA
-58 3.7 TATAGTGAGCGATATCGAGCAT
Enterobacter sp. 638 Ent638_3835 -116 4.4 TTATGTTATCTCTATCACTCAA
-55 4 TATTATGAGCGATATCGAACAT
Erwinia amylovora ATCC 49946 EAM_3265 -124 4 AGACGTTATCGGCATCACGCAT
Yersinia pestis KIM y3891 -129 4.4 AAATGTTACCTCCATCACGCAT
Serratia proteamaculans 568 Spro_4642 -129 3.6 AACTGTTACCTCTATCACGCCT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4141 -144 4.3 TAATGTGACAACTATCATCATA
-124 4.4 TATTGTTAGCTTCATCACGCAT
Edwardsiella tarda EIB202 ETAE_3312 -124 4.3 TTGTGTTATCCGCATCGCGTAA
Proteus mirabilis HI4320 PMI2930 -129 4.4 AATTGTTATTTATATCACGCAG
Position: -232
Score: 3.8
Sequence: TTTTGCGAGTGACCTCACAAGT
Position: -81
Score: 3.8
Sequence: ATATGATACATATTTAACATAT
Locus tag: PROVALCAL_02748
PROVALCAL_02748 -232 3.8 TTTTGCGAGTGACCTCACAAGT
-81 3.8 ATATGATACATATTTAACATAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaN
Ortholog function: Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase (EC 1.2.1.3)
Escherichia coli str. K-12 substr. MG1655 b1387 -261 3.6 TTTCGTGAATTAATTAAAAACA
-175 3.7 AACTGTGACGGATTTCGCACCC
-109 3.8 AGTTGCTATACAGATCGCATAG
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01468 -246 3.3 TTATGTGAATCACTTTGTTTAT
-177 4.4 TTTTGTGATAATCTCCGCAAAA
Serratia proteamaculans 568 Spro_3071 -277 3.8 AAATGTGAATCACGTTAACTAA
-206 4 TTTTGCGATGTTACTCACAGGT
Position: -290
Score: 3.8
Sequence: ATATGTTAAATATGTATCATAT
Position: -139
Score: 4.3
Sequence: ACTTGTGAGGTCACTCGCAAAA
Locus tag: PROVALCAL_02749
PROVALCAL_02749 -290 3.8 ATATGTTAAATATGTATCATAT
-139 4.3 ACTTGTGAGGTCACTCGCAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: paaA
Ortholog function: predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation
Escherichia coli str. K-12 substr. MG1655 b1388 -97 4.3 ATTTGTGATTTTACTTAACTAT
-76 3.6 TTGTGTAACTTTCATAAAACAA
-45 3.6 TGTTTTTAATTAATTCACGAAA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01469 -197 3.8 CATTGTGATCGCGATGGCGTTA
-131 3.7 TTTTGCGGAGATTATCACAAAA
Serratia proteamaculans 568 Spro_3072 -134 3.8 ACCTGTGAGTAACATCGCAAAA
-63 3.8 TTAGTTAACGTGATTCACATTT
Position: -99
Score: 4.5
Sequence: TAACGCGATTCATATCACGTTT
Locus tag: PROVALCAL_02855
PROVALCAL_02855 -99 4.5 TAACGCGATTCATATCACGTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mlc
Ortholog function: ROK family transcriptional regulatory protein
Escherichia coli str. K-12 substr. MG1655 b1594 -108 4.1 AAATGTGCTGTTAATCACATGC
Salmonella typhimurium LT2 STM1488 -65 3.8 AGTATTGAAGTGTTTCACCATA
Citrobacter koseri ATCC BAA-895 CKO_01593 -107 3.6 AAaTGTGcagTAaATCACAcgg
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01574 -104 3.8 AAATGTGCGGTAAATCACAAGG
Enterobacter sp. 638 Ent638_1919 -107 3.8 AAATGTGCGGTAAATCACAAGG
Erwinia amylovora ATCC 49946 EAM_1710 -143 4.9 TTATGTGCTGTAAATCACATTC
Yersinia pestis KIM y2110 -146 4.8 TTATGTGCAGCAAATCACATAA
Serratia proteamaculans 568 Spro_2283 -111 4.8 ATTTGTGCAGCAAATCACATAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2258 -226 4.4 ATATGCGCGCTAAATCACATAA
Edwardsiella tarda EIB202 ETAE_1713 -113 4.8 ATTTGTGCACTTAATCACATAA
Proteus mirabilis HI4320 PMI1292 -126 4.7 ATATGTGCTTTCCATCACGATT
Photorhabdus luminescens subsp. laumondii TTO1 plu2226 -119 4.8 TTTCGTGCTGAATATCACATAT
Position: -116
Score: 3.9
Sequence: TTTAGTGATATAGCTCTCAACC
Locus tag: PROVALCAL_02981
PROVALCAL_02981 -116 3.9 TTTAGTGATATAGCTCTCAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fadD
Ortholog function: long-chain-fatty-acid--CoA ligase
Escherichia coli str. K-12 substr. MG1655 b1805 -131 3.7 AATAGTGACGCGCTTCGCAACC
Salmonella typhimurium LT2 STM1818 -131 3.7 AATAGTGACGCGCTTCGCAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02322 -97 3.7 AATAGTGACGCGCTTCGCAACC
