Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Lactobacillus plantarum WCFS1

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF AraR Arabinose Arabinose utilization 2 3
TF ArgR Arginine Arginine degradation; Arginine biosynthesis 6 4
TF BirA Biotin Biotin biosynthesis 2 3
TF CcpA HPr, phosphocarrier protein; Fructose-1,6-bisphosphate Carbon catabolism 76 71
TF CcpB unknown 1 1
TF CggR Fructose-1,6-bisphosphate Glycolysis 1 1
TF CopR Copper ion, (Cu2+) Copper homeostasis 2 3
TF CtsR Heat shock Heat shock response 7 5
TF DeoR Deoxyribose-5-phosphate Deoxynucleoside utilization 3 1
TF FlpA Oxygen Heavy metal resistance 4 4
TF FlrR Drug resistance 2 2
TF FruR Fructose-6-phosphate Fructose utilization 1 2
TF GalR Galactose Galactosides utilization; Galactose utilization 4 3
TF GlnR Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 5 4
TF GntR1 Gluconate Gluconate utilization 2 2
TF GutR HPr, phosphocarrier protein; GutB, sorbitol-specific PTS EIIB component Sorbitol utilization 2 2
TF HrcA Heat shock Heat shock response 6 4
TF LacR Lactose Lactose utilization 2 2
TF LexA DNA damage SOS response 10 9
TF Lp_2742 Multidrug efflux; Multidrug resistance 1 1
TF Lp_3221 Sugar utilization 2 2
TF MalR Maltose Maltose utilization; Maltodextrin utilization 3 4
TF MalR3 Maltose Maltose utilization; Maltodextrin utilization 5 6
TF MdxR Maltose Maltose utilization; Maltodextrin utilization 4 2
TF MleR L-malate Malate utilization 3 2
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MtaR Homocysteine Methionine biosynthesis 2 2
TF MtlR HPr, phosphocarrier protein; MtlA, mannitol-specific enzyme IICB PTS component Mannitol utilization 1 1
TF MurR N-acetylmuramate-6-phosphate N-acetylmuramate utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 6 6
TF NiaR Niacin NAD biosynthesis 3 2
TF NihR Nickel homeostasis 5 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 5 10
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 3 1
TF PadR p-Coumaric acid; Ferulic acid Phenolic acid stress response 2 2
TF PerR Iron ion, (Fe2+); Manganese ion, (Mn2+); Hydrogen peroxide Manganese homeostasis; Oxidative stress response; Iron homeostasis 8 7
TF PflR Formate metabolism 3 3
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 7 7
TF RbsR Ribose Ribose utilization 3 2
TF Rex NADH Energy metabolism 6 3
TF ScrR Sucrose-6-phosphate Sucrose utilization 2 4
TF TreR Trehalose-6-phosphate Trehalose utilization 3 1
TF YdfD/YisV Metabolite transport 1 1
TF YhcF Multidrug resistance; Multidrug efflux 2 1
TF YtrA Hypothetical ABC transporter 2 1
TF YwzG Transport 1 1
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 7
RNA FMN Flavin mononucleotide Riboflavin biosynthesis 2 1
RNA L10_leader Ribosome biogenesis 1 1
RNA L13_leader Ribosome biogenesis 1 1
RNA L19_leader Ribosome biogenesis 1 1
RNA L20_leader Ribosome biogenesis 1 1
RNA L21_leader Ribosome biogenesis 1 1
RNA Lysine Lysine Lysine biosynthesis 8 1
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 2 2
RNA Purine Adenine; Guanine Purine metabolism 3 2
RNA PyrR PyrR Pyrimidine metabolism 7 4
RNA SMK_box_riboswitch S-adenosylmethionine Methionine metabolism 1 1
RNA T-box(Ala) Ala-tRNA Amino acid metabolism 1 1
RNA T-box(Arg) Arg-tRNA Amino acid metabolism 1 1
RNA T-box(Asn) Asn-tRNA Amino acid metabolism 2 1
RNA T-box(Asp) Asp-tRNA Amino acid metabolism 1 1
RNA T-box(Gly) Gly-tRNA Amino acid metabolism 1 1
RNA T-box(His) His-tRNA Amino acid metabolism 1 1
RNA T-box(Ile) Ile-tRNA Amino acid metabolism 3 2
RNA T-box(Leu) Leu-tRNA Amino acid metabolism 1 1
RNA T-box(Lys) Lys-tRNA Amino acid metabolism 1 1
RNA T-box(Met) Met-tRNA Amino acid metabolism 10 7
RNA T-box(Phe) Phe-tRNA Amino acid metabolism 1 1
RNA T-box(Ser) Ser-tRNA Amino acid metabolism 2 2
RNA T-box(Thr) Thr-tRNA Amino acid metabolism 1 1
RNA T-box(Trp) Trp-tRNA Amino acid metabolism 3 3
RNA T-box(Tyr) Tyr-tRNA Amino acid metabolism 3 3
RNA T-box(Val) Val-tRNA Amino acid metabolism 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 2 2
RNA glmS Glucosamine-6-phosphate Amino sugar metabolism 1 1
RNA ykoK Magnesium ion, (Mg2+) Magnesium homeostasis 1 1
RNA yybP-ykoY 1 1
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