Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of Fur regulog to Providencia alcalifaciens DSM 30120

Reference regulog properties
Source regulog: Fur - Enterobacteriales
Regulator type: Transcription factor
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Phylum: Proteobacteria/gamma
Propagated regulon:
Target genome Providencia alcalifaciens DSM 30120
Orthologous TF(s) PROVALCAL_00826
Regulated genes 35
Built upon 656 sites [see more]
Predicted regulatory interactions in Providencia alcalifaciens DSM 30120
Locus tag Position Score Sequence
Position: -75
Score: 5
Sequence: ATGATTGATAATCATTATC
Position: -69
Score: 4.6
Sequence: GATAATCATTATCATCTTT
Locus tag: PROVALCAL_00100
PROVALCAL_00100 -75 5 ATGATTGATAATCATTATC
-69 4.6 GATAATCATTATCATCTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yjjZ
Ortholog function: putative membrane protein
Escherichia coli str. K-12 substr. MG1655 b4567 -60 4.4 GCAAATGATAAAAATTATC
-37 5.2 GATATTGGTTATCATTATC
Salmonella typhimurium LT2 STM4552 -37 5.2 GATATTGGTTATCATTATC
-31 4.2 GGTTATCATTATCAATTCC
Citrobacter koseri ATCC BAA-895 CKO_03427 2 4.9 GCTATTGGTTATCATTATC
8 4.1 GGTTATCATTATCGGTATC
Enterobacter sp. 638 Ent638_0529 -37 5.2 GATATTGGTTATCATTATC
-31 4 GGTTATCATTATCATATTG
Erwinia amylovora ATCC 49946 EAM_0565 -70 4.3 CAAAGTGATAATGATTAAC
-64 4.3 GATAATGATTAACATATGC
-47 4.9 GCTATTGGTAATCATTATC
-41 4.8 GGTAATCATTATCATTTAT
Yersinia pestis KIM y3754 -4 4.9 GATATTGGTTATGATTATC
2 5.2 GGTTATGATTATCATTATC
Serratia proteamaculans 568 Spro_0646 -39 4.7 GATATTAGTTCTCATTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0738 -89 5 GATATTAGTTATCATTATC
-83 4.5 AGTTATCATTATCATTTTT
Proteus mirabilis HI4320 PMI2497 -27 5.3 AATAATGAAAATCATTATC
-21 5.2 GAAAATCATTATCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu4253 -92 5.2 GATATTGGTAATCATTATC
-86 4.7 GGTAATCATTATCATTTGT
Position: -116
Score: 4.9
Sequence: CAAAATGATATTCATTATT
Position: -110
Score: 4.9
Sequence: GATATTCATTATTATTAAT
Locus tag: PROVALCAL_00125
PROVALCAL_00125 -116 4.9 CAAAATGATATTCATTATT
-110 4.9 GATATTCATTATTATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: PMI3708
Ortholog function: ECF-family sigma factor
Proteus mirabilis HI4320 PMI3708 -115 4.2 GATATTGCTTATTATTAAT
-75 4.2 AATATTGATTATAAAAATT
Position: -74
Score: 4.8
Sequence: ATTAATAATAATGAATATC
Position: -68
Score: 4.9
Sequence: AATAATGAATATCATTTTG
Locus tag: PROVALCAL_00126
PROVALCAL_00126 -74 4.8 ATTAATAATAATGAATATC
-68 4.9 AATAATGAATATCATTTTG
Supported by regulated orthologs from reference regulons
Ortholog gene name: PMI3709
Ortholog function: TonB-like protein
Proteus mirabilis HI4320 PMI3709 -115 4.3 AATTTTTATAATCAATATT
-75 4.5 ATTAATAATAAGCAATATC
Position: -333
Score: 4.9
Sequence: ACTAATGATAATTACTATC
Locus tag: PROVALCAL_00172
PROVALCAL_00172 -333 4.9 ACTAATGATAATTACTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: exbB
Ortholog function: TonB-dependent siderophore transporter component ExbB
Escherichia coli str. K-12 substr. MG1655 b3006 -82 4.1 AGTAATGAGAACGACTATC
Salmonella typhimurium LT2 STM3159 -82 4.1 AGTAATGAGAACGACTATC
Citrobacter koseri ATCC BAA-895 CKO_04401 -97 4.1 AGTAATGAGAACGACTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03426 -97 4.3 ACTAATGAGAACCACTATC
Enterobacter sp. 638 Ent638_3417 -97 4.3 ACTAATGAGAACCACTATC
Yersinia pestis KIM y3495 -71 4.8 ACTAATGATAATTACTATC
Serratia proteamaculans 568 Spro_4211 -94 4.4 AATAATGAGAACTACTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0358 -206 4.3 AATAATGAGAACGACTATC
Proteus mirabilis HI4320 PMI0029 -170 4.8 AGTAATGATAATTACTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu3941 -98 5.1 AATAATGATAATTACTATC
Position: -124
Score: 4.8
Sequence: GGATATGATAATGATTTTC
Position: -118
Score: 5.5
Sequence: GATAATGATTTTCATTAAC
Locus tag: PROVALCAL_00441
PROVALCAL_00441 -124 4.8 GGATATGATAATGATTTTC
-118 5.5 GATAATGATTTTCATTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: sodA
Ortholog function: manganese/iron superoxide dismutase
Escherichia coli str. K-12 substr. MG1655 b3908 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Salmonella typhimurium LT2 STM4055 -99 4.7 GGCATTGATAATCATTTTC
-93 5 GATAATCATTTTCAATATC
Citrobacter koseri ATCC BAA-895 CKO_03093 -88 4.3 GGCATTGATAAGCATTTTC
-82 4.4 GATAAGCATTTTCAATATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_04217 -88 4.3 GGCATTGATAAGCATTTTC
-82 4 GATAAGCATTTTCAATACC
Enterobacter sp. 638 Ent638_4063 -100 4.7 GGCATTGATAATCATTTTC
-94 5 GATAATCATTTTCAATATC
Yersinia pestis KIM y4080 -104 4.4 AGGTTTGATAATCATTTTC
-98 5 GATAATCATTTTCAATATC
Serratia proteamaculans 568 Spro_0081 -105 4.7 GGCATTGATAATCATTTTC
-99 5 GATAATCATTTTCAATATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA0092 -105 4.9 AATAATCATTTTCAATATC
Proteus mirabilis HI4320 PMI3036 -95 4.6 GGATATGATAATGATTTTC
-89 5.2 GATAATGATTTTCATTAAC
Photorhabdus luminescens subsp. laumondii TTO1 plu0075 -102 4.3 GGTATTGATAAGCATTTCC
Position: -105
Score: 4.2
Sequence: GCAAACTAATATCATTAGC
Locus tag: PROVALCAL_01519
PROVALCAL_01519 -105 4.2 GCAAACTAATATCATTAGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: fatB
Ortholog function: iron ABC transporter, substrate-binding protein
Yersinia pestis KIM y4043 -26 4.8 GGTAATAAAAATCATTAGC
-20 4.2 AAAAATCATTAGCATTACT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2564 -86 4.2 GCGAATGATAATTAAATTC
-80 4.1 GATAATTAAATTCTTTATT
Proteus mirabilis HI4320 PMI2957 -121 4.1 GTGAATTAGTATCATTACT
Position: -203
Score: 3.4
Sequence: TAATATCAAATTCAAACTC
Position: -145
Score: 3.4
Sequence: GCTAATGCGATTGATTCGT
Position: -139
Score: 3.5
Sequence: GCGATTGATTCGTGTTATT
Position: -120
Score: 3.5
Sequence: TTTACTAAAAATCATTGTT
Position: -114
Score: 3.5
Sequence: AAAAATCATTGTTAATCAA
Position: -27
Score: 3.9
Sequence: TAAAATCATCATCATTAAG
Locus tag: PROVALCAL_01847
PROVALCAL_01847 -203 3.4 TAATATCAAATTCAAACTC
-145 3.4 GCTAATGCGATTGATTCGT
-139 3.5 GCGATTGATTCGTGTTATT
-120 3.5 TTTACTAAAAATCATTGTT
-114 3.5 AAAAATCATTGTTAATCAA
-27 3.9 TAAAATCATCATCATTAAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ftnA
Ortholog function: ferritin
Escherichia coli str. K-12 substr. MG1655 b1905 -127 3.4 GgTAATGcgttTtATTccC
-121 3 GcgttTtATtccCATTcgt
Salmonella typhimurium LT2 STM1935 -100 4 AATAATTAAATTTAATATT
Citrobacter koseri ATCC BAA-895 CKO_01042 -97 4.3 AATAATTAAATTTATTATT
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_02402 -161 4 ATAAATTAAAAGCATTCTC
-155 3.8 TAAAAGCATTCTCATTTAT
Enterobacter sp. 638 Ent638_2486 -103 3.7 TATTTTAATAAATAATATC
-97 3.6 AATAAATAATATCTTTATT
Erwinia amylovora ATCC 49946 EAM_2940 -131 4.4 TGGAATGATTATCAATTAC
Yersinia pestis KIM y2524 -93 4.4 AATAATGTGAATGATTATC
-87 4.1 GTGAATGATTATCATGATG
Serratia proteamaculans 568 Spro_1942 -174 4.5 GAAAATAGTTATCATAATT
-168 4 AGTTATCATAATTATTTAA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2473 -158 4.6 TTAAATGATAATGAATATC
-152 4.8 GATAATGAATATCAATAGC
Proteus mirabilis HI4320 PMI1007 -184 4.7 GTTAATGATAATCAATTCC
-178 4.1 GATAATCAATTCCATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2689 -147 4.4 TTAAATGAGATTCATTTTC
-141 4.4 GAGATTCATTTTCATTTTT
Position: -40
Score: 4.9
Sequence: GTTATTAATTATCATTTGC
Locus tag: PROVALCAL_01926
PROVALCAL_01926 -40 4.9 GTTATTAATTATCATTTGC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cjrB
Ortholog function: TonB family protein
Citrobacter koseri ATCC BAA-895 CKO_00040 -104 4.6 GATAATGAGTTTCATTCGC
Serratia proteamaculans 568 Spro_3468 -64 4.9 ACAAATGATTATCATTAGC
Proteus mirabilis HI4320 PMI1550 -75 4.8 GATATTGATAATTATTCTT
-69 4.6 GATAATTATTCTTATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2717 -73 4.7 AAAAATAATTTTCATTAGC
-56 4 GCATATGAAATTAATTATC
-50 4.5 GAAATTAATTATCATTACT
Position: -48
Score: 5.8
Sequence: GAAAATGATTATCATTATC
Locus tag: PROVALCAL_01927
PROVALCAL_01927 -48 5.8 GAAAATGATTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: cjrA
Ortholog function: putative lipoprotein of unknown function DUF399
Citrobacter koseri ATCC BAA-895 CKO_00039 -104 4.6 GATAATGAGTTTCATTCGC
Serratia proteamaculans 568 Spro_3469 -51 5.1 GCAAATGATAATTATTATC
-45 4.2 GATAATTATTATCTATAAT
Proteus mirabilis HI4320 PMI1551 -75 4.8 GATATTGATAATTATTCTT
-69 4.6 GATAATTATTCTTATTAAT
Photorhabdus luminescens subsp. laumondii TTO1 plu2718 -45 4.5 GTAAACGATTCTTATTATC
Position: -56
Score: 4.7
Sequence: ATTAATAGTAATGATTATC
Position: -50
Score: 5.1
Sequence: AGTAATGATTATCATTATG
Locus tag: PROVALCAL_02413
PROVALCAL_02413 -56 4.7 ATTAATAGTAATGATTATC
-50 5.1 AGTAATGATTATCATTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02056
Ortholog function: periplasmic protein involved in Fe2+ uptake
Citrobacter koseri ATCC BAA-895 CKO_02056 -98 5.3 TATAATGATAATAATTATC
-92 5 GATAATAATTATCATTTGT
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1511 -41 4.7 GATAATAAGAATAAATATC
-35 4.2 AAGAATAAATATCATTTGT
Proteus mirabilis HI4320 PMI0176 -41 4.6 AAGAATAATAACAATTATC
-35 4.3 AATAACAATTATCATTCAA
Position: -266
Score: 4.1
Sequence: AATAATGATGTGAATTATC
Position: -198
Score: 4
Sequence: ATAATTGATATTGATAATC
Position: -192
Score: 5.7
Sequence: GATATTGATAATCATTATC
Position: -186
Score: 4.7
Sequence: GATAATCATTATCAATTGA
Locus tag: PROVALCAL_02504
PROVALCAL_02504 -266 4.1 AATAATGATGTGAATTATC
-198 4 ATAATTGATATTGATAATC
-192 5.7 GATATTGATAATCATTATC
-186 4.7 GATAATCATTATCAATTGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sitA
Ortholog function: iron ABC transporter, periplasmic substrate-binding protein
