Regulog SoxR - Pseudomonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	activator (repressor)
Biological process:	Superoxide stress response
Effector:	Paraquat
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Pseudomonadaceae
By trascription factor - SoxR
By TF family - MerR
By effector - Paraquat
By pathway - Superoxide stress response

Statistics of regulated genes
Genome	Genes	Operons
Pseudomonas aeruginosa PAO1	7	4
Pseudomonas entomophila L48	3	3
Pseudomonas putida KT2440	7	5
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas fluorescens Pf-5	2	2
Pseudomonas mendocina ymp	2	2
Pseudomonas stutzeri A1501
Azotobacter vinelandii AvOP

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
PF03992	* Pseudomonas aeruginosa PAO1 Site: position = -67 score = 6.39984 sequence = ACCTCAAGTTTGCTTGAGGT Gene: PA2274: Monooxygenase	* Pseudomonas entomophila L48 Site: position = -71 score = 6.29081 sequence = ACCTTGAGTTAACTGGAGGT Gene: PSEEN3529: Monooxygenase	* Pseudomonas putida KT2440 Site: position = -71 score = 6.14979 sequence = ACCTTGACTTTACTTGAGGT Gene: PP2235: Monooxygenase	Pseudomonas syringae pv. tomato str. DC3000	* Pseudomonas fluorescens Pf-5 Site: position = -78 score = 6.12396 sequence = ACCTTGACTTAACTAGAGGT Gene: PFL_4159: Monooxygenase	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Monooxygenase

CRON 2.
PF01042	Pseudomonas aeruginosa PAO1	* Pseudomonas entomophila L48 Site: position = -59 score = 6.26331 sequence = ACCTCGACTTAACCCGAGGT Gene: PSEEN2338: Endoribonuclease L-PSP	* Pseudomonas putida KT2440 Site: position = -60 score = 6.63583 sequence = ACCTCGAGTTAACTTAAGGT Gene: PP3522: Endoribonuclease L-PSP	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501 Gene: PST_3684: Endoribonuclease L-PSP	Azotobacter vinelandii AvOP	Endoribonuclease L-PSP

CRON 3.
mexG	* Pseudomonas aeruginosa PAO1 Site: position = -125 score = 6.87137 sequence = ACCTCAACTTAACTTGAGGT Gene: PA4205: Membrane protein	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Membrane protein
mexH	Pseudomonas aeruginosa PAO1 Gene: PA4206: RND transporter, membrane fusion protein	Pseudomonas entomophila L48 Gene: PSEEN4758: RND transporter, membrane fusion protein	* Pseudomonas putida KT2440 Site: position = -76 score = 6.23299 sequence = ACCTCAAGTAAAGTTGAGCT Gene: PP2064: RND transporter, membrane fusion protein	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_1029: RND transporter, membrane fusion protein	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	RND transporter, membrane fusion protein
mexI	Pseudomonas aeruginosa PAO1 Gene: PA4207: RND transporter, membrane fusion protein	Pseudomonas entomophila L48 Gene: PSEEN4757: RND transporter, membrane fusion protein	Pseudomonas putida KT2440 Gene: PP2065: RND transporter, membrane fusion protein	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_1028: RND transporter, membrane fusion protein	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	RND transporter, membrane fusion protein
opmD	Pseudomonas aeruginosa PAO1 Gene: PA4208: RND transporter, outer membrane protein	Pseudomonas entomophila L48 Gene: PSEEN4756: RND transporter, outer membrane protein	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	RND transporter, outer membrane protein

CRON 4.
PF07690	* Pseudomonas aeruginosa PAO1 Site: position = -83 score = 6.71903 sequence = ACCTCAAGTTAACTTGAGCT Gene: PA3718: Permease of the major facilitator superfamily	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Permease of the major facilitator superfamily

CRON 5.
PF03358	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	Pseudomonas putida KT2440	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	* Pseudomonas mendocina ymp Site: position = -63 score = 6.61342 sequence = ACCTTAAGTTAAGTTGAGGT Gene: Pmen_1342: NADPH-dependent FMN reductase	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	NADPH-dependent FMN reductase

CRON 6.
PF09933	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48	* Pseudomonas putida KT2440 Site: position = -26 score = 6.32455 sequence = ACCTCGAGTTAAGTCAAGGT Gene: PP2506: Membrane protein	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5 Gene: PFL_0497: Membrane protein	Pseudomonas mendocina ymp	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Membrane protein
PF00106	Pseudomonas aeruginosa PAO1	Pseudomonas entomophila L48 Gene: PSEEN4636: oxidoreductase, short-chain dehydrogenase/reductase family	Pseudomonas putida KT2440 Gene: PP2507: oxidoreductase, short-chain dehydrogenase/reductase family	Pseudomonas syringae pv. tomato str. DC3000	Pseudomonas fluorescens Pf-5	Pseudomonas mendocina ymp Gene: Pmen_1897: oxidoreductase, short-chain dehydrogenase/reductase family	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	oxidoreductase, short-chain dehydrogenase/reductase family

CRON 7.
soxR	* Pseudomonas aeruginosa PAO1 Site: position = -30 score = 6.39984 sequence = ACCTCAAGCAAACTTGAGGT Gene: PA2273: Redox-sensitive transcriptional activator, MerR family	* Pseudomonas entomophila L48 Site: position = -34 score = 6.29081 sequence = ACCTCCAGTTAACTCAAGGT Gene: PSEEN3530: Redox-sensitive transcriptional activator, MerR family	* Pseudomonas putida KT2440 Site: position = -29 score = 6.01523 sequence = AGCTCAACTTAACTTTAGGT Gene: PP2060: Redox-sensitive transcriptional activator, MerR family	Pseudomonas syringae pv. tomato str. DC3000	* Pseudomonas fluorescens Pf-5 Site: position = -50 score = 6.12396 sequence = ACCTCTAGTTAAGTCAAGGT Gene: PFL_4160: Redox-sensitive transcriptional activator, MerR family	* Pseudomonas mendocina ymp Site: position = -35 score = 6.61342 sequence = ACCTCAACