Propagation of FadR regulog to Providencia alcalifaciens DSM 30120
| Source regulog: | FadR - Enterobacteriales |
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | activator (repressor) |
| Biological process: | Fatty acid degradation |
| Effector: | Palmitoyl-CoA; Oleoyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Propagated regulon: | |
| Target genome | Providencia alcalifaciens DSM 30120 |
| Orthologous TF(s) | PROVALCAL_01824 |
| Regulated genes | 10 |
Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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| Locus tag | Position | Score | Sequence | |
|---|---|---|---|---|
|
Position: -39
Score: 4.4 Sequence: AATAGGTCAGACCTCTT
Locus tag: PROVALCAL_00403
|
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| PROVALCAL_00403 | -39 | 4.4 | AATAGGTCAGACCTCTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadE | ||||
| Ortholog function: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b0221 | -38 | 4.5 | AAGTGGTCAGACCTCCT |
| Salmonella typhimurium LT2 | STM0309 | -39 | 4.5 | AAGTGGTCAGACCTCCT |
| Citrobacter koseri ATCC BAA-895 | CKO_02965 | -39 | 4.5 | AAGTGGTCAGACCTCCT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_00235 | -40 | 4.5 | AAGTGGTCAGACCTCCT |
| Enterobacter sp. 638 | Ent638_0758 | -39 | 4.5 | AAGTGGTCAGACCTCCT |
| Erwinia amylovora ATCC 49946 | EAM_0890 | -38 | 5.1 | AACAGGTCCGACCACTT |
| Yersinia pestis KIM | y0946 | -36 | 4.7 | AACAGGTCAGACCTCCT |
| Serratia proteamaculans 568 | Spro_0949 | -35 | 5.1 | AACAGGTCAGACCTCTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA3474 | -129 | 5.1 | AACAGGTCAGACCTCTT |
| Proteus mirabilis HI4320 | PMI0348 | -44 | 4.6 | AACAGGTCTGACCTCTG |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu1192 | -57 | 4.6 | AACAGGTCCGACCTCTG |
|
Position: -43
Score: 5 Sequence: ATCTGGTCATACCAGAT
Locus tag: PROVALCAL_01395
|
||||
| PROVALCAL_01395 | -43 | 5 | ATCTGGTCATACCAGAT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadB | ||||
| Ortholog function: fatty oxidation complex, alpha subunit FadB | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3846 | -42 | 5.1 | ATCTGGTACGACCAGAT |
| Salmonella typhimurium LT2 | STM3983 | -42 | 5.1 | ATCTGGTACGACCAGAT |
| Citrobacter koseri ATCC BAA-895 | CKO_00188 | -42 | 5.1 | ATCTGGTATGACCAGAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_04340 | -43 | 5.1 | ATCTGGTATGACCAGAT |
| Enterobacter sp. 638 | Ent638_3949 | -43 | 5.1 | ATCTGGTATGACCAGAT |
| Erwinia amylovora ATCC 49946 | EAM_0213 | -44 | 5.1 | ATCTGGTATGACCAGAT |
| Yersinia pestis KIM | y0464 | -43 | 5 | ATCTGGTCATACCAGAT |
| Serratia proteamaculans 568 | Spro_0261 | -41 | 5 | ATCTGGTCATACCAGAT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0208 | -43 | 5 | ATCTGGTCATACCAGAT |
| Proteus mirabilis HI4320 | PMI3550 | -38 | 5.1 | ATCTGGTCATACCAGTT |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4402 | -43 | 5 | ATCTGGTCATACCAGAT |
|
Position: -76
Score: 3.5 Sequence: TGCTGATCCGATGAGTA
Locus tag: PROVALCAL_01640
|
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| PROVALCAL_01640 | -76 | 3.5 | TGCTGATCCGATGAGTA | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: iclR | ||||
| Ortholog function: Acetate operon transcriptional repressor, IclR family | ||||
| Photorhabdus luminescens subsp. laumondii TTO1 | plu4392 | -86 | 3.2 | CACACATCGGATGAGTG |
|
Position: -31
Score: 4.9 Sequence: AACTCATCTGACCTGTT
Locus tag: PROVALCAL_02205
|
||||
| PROVALCAL_02205 | -31 | 4.9 | AACTCATCTGACCTGTT | |
| Supported by regulated orthologs from reference regulons | ||||
| Ortholog gene name: fadH | ||||
| Ortholog function: 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) | ||||
| Escherichia coli str. K-12 substr. MG1655 | b3081 | -46 | 4.9 | AACTCATCCGACCACAT |
| Salmonella typhimurium LT2 | STM3219 | -46 | 4.9 | AACTCATCCGACCACAT |
| Citrobacter koseri ATCC BAA-895 | CKO_04487 | -46 | 4.9 | AACTCATCCGACCACAT |
| Klebsiella pneumoniae subsp. pneumoniae MGH 78578 | KPN_03510 | -44 | 4.9 | AACTCATCCGACCACAT |
| Enterobacter sp. 638 | Ent638_3539 | -44 | 4.9 | AACTCATCCGACCACAT |
| Erwinia amylovora ATCC 49946 | EAM_0507 | -31 | 5 | AACTCATCCGACCACTT |
| Yersinia pestis KIM | y3589 | -57 | 4.9 | ATCTCATCCGACCACTT |
| Serratia proteamaculans 568 | Spro_4309 | -61 | 4.9 | ATCTCATCCGACCACTT |
| Erwinia carotovora subsp. atroseptica SCRI1043 | ECA0655 | -36 | 4.4 | GACTCATCAGACCAGTT |
| Proteus mirabilis HI4320 | PMI3702 | -32 | 4.7 | ATCTCATCTGACCAGTA |
| Photorhabdus luminescens subsp. laumondii TTO1 | plu3990 | -89 | 4.7 | CACTCATCCGACCACTT |
|
Position: -74
Score: 4.4 Sequence: AACTGGTACAATGAGTT
Locus tag: PROVALCAL_02981
|
||||
| PROVALCAL_02981 | -74 | 4.4 | AACTGGTACAATGAGTT | |
| Supported by regulated orthologs from reference regulons | ||||