Salmonella typhimurium LT2 STM2861 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_04090 -84 4.5 GTAAATAAGAATTATTTTC
-78 4.2 AAGAATTATTTTCATTTAT
Citrobacter koseri ATCC BAA-895 CKO_00940 -111 4.1 GATAAAGATAATTTTTCTC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03078 -99 4.5 GCAAATAAGAATTATTTTC
-93 4.2 AAGAATTATTTTCATTTAT
Enterobacter sp. 638 Ent638_1111 -98 4.9 TTTAATGATAATTATTTTC
-92 4.5 GATAATTATTTTCATTTAA
Yersinia pestis KIM y1897 -39 5.2 GGTATTGATAATCATTTTC
-33 4.7 GATAATCATTTTCATTTGT
Serratia proteamaculans 568 Spro_2133 -41 5.4 GATATTGATAATCATTTTC
-35 4.6 GATAATCATTTTCATTTGA
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2392 -53 5.1 GATATTGATAATTATTCTC
Proteus mirabilis HI4320 PMI1027 -63 4.2 TGAAATGATATTGATAATC
-57 5.5 GATATTGATAATCATTATC
Photorhabdus luminescens subsp. laumondii TTO1 plu2672 -49 5.2 GATATTGATAATCGTTATC
-43 4.5 GATAATCGTTATCATATAC
Position: -39
Score: 4.6
Sequence: AATAAAGATTTTCATTTTT
Locus tag: PROVALCAL_02723
PROVALCAL_02723 -39 4.6 AATAAAGATTTTCATTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: feoB
Ortholog function: ferrous iron transport protein B
Escherichia coli str. K-12 substr. MG1655 b3409 -138 3.4 GcTgATagaAAcCATTcTC
-132 4.5 AGAAACCATTCTCATTATC
Salmonella typhimurium LT2 STM3506 -140 3.5 GAagATagaAAcCATTcTC
-133 4.5 AGAAACCATTCTCATTATC
Citrobacter koseri ATCC BAA-895 CKO_04831 -139 4.1 GATGATAAAAACCATTCTC
-133 4.7 AAAAACCATTCTCATTATC
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 KPN_03779 -133 4.1 GATGATAAAAACCATTCTC
-127 4.7 AAAAACCATTCTCATTATC
Enterobacter sp. 638 Ent638_3822 -62 4.5 AGAAACCATTCTCATTATC
Yersinia pestis KIM y3911 -118 4.1 GAGCATGAAAATAATTCTC
-112 4.4 GAAAATAATTCTCAGTATT
Serratia proteamaculans 568 Spro_4629 -155 4.3 GAATACGATAATGATTCTC
-149 4.9 GATAATGATTCTCACTATT
Edwardsiella tarda EIB202 ETAE_3284 -163 4.3 GAAAACGATTATCAGTTTT
-157 4.1 GATTATCAGTTTTATTATA
Proteus mirabilis HI4320 PMI2921 -138 4 AAAGATGGTTATAATTCTC
-132 4.3 GGTTATAATTCTCATTTGC
-59 4.8 GTTAATAATTATCAGTATC
-53 4.6 AATTATCAGTATCATTATT
Photorhabdus luminescens subsp. laumondii TTO1 plu0208 -244 4 AATGTTGGTTATTATTCTC
-238 4.2 GGTTATTATTCTCATTTGC
Position: -42
Score: 5.2
Sequence: CATTATGATTATCATTATC
Locus tag: PROVALCAL_02765
PROVALCAL_02765 -42 5.2 CATTATGATTATCATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ireA
Ortholog function: TonB-dependent ferric siderophore receptor
Proteus mirabilis HI4320 PMI1945 -55 4.8 GATAATATTAATCATTCTC
-49 4.3 ATTAATCATTCTCATTACT
Position: -55
Score: 5.4
Sequence: GATAATGATAATAATTAAC
Locus tag: PROVALCAL_03083
PROVALCAL_03083 -55 5.4 GATAATGATAATAATTAAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: viuB
Ortholog function: FAD-binding 9 siderophore-interacting domain protein
Serratia proteamaculans 568 Spro_2919 -65 4.5 GCAAACAATTCTCATTATC
Erwinia carotovora subsp. atroseptica SCRI1043 ECA2023 -72 4.4 CGAAATGATAATAGTTATC
Proteus mirabilis HI4320 PMI1437 -66 4.6 AATAGTGATAATGACTATC
-60 5 GATAATGACTATCATTATT
Photorhabdus luminescens subsp. laumondii TTO1 plu2040 -97 5 TTTAATGATAATAATTATC
-91 5.5 GATAATAATTATCATTTTC
Position: -244
Score: 4.5
Sequence: TTTAATGATAATGGTTATT
Position: -238
Score: 4.7