Erwinia amylovora ATCC 49946 EAM_1956 -130 3.9 TTTAGTGATGCGCTTCGCAACC
Yersinia pestis KIM y2236 -80 4.1 AATAGTGATGTATATCTCAACC
Serratia proteamaculans 568 Spro_2760 -99 3.9 ATTAGTGACGTACATCGCAACC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2372 -132 3.8 ATTAGTGATCGTTCTCGCAACC
-75 3.7 TAAAATAATGTTAATAACAATA
Proteus mirabilis HI4320 PMI1166 -121 4.4 TTTAGTGATACACTTCGCATCT
Photorhabdus luminescens subsp. laumondii TTO1 plu2134 -288 3.8 AAATGCTATCTTAAGCAAAAAA
-137 4 ATTAGTGATGTGTATCTCAACC
Position: -313
Score: 4.2
Sequence: AAATATGACCCGTATCTAATTT
Position: -181
Score: 4
Sequence: AACTGTGACCCGTGTCATCAAT
Locus tag: PROVALCAL_02996
PROVALCAL_02996 -313 4.2 AAATATGACCCGTATCTAATTT
-181 4 AACTGTGACCCGTGTCATCAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: zwf
Ortholog function: Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49)
Escherichia coli str. K-12 substr. MG1655 b1852 -208 3.9 TAACATGATCAGTGTCAGATTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02367 -225 3.8 TTACATGATCAGGGTCGTATTT
Yersinia pestis KIM y2244 -231 4.1 TAATATGACCTGTGTCTAATTT
Proteus mirabilis HI4320 PMI1157 -225 3.7 AAGTATGACCTGTGTCTAACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2122 -234 4.2 TAATTTAATGTTTTTCATAAAA
Position: -301
Score: 3.8
Sequence: ATTGATGACACGGGTCACAGTT
Position: -169
Score: 4
Sequence: AAATTAGATACGGGTCATATTT
Locus tag: PROVALCAL_02997
PROVALCAL_02997 -301 3.8 ATTGATGACACGGGTCACAGTT
-169 4 AAATTAGATACGGGTCATATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hexR
Ortholog function: Phosphogluconate repressor HexR, RpiR family
Escherichia coli str. K-12 substr. MG1655 b1853 -151 3.9 AAATCTGACACTGATCATGTTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02368 -134 3.6 AAATACGACCCTGATCATGTAA
Yersinia pestis KIM y2245 -152 3.7 AAATTAGACACAGGTCATATTA
Proteus mirabilis HI4320 PMI1156 -58 3.6 AACCGTTATAGATTTCTCCTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2121 -132 3.7 TTTTATGAAAAACATTAAATTA
Position: -120
Score: 4.3
Sequence: ACATGTGAAGCTTATCGCAAAT
Locus tag: PROVALCAL_03060
PROVALCAL_03060 -120 4.3 ACATGTGAAGCTTATCGCAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ychH
Ortholog function: membrane protein
Escherichia coli str. K-12 substr. MG1655 b1205 -105 4.5 AATTGTGATCACGCCCGCACAT
Salmonella typhimurium LT2 STM1782 -105 4.4 ATTTGTGATCGCACCCGCACTT
Citrobacter koseri ATCC BAA-895 CKO_01260 -104 4.1 AATTGTGATCGCCCACGCACTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02241 -100 4.1 TAATGTGATCGTGGACGCACTC
Enterobacter sp. 638 Ent638_2343 -119 3.7 TGTTGTGACGAGAGTCATTAAT
-101 4 TAATGTGATCATTCACGCAACT
Erwinia amylovora ATCC 49946 EAM_1581 -97 3.9 AAATGTGATCGCTGACTCATCA
Yersinia pestis KIM y2296 -145 3.9 AGTTGTGATCGCTACCGCAACA
Serratia proteamaculans 568 Spro_1985 -117 4.2 ATTTGTGATCGCCTACGCAATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2185 -275 3.6 TAGCGTGATTATGAGAACGCTA
-117 3.8 ATCTGTGATCCCTCCCGCAATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2065 -189 4.1 AGTTGTGATCGTGTCCGCAATG
Position: -329
Score: 3.8
Sequence: TTACGTTATGATCTTCGAAAAT
Locus tag: PROVALCAL_03155
PROVALCAL_03155 -329 3.8 TTACGTTATGATCTTCGAAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lpp
Ortholog function: major outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b1677 -56 3.6 TTGTGTAATACTTGTAACGCTA
Salmonella typhimurium LT2 STM1377 -56 3.6 TTGTGTAATACTTGTAACGCTA
Citrobacter koseri ATCC BAA-895 CKO_01710 -56 3.6 TTGTGTAATACTTGTAACGCTA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02134 -56 3.6 TTGTGTAATACTTGTAACGCTA
Enterobacter sp. 638 Ent638_1767 -56 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia amylovora ATCC 49946 EAM_1656 -56 3.6 TTGTGTAATACTTGTAACGCTA
Serratia proteamaculans 568 Spro_2186 -55 3.6 TTGTGTAATACTTGTAACGCTA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1866 -56 3.6 TTGTGTAATACTTGTAACGCTA
Edwardsiella tarda EIB202 ETAE_1852 -55 3.6 TTGTGTAATACTTGTAACGCTA
Proteus mirabilis HI4320 PMI1409 -200 4.4 TTTTGTGAAATAACACGCATTT
Position: -69
Score: 4.6
Sequence: TATTGTGACATTAGTCACTAAT
Locus tag: PROVALCAL_03169
PROVALCAL_03169 -69 4.6 TATTGTGACATTAGTCACTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroH
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Escherichia coli str. K-12 substr. MG1655 b1704 -106 4.3 AGGTGTGACACACCTCGCACTT
-64 4 TATCGTGATGCGCATCACTTCC
Salmonella typhimurium LT2 STM1347 -106 4.3 AGGTGTGACACGCCTCGCACTT
-64 4 TATCGTGATGCCCATCACTTCC
Citrobacter koseri ATCC BAA-895 CKO_01728 -115 4.3 AGGTGTGAAACGCCTCGCATTT
-64 4.3 TATTGTGATGCCCATCACTTCC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02162 -63 4 TATCGTGATGCGCATCACTTCC
Enterobacter sp. 638 Ent638_1743 -126 3.6 AGTTATGATCGCTTTCACTCTC
-62 3.6 TAAGGTGATGCCCATCACTTCC
Yersinia pestis KIM y1928 -64 4.3 TATTGTGATCGCCATCACTTCC
Serratia proteamaculans 568 Spro_2172 -135 3.9 TTTTGTGCTTTTTTTAGCGATT
-64 4.3 TATTGTGATCGCCATCACTTCC
Edwardsiella tarda EIB202 ETAE_1792 -63 4 TATCGTGATCCCCATCACTTCC
Proteus mirabilis HI4320 PMI1423 -55 3.9 TATTGTGATCTTAATCACTGGG
Photorhabdus luminescens subsp. laumondii TTO1 plu2630 -62 3.8 TATTGTAATTTCCATTATCTAT
Position: -151
Score: 4
Sequence: TAGCGTGATATTTGACAAAAAA
Position: -71
Score: 4.4
Sequence: ACATGTGATCCCGTTAACAGAA
Locus tag: PROVALCAL_03203
PROVALCAL_03203 -151 4 TAGCGTGATATTTGACAAAAAA
-71 4.4 ACATGTGATCCCGTTAACAGAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gnd
Ortholog function: hypothetical protein
Enterobacter sp. 638 Ent638_2642 -116 4 CAGTGTGACATAGATCAGCAAA
Yersinia pestis KIM y2629 -78 3.8 AGTTGTGCTATCTATCGCACCA
-76 3.6 TTGTGCTATCTATCGCACCAAT
Serratia proteamaculans 568 Spro_1608 -297 3.7 ATGCTTGAAGTGGCTCTCACTT
-72 4.2 ACATGTGTGCCACATCACAAAA
Proteus mirabilis HI4320 PMI0655 -71 4.7 CTATGTGATCAGGTTAACAAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu1560 -74 4.4 ACATGTGATCACATTAACAAAT
Position: -71
Score: 5
Sequence: ATTTGTGATCTCTGGCACAATT
Locus tag: PROVALCAL_03213
PROVALCAL_03213 -71 5 ATTTGTGATCTCTGGCACAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yohJ
Ortholog function: LrgA family protein
Escherichia coli str. K-12 substr. MG1655 b2141 -68 4.9 TAATGTGATCGGTAGCACGTTT
Salmonella typhimurium LT2 STM2181 -68 4.6 TGATGTGATCGGTAGCACGTTT
Citrobacter koseri ATCC BAA-895 CKO_00648 -68 4.6 TGATGTGATCGGTAGCACGTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02582 -68 5 TGATGTGATCGGTAGCACATTT
Enterobacter sp. 638 Ent638_2744 -68 4.7 TGATGTGATCCGTAGCACGTTT
Yersinia pestis KIM y2654 -32 4.7 TAGTGTGATGGGTAGCACAGAA
Serratia proteamaculans 568 Spro_1570 -62 4.3 ATTTGTGGCGGAGGTCACAGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2828 -69 4.5 ATTCGTGATCTGTGGCACGTAA
Edwardsiella tarda EIB202 ETAE_1164 -68 4.9 TGATGTGATCAGTAGCACATTT
Proteus mirabilis HI4320 PMI0645 -71 5.2 TATTGTGATCCATAGCACACTT
Position: -214
Score: 3.8
Sequence: AAATGTGATCTGGTAGGCAGAT
Locus tag: PROVALCAL_03311
PROVALCAL_03311 -214 3.8 AAATGTGATCTGGTAGGCAGAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: hutU
Ortholog function: urocanate hydratase
Citrobacter koseri ATCC BAA-895 CKO_02357 -123 3.8 AAGCGTGATTGCTGACGCAATA
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00795 -124 4 AAACGTGATTGCTGACGCAATA
Enterobacter sp. 638 Ent638_1263 -120 4 AAGCGTGATAGCTAACGCAATA
Erwinia amylovora ATCC 49946 EAM_1253 -121 3.8 TTTTGTGACAAAGCTGGCACAA
Yersinia pestis KIM y4038 -261 4.9 ATATGTGATTTGGTGCGCAAAT
Serratia proteamaculans 568 Spro_0805 -196 4.8 TATTGTGATTTGACGCGCAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu3193 -203 4.7 ATTTGTGATTATAAACACAAAA
Position: -125
Score: 3.9
Sequence: TATCATGATATCAATCATGAAT
Locus tag: PROVALCAL_03349
PROVALCAL_03349 -125 3.9 TATCATGATATCAATCATGAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ackA
Ortholog function: acetate kinase
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02687 -95 3.8 AGGCATGATGTTAATCATAAAT
Enterobacter sp. 638 Ent638_2840 -96 3.8 TGGCATGATGTTAATCATAAAT
Serratia proteamaculans 568 Spro_3316 -125 3.8 TCACATGATGTTAATCATAAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3039 -95 4.2 AGGTATGATGTTAATCATAAAT
Proteus mirabilis HI4320 PMI1771 -123 3.6 AAGCATGATGCGTATCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu3095 -121 3.6 TAGCATGATGTTAATCATTTAA
Position: -189
Score: 3.7
Sequence: TTGGTTGATTAAAATCATAAAT
Position: -84
Score: 3.6
Sequence: ATTTGTGAAAATGAACTTAAAA
Position: -7
Score: 3.9
Sequence: TTTTGTGATGGTAGTAGGAAAT
Locus tag: PROVALCAL_03350
PROVALCAL_03350 -189 3.7 TTGGTTGATTAAAATCATAAAT
-84 3.6 ATTTGTGAAAATGAACTTAAAA
-7 3.9 TTTTGTGATGGTAGTAGGAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yfbV
Ortholog function: putative cytoplasmic protein
Escherichia coli str. K-12 substr. MG1655 b2295 -263 3.6 ATTTATGATTAACATCATGCAC
-54 4.1 AGTTGTGAATTTGCACAAATTT
Erwinia amylovora ATCC 49946 EAM_2300 -44 4 TTGTGTGTTTTTTTTAAAATTT
Edwardsiella tarda EIB202 ETAE_2396 -34 3.6 TTTTTTAACTCTTATCGAATAA
Proteus mirabilis HI4320 PMI1770 -290 3.7 ATTAATGATACGCATCATGCTT
-260 3.6 AAACTTGATGCTAATTATAGTT
Position: -333
Score: 4.1
Sequence: ATGTATTATTTACATCAAAAAT
Position: -233
Score: 3.6
Sequence: TTATGTGAAATTTATAGATTTT
Position: -128
Score: 4.3
Sequence: TATTGTGATGGAGGCAAAATAT
Position: -76
Score: 4
Sequence: TAAATTAATATAAATCAAATTA
Position: 5
Score: 3.3
Sequence: CTTTATGATTCAACTTGCCATT
Locus tag: PROVALCAL_03386
PROVALCAL_03386 -333 4.1 ATGTATTATTTACATCAAAAAT
-233 3.6 TTATGTGAAATTTATAGATTTT
-128 4.3 TATTGTGATGGAGGCAAAATAT
-76 4 TAAATTAATATAAATCAAATTA
5 3.3 CTTTATGATTCAACTTGCCATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: dcuB
Ortholog function: C4-dicarboxylate transporter DcuB
Escherichia coli str. K-12 substr. MG1655 b4123 -53 3.5 GACTGTGATCTATTCAGCAAAA
Salmonella typhimurium LT2 STM4301 -53 3.5 GGCTGTGATCCATTTATCAAAA
Citrobacter koseri ATCC BAA-895 CKO_03748 -52 3.9 GACTGTGATCTATTTATCAAAA
Enterobacter sp. 638 Ent638_2479 -81 3.3 AAATCTGATCTGGCTCCCAGCC
Serratia proteamaculans 568 Spro_3863 -77 3.6 GTTTGTGATCGCTATCCCTCAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1533 -296 3.5 TATTGCGAGCGAGATCTTTTAT
-247 3.5 TTAATAGATTTAGATCAAGAAA
Edwardsiella tarda EIB202 ETAE_2844 -194 3.6 ATACTTTATTCAGATCAATTTT
Proteus mirabilis HI4320 PMI0389 -138 3.3 AACTATAACAACGATCAAAAAA
Position: -311
Score: 3.9
Sequence: TGCAATGATGTGTGTCACAAAA
Locus tag: PROVALCAL_03506
PROVALCAL_03506 -311 3.9 TGCAATGATGTGTGTCACAAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yejG
Ortholog function: hypothetical protein
Escherichia coli str. K-12 substr. MG1655 b2181 -158 3.7 AAACGTGACCACGCCCGCAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02614 -204 3.8 AAAGTTGTTTTGGATCACAGAA
Erwinia amylovora ATCC 49946 EAM_2233 -177 3.6 AAATGAGCATTACTTCTCAAAA
Yersinia pestis KIM y2914 -238 4.4 AAATGGGATCTGAATCCCAAAT
Serratia proteamaculans 568 Spro_3250 -214 4.2 AAATGCGAGCTGAGTCGCAAAA
-121 4.1 GCTTGTGATGTTTTTTACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2740 -178 4 ATTCGTGATCAGTTTGGCATTA
-101 3.8 TGTTGTTTTTTTGTTCACGAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu2865 -185 4.1 AAATGAGAGATTGATCTCACTT
-183 3.6 ATGAGAGATTGATCTCACTTTT
-141 3.8 TAATGTAATACTATAAACACAA
Position: -320
Score: 3.7
Sequence: AAAATTGACATAAATCAATTTA
Locus tag: PROVALCAL_03535
PROVALCAL_03535 -320 3.7 AAAATTGACATAAATCAATTTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: cydA
Ortholog function: cytochrome d terminal oxidase, polypeptide subunit I
Proteus mirabilis HI4320 PMI0573 -247 3.8 AAATATGCTGTTACTAACCTAA
Position: -250
Score: 4.4
Sequence: AATCGTGATCCTTCTCACTGTT
Locus tag: PROVALCAL_03543
PROVALCAL_03543 -250 4.4 AATCGTGATCCTTCTCACTGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b-556 subunit
Enterobacter sp. 638 Ent638_1222 -295 4.2 TATCGTGACTGTGATCACTGTT
Erwinia amylovora ATCC 49946 EAM_1168 -249 4.4 AAGTGTGATTTTTGTCACTGTT
-190 3.6 TAATGAGATTGTGATCCACTTA
Yersinia pestis KIM y3071 -254 4.5 AATCGTGATCCTAATCACTGTT
Serratia proteamaculans 568 Spro_1263 -253 4.3 ATCCGTGATCTAAATCACTGTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1357 -265 4.7 ATTCGTGATCTAAATCACTGTT
Edwardsiella tarda EIB202 ETAE_2588 -261 3.7 ATGCGTGACCGTTGTCACTGTT
Proteus mirabilis HI4320 PMI0565 -264 4.3 AAAAGTGATCCCTCTCACTGTT
Position: -71
Score: 3.5
Sequence: TAGTATGACCCCGATAGCCAAA
Locus tag: PROVALCAL_03584
PROVALCAL_03584 -71 3.5 TAGTATGACCCCGATAGCCAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argH
Ortholog function: Argininosuccinate lyase (EC 4.3.2.1)
Salmonella typhimurium LT2 STM4123 -44 3.5 AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895 CKO_03034 -110 4 ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638 Ent638_4026 -44 3.8 AAATGTGAATAAAAATACACTA
Erwinia amylovora ATCC 49946 EAM_0140 -121 3.5 AATAGTGAATAAAAATACAATA
Yersinia pestis KIM y0312 -43 3.7 TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568 Spro_4778 -167 4 TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0194 -159 3.5 TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3479 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3240 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4741 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -59
Score: 3.4
Sequence: TTATTTGAATAAAAATACACAT
Locus tag: PROVALCAL_03587
PROVALCAL_03587 -59 3.4 TTATTTGAATAAAAATACACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: argC
Ortholog function: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)
Salmonella typhimurium LT2 STM4121 -44 3.5 AATTATGAATAAAAATACATTA
Citrobacter koseri ATCC BAA-895 CKO_03036 -110 4 ATTTGTGAATAAAAATACATTA
Enterobacter sp. 638 Ent638_4028 -44 3.8 AAATGTGAATAAAAATACACTA
Yersinia pestis KIM y0310 -43 3.7 TTTATTGACATAAATAAAAATA
Serratia proteamaculans 568 Spro_4781 -167 4 TATTGTGAATAAAAATACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0192 -159 3.5 TATTTTGAATAAAAATACAATA
Edwardsiella tarda EIB202 ETAE_3482 -160 3.4 AATTATGAATAAAAATACAATA
Proteus mirabilis HI4320 PMI3237 -57 3.6 TTTTTTGAATAAAAATACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu4744 -59 3.6 TTTTTTGAATAAAAATACATTA
Position: -65
Score: 3.8
Sequence: ATGTGTATTTTTATTCAAATAA
Locus tag: PROVALCAL_03588
PROVALCAL_03588 -65 3.8 ATGTGTATTTTTATTCAAATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: argE
Ortholog function: acetylornithine deacetylase
Escherichia coli str. K-12 substr. MG1655 b3957 -66 3.7 TAGTGTATTTTTATTCATAAAT
Salmonella typhimurium LT2 STM4120 -66 3.9 TAATGTATTTTTATTCATAATT
Citrobacter koseri ATCC BAA-895 CKO_03037 -27 4.3 TAATGTATTTTTATTCACAAAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04246 -27 4 TATTGTATTTTTATTCAAAATA
Enterobacter sp. 638 Ent638_4029 -66 4.2 TAGTGTATTTTTATTCACATTT
Erwinia amylovora ATCC 49946 EAM_0137 -66 3.8 TATTGTATTTTTATTCACTATT
Yersinia pestis KIM y0309 -223 3.6 TATTTTTATTTATGTCAATAAA
Serratia proteamaculans 568 Spro_4782 -71 4.3 TATTGTATTTTTATTCACAATA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0191 -65 4 TATTGTATTTTTATTCAAAATA
Edwardsiella tarda EIB202 ETAE_3483 -65 3.9 TATTGTATTTTTATTCATAATT
Proteus mirabilis HI4320 PMI3236 -65 3.9 TAATGTATTTTTATTCAAAAAA
Photorhabdus luminescens subsp. laumondii TTO1 plu4745 -65 3.9 TAATGTATTTTTATTCAAAAAA
Position: -101
Score: 3.5
Sequence: TTAAATGACTTTATTCTAATTT
Locus tag: PROVALCAL_03590
PROVALCAL_03590 -101 3.5 TTAAATGACTTTATTCTAATTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: gadB
Ortholog function: Glutamate decarboxylase (EC 4.1.1.15)
Escherichia coli str. K-12 substr. MG1655 b1493 -297 3.6 TTTTATAAATGCGTTCAAAATA
-158 3.3 TATTGTATTGTTTTTCAATGAA
-128 3.3 ATTCGCGTAATATCTCACGATA
Edwardsiella tarda EIB202 ETAE_2868 -186 3.7 TAGCGTTATTTTTCTCATCATT
Position: -194
Score: 3.9
Sequence: ATTTGCGAGGCAGCTCTAAAAA
Position: -176
Score: 4.4
Sequence: AAAAATGATGCAAGTCACACTT
Position: -153
Score: 4
Sequence: TTATGTAAACTAGGTAACAGAT
Position: -129
Score: 3.6
Sequence: TATTGTGAAACTCATTAGAATG
Locus tag: PROVALCAL_03603
PROVALCAL_03603 -194 3.9 ATTTGCGAGGCAGCTCTAAAAA
-176 4.4 AAAAATGATGCAAGTCACACTT
-153 4 TTATGTAAACTAGGTAACAGAT
-129 3.6 TATTGTGAAACTCATTAGAATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: cytR
Ortholog function: transcriptional repressor
Escherichia coli str. K-12 substr. MG1655 b3934 -128 3.9 AAATTCAATATTCATCACACTT
Citrobacter koseri ATCC BAA-895 CKO_03060 -129 3.8 AAATTAAATATCCATCACACTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04229 -162 3.6 TCTTGCGAGCCGGATCGAAAAA
-143 3.9 AAATTTAACAAGCATCACGTTT
Yersinia pestis KIM y0297 -177 3.7 TTCTGCGAGCCAGTTCGAAAAA
-135 3.6 TTATGCAAATTAGGTAACAAAT
Edwardsiella tarda EIB202 ETAE_3434 -258 4.2 AAGTGCGATCGGGATCGAAAAA
-175 3.6 ATATGTGATCATATACTCATCG
Proteus mirabilis HI4320 PMI3218 -207 4.3 TTTTGCGAACTACCTCATAAAA
-189 3.9 AAAAACGATTGGTATCACACTT
Photorhabdus luminescens subsp. laumondii TTO1 plu4760 -213 4.2 ATTTGCGAGCCATATCGAATAA
-195 4.6 ATAAATGATTTATATCACACTT
Position: -142
Score: 4.2
Sequence: TTTGGTGATTTGACACACAGTT
Locus tag: PROVALCAL_03610
PROVALCAL_03610 -142 4.2 TTTGGTGATTTGACACACAGTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: facilitator for glycerol uptake
Proteus mirabilis HI4320 PMI3211 -132 4 TTTCATGATGGGACACACAAAA
Position: -326
Score: 3.7
Sequence: TTATTTGATTTATGGCTTAAAA
Position: -252
Score: 5.5
Sequence: TGTTGTGATCTTAATCACATAA
Locus tag: PROVALCAL_03747
PROVALCAL_03747 -326 3.7 TTATTTGATTTATGGCTTAAAA
-252 5.5 TGTTGTGATCTTAATCACATAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: atpI
Ortholog function: ATP synthase subunit I
Escherichia coli str. K-12 substr. MG1655 b3739 -263 4.8 ATATGTGATCTGAAGCACGCTT
Salmonella typhimurium LT2 STM3872 -262 4.6 ATGTGTGATCTGGTGCACGCTT
-211 4.1 TTTTGTACGATCGTTCACACTT
Citrobacter koseri ATCC BAA-895 CKO_00079 -262 4.7 ATATGTGATCCGAAGCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04144 -262 4.7 TTATGTGATCTGATGCACGCTT
Enterobacter sp. 638 Ent638_4125 -261 4.8 TTTTGTGATCTCGTGCACGCTT
Erwinia amylovora ATCC 49946 EAM_3481 -264 4.4 ATTTGTGATCGTGGACACGCTT
Yersinia pestis KIM y4142 -263 5.4 TTATGTGATGTATTTCACGTTT
Serratia proteamaculans 568 Spro_0001 -265 4.4 TATTGTGAGCAACTACACGTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA4519 -254 5 TTATGTGAGTCACATCACAGAT
Edwardsiella tarda EIB202 ETAE_3526 -297 3.7 AATCGTGAAAATATTTAAATTA
Proteus mirabilis HI4320 PMI3057 -259 5 TTGTGTGTTCTAGATCACATTA
Photorhabdus luminescens subsp. laumondii TTO1 plu0047 -265 5.7 TTATGTGATTTAAATCACATTT
Position: -115
Score: 3.7
Sequence: TTTTGCGAGAACGCTCGAAATA
Position: -95
Score: 3.3
Sequence: TAAAATGAGACAGACCACTATT
Position: -31
Score: 3.2
Sequence: TCCTGTGTTTTCGCTAAAAATA
Locus tag: PROVALCAL_03870
PROVALCAL_03870 -115 3.7 TTTTGCGAGAACGCTCGAAATA
-95 3.3 TAAAATGAGACAGACCACTATT
-31 3.2 TCCTGTGTTTTCGCTAAAAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ppdD
Ortholog function: predicted major pilin subunit
Escherichia coli str. K-12 substr. MG1655 b0108 -145 3.2 CTTCGTAACGCCTCGCAAATTT
Citrobacter koseri ATCC BAA-895 CKO_03268 -146 3.4 TTTTTCGAGCGGCCTCGCAAAC
Yersinia pestis KIM y0761 -123 3.8 TTACGTTATTGCAATAACCTAA
Proteus mirabilis HI4320 PMI2049 -146 4.3 TAATGCGAACTTGCTCTCAATA
Position: -336
Score: 3.1
Sequence: AATAAACATATAACTCACAATT
Position: -319
Score: 3.2
Sequence: CAATTTGATTTAAAATTCACTA
Position: -179
Score: 3.2
Sequence: ATTAATGCTTTTTTTAAAAAAA
Position: -138
Score: 3.8
Sequence: TTTTATGATTTAGCTCAAGGTC
Locus tag: PROVALCAL_03873
PROVALCAL_03873 -336 3.1 AATAAACATATAACTCACAATT
-319 3.2 CAATTTGATTTAAAATTCACTA
-179 3.2 ATTAATGCTTTTTTTAAAAAAA
-138 3.8 TTTTATGATTTAGCTCAAGGTC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pdhR
Ortholog function: Transcriptional repressor for pyruvate dehydrogenase complex
Escherichia coli str. K-12 substr. MG1655 b0113 -156 3.7 AAACGTTATATATGTCAAGTTG
-131 3.8 AAATGTGCACAGTTTCATGATT
Salmonella typhimurium LT2 STM0151 -157 3.5 AAACATGATTTCTGTAAAATTG
-120 3.2 TTTACTGATTTCAATCAAAACC
-79 3 CTTATTAAGCTTTCTCACGAAA
-54 3.4 TAATGGGACAGGTTCCAGATAA
Citrobacter koseri ATCC BAA-895 CKO_03260 -180 3.2 ATTTGTGCATAGTTACATCTTT
-157 3.1 AAACGTTATTTCTGTAATCTTG
-148 3.3 TTCTGTAATCTTGTTAAAATGT
-120 3.2 TTTACTGATTTCAATCAAAACC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_00117 -155 3.2 AAATGTTATTTCTGTAAGGTTG
-118 3.2 TTTACTGATTTCAATCAAAACC
Enterobacter sp. 638 Ent638_0659 -120 3.2 TTTACTGATTTCAATCAAAACC
-77 3.1 TATTGTATTTTCTGGCGAAAAT
-68 3 TTTAGCGATACGAATATGAAAT
Erwinia amylovora ATCC 49946 EAM_0746 -198 3.3 TAAAGCGATCGGATTTAACAAT
Yersinia pestis KIM y0766 -151 4.2 AAATGTGCTGGGTTTCATGATT
-139 3.3 TTTCATGATTTCGGTCAAGGTC
-74 3.4 TTTTGAAATTGGTATTACCAAT
Serratia proteamaculans 568 Spro_4012 -132 3.1 AAATGTGCGGGTAACCTGATTT
-56 3.4 TTTTGAAATTGGTATTACCAAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3790 -120 3.7 ATTGGTGATTTAGCTCAAGGTC
-55 3.4 TTTTGAAATTGGTATTACCAAT
Edwardsiella tarda EIB202 ETAE_0658 -143 3.2 TTTCATGATTTACATCAATAGT
Proteus mirabilis HI4320 PMI2047 -218 3.1 TGTTTTTAATCTTTTCTAATAA
-199 4.4 TAATGCGATCTAGTTATCAAAT
-181 4.2 AAATTTGATGAATTTATCAAAT
-158 3 ATTTGTTAAAATTTGCAGGTTT
-138 3.9 TTTTATGATTTCGCTCAACAAC
-95 3.1 CTTTGTTACTTTATTATCCATT
-89 3.1 TACTTTATTATCCATTACATTA
Position: -297
Score: 3.5
Sequence: TTTTGTAAATTATGTCCCCATT
Position: 19
Score: 3.5
Sequence: TAATGTTAACTTCTGAAAAATT
Locus tag: PROVALCAL_03876
PROVALCAL_03876 -297 3.5 TTTTGTAAATTATGTCCCCATT
19 3.5 TAATGTTAACTTCTGAAAAATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: spr
Ortholog function: predicted peptidase, outer membrane lipoprotein
Escherichia coli str. K-12 substr. MG1655 b2175 -130 4.1 TTTTGTGCGTTAGTCCACAGAT
Salmonella typhimurium LT2 STM2214 -128 3.7 ATTTGTGCGTTCCGCCACAGAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02608 -292 3.6 TAGGGTAATCTCGTTCTCGTTT
-234 4.2 AATTGTGCGTGACTGCACAAAT
Enterobacter sp. 638 Ent638_2771 -250 3.6 AATCGCTTTGTCTATCACAATT
Yersinia pestis KIM y2908 -128 3.7 GAATGTGCGTTCATGCACATTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2735 -159 3.9 TAATGTGCATTCTGGCACACTT
Edwardsiella tarda EIB202 ETAE_2298 -131 4.4 AAGTGTGTTCTGCTGCACAATT
Proteus mirabilis HI4320 PMI0831 -129 4.2 TTACGTGCTTTAGAGCACGTTT
Position: -153
Score: 4.1
Sequence: TAAATTGATTTGCATCAACATT
Locus tag: PROVALCAL_03918
PROVALCAL_03918 -153 4.1 TAAATTGATTTGCATCAACATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndh
Ortholog function: NADH dehydrogenase (EC 1.6.99.3)
Escherichia coli str. K-12 substr. MG1655 b1109 -154 3.9 AAACTTGATTAACATCAATTTT
Salmonella typhimurium LT2 STM1211 -154 4.1 AAACTTGATGCACATCAATTTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_01106 -152 4.1 AAACTTGATGCACATCAATTTT
Enterobacter sp. 638 Ent638_1624 -153 4 AAACTTGATTCATATCAATTTT
Erwinia amylovora ATCC 49946 EAM_1473 -55 3.7 TAAGGTTATTTTATTAACCTTT
Yersinia pestis KIM y1777 -152 3.8 AAAGTTGATATATATCAATTTT
Serratia proteamaculans 568 Spro_1926 -153 4.3 AAGTTTGATGTACATCAATTTT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1815 -153 4 TAAATTGATATATATCAATTTT
Edwardsiella tarda EIB202 ETAE_2070 -166 4.3 TTATTTGATTTGAATCAATTTT
Proteus mirabilis HI4320 PMI0875 -157 4.6 TTTTTTGATATAAATCAACTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu2821 -154 3.8 GAATTTGATGTTGTTCAATTTT
Position: -104
Score: 4
Sequence: ATTAGTTATCTTGCTCACTCTT
Position: -50
Score: 4.2
Sequence: TTCTGTGATCTTTCCCATAATA
Locus tag: PROVALCAL_03932
PROVALCAL_03932 -104 4 ATTAGTTATCTTGCTCACTCTT
-50 4.2 TTCTGTGATCTTTCCCATAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: pepT
Ortholog function: peptidase T
Escherichia coli str. K-12 substr. MG1655 b1127 -73 3.6 AAAAGTGACCTGACGCAATATT
Salmonella typhimurium LT2 STM1227 -73 3.6 AAAAGTGACCTGACGCAATATT
Citrobacter koseri ATCC BAA-895 CKO_01926 -73 3.6 AAAAGTGACCTGACGCAATATT
Enterobacter sp. 638 Ent638_1640 -31 3.6 AAAAGTGACCTGACGCAATATT
Yersinia pestis KIM y1791 -27 3.7 ATATTTGATCATGATCACTTCC
Serratia proteamaculans 568 Spro_2009 -188 4.1 CGTCGTGAAGAAGATCACACAT
Position: -67
Score: 4.7
Sequence: AAGTGTGATCTAAATCATTTTT
Locus tag: PROVALCAL_04001
PROVALCAL_04001 -67 4.7 AAGTGTGATCTAAATCATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: raiA
Ortholog function: stationary phase translation inhibitor and ribosome stability factor
Escherichia coli str. K-12 substr. MG1655 b2597 -81 4.8 TTATGAGATTTTCATCACACAT
Citrobacter koseri ATCC BAA-895 CKO_03918 -40 5.2 TAATGTGATTTAAATCACGCTT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02919 -88 5.6 AAATGTGATTTATATCACACAT
Enterobacter sp. 638 Ent638_3076 -81 5.4 ATGTGTGATTTAGATCACACAT
Erwinia amylovora ATCC 49946 EAM_2617 -83 5.2 AAATGTGATTTCAATCACGATT
Serratia proteamaculans 568 Spro_0882 -83 4.8 ATACGTGATTTTCATCACGCAT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA3349 -86 4 AAAAGCGATCAATCTCACGCTT
Edwardsiella tarda EIB202 ETAE_2834 -82 3.8 ATCCGTGATTTTCCTCTCACAC
Proteus mirabilis HI4320 PMI0391 -82 4.6 AAAAGTGATCTTGATCATGTTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1266 -87 5.1 AATAGTGATTTAGATCACCTTT
Position: -78
Score: 3.5
Sequence: ATATGTTATCTCTCACGCACCA
Locus tag: PROVALCAL_04005
PROVALCAL_04005 -78 3.5 ATATGTTATCTCTCACGCACCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: aroF
Ortholog function: phospho-2-dehydro-3-deoxyheptonate aldolase
Salmonella typhimurium LT2 STM2670 -71 3.9 TTTTGTGGTATGGTTTAAACAT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02923 -159 3.8 TATTGTTATACGCATCGCGCCA
Edwardsiella tarda EIB202 ETAE_2837 -117 3.8 ATGTACGATATTGTTTACATAT
Proteus mirabilis HI4320 PMI0387 -214 4.5 TTATTTTATCTTAGTCACATTT
Photorhabdus luminescens subsp. laumondii TTO1 plu1262 -262 3.6 TGTTTTGATATTGATTTTATTT
Position: -262
Score: 4
Sequence: ATTAGTGCCGCAGCTCACAACT
Locus tag: PROVALCAL_04049
PROVALCAL_04049 -262 4 ATTAGTGCCGCAGCTCACAACT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glnH2
Ortholog function: glutamate and aspartate transporter subunit
Yersinia pestis KIM y1189 -268 3.8 TGGTGCGATTCGTGTCTCAAAA
Proteus mirabilis HI4320 PMI0437 -142 4 TATTGAGAGATAGCTCTCGTAT