Sequence: GATAATGGTTATTAGTATC
Position: -232
Score: 4.2
Sequence: GGTTATTAGTATCATTTGT
Locus tag: PROVALCAL_03127
PROVALCAL_03127 -244 4.5 TTTAATGATAATGGTTATT
-238 4.7 GATAATGGTTATTAGTATC
-232 4.2 GGTTATTAGTATCATTTGT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sapA
Ortholog function: ABC peptide transport periplasmic protein
Erwinia amylovora ATCC 49946 EAM_1842 -198 5.1 GTTAATAATAATCATTCTC
-192 5.2 AATAATCATTCTCATTATC
Edwardsiella tarda EIB202 ETAE_1870 -222 4.1 TTGAATGATAATGTTTATC
-216 4.8 GATAATGTTTATCAATATC
Proteus mirabilis HI4320 PMI1378 -131 4.7 GATAATCTTTATCATTAGC
Photorhabdus luminescens subsp. laumondii TTO1 plu2587 -141 4 ACAGATGATAATGGTTATC
-135 4.3 GATAATGGTTATCAATACG
Position: -258
Score: 4.1
Sequence: GCTAATAATTTTATTTATT
Position: -255
Score: 4.2
Sequence: AATAATTTTATTTATTAGC
Position: -133
Score: 4
Sequence: TAAAATAAATACAATTCAC
Locus tag: PROVALCAL_03232
PROVALCAL_03232 -258 4.1 GCTAATAATTTTATTTATT
-255 4.2 AATAATTTTATTTATTAGC
-133 4 TAAAATAAATACAATTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: dps
Ortholog function: DNA protection ferritin-like protein
Salmonella typhimurium LT2 STM0831 -188 4.4 TAAAATGAGAATTATTACC
-136 4 TTTAATCAAAATAAATATT
Citrobacter koseri ATCC BAA-895 CKO_02310 -188 4.5 GTGAATGAGAATTATTAAC
-137 4.3 TTTAATCATTTTCAATATT
Enterobacter sp. 638 Ent638_1299 -118 4.1 TAACATTATTATCACTATT
Position: -349
Score: 5.1
Sequence: CTTAATGATTATTATTATC
Position: -343
Score: 4.2
Sequence: GATTATTATTATCATATAA
Position: -321
Score: 5.1
Sequence: TTAAATGATTATTATTATC
Locus tag: PROVALCAL_03558
PROVALCAL_03558 -349 5.1 CTTAATGATTATTATTATC
-343 4.2 GATTATTATTATCATATAA
-321 5.1 TTAAATGATTATTATTATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02589
Ortholog function: TonB-dependent siderophore receptor
Citrobacter koseri ATCC BAA-895 CKO_02589 -114 4.2 GCAAATGGTAATGATTTGC
-108 4.3 GGTAATGATTTGCAATAAC
Enterobacter sp. 638 Ent638_1079 -109 4.3 GGGAATGATTTGCAATATC
Proteus mirabilis HI4320 PMI0363 -103 4.9 TAGAATAATAATAATTATC
-97 5 AATAATAATTATCATTAGT
Position: -35
Score: 4.3
Sequence: ATTAATAATAACGATTAAT
Locus tag: PROVALCAL_03559
PROVALCAL_03559 -35 4.3 ATTAATAATAACGATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: CKO_02588
Ortholog function: putative enterochelin esterase
Enterobacter sp. 638 Ent638_1080 -59 4.1 GCAAATCATTCCCATTTGC
Proteus mirabilis HI4320 PMI2503 -75 4.2 TGAATTGATAACAATTATC
-69 4.6 GATAACAATTATCATTACT
Photorhabdus luminescens subsp. laumondii TTO1 plu4257 -42 4.1 AATAATAGTAATTGTTCTT
-36 4.1 AGTAATTGTTCTTATTATT
Position: -17
Score: 4.6
Sequence: ATTAACGATAATTATTAAT
Position: 17
Score: 4.2
Sequence: GCAAACGAGATTTATTATC
Position: 23
Score: 4.5
Sequence: GAGATTTATTATCAATATA
Locus tag: PROVALCAL_03778
PROVALCAL_03778 -17 4.6 ATTAACGATAATTATTAAT
17 4.2 GCAAACGAGATTTATTATC
23 4.5 GAGATTTATTATCAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ETAE_2768
Ortholog function: iron(III) ABC transporter, periplasmic binding protein
Erwinia carotovora subsp. atroseptica SCRI1043 ECA1470 -96 3.9 AAGAGTGATTATCATATAT
Edwardsiella tarda EIB202 ETAE_2768 -82 4.5 AAAAGTAATTATCATTTAC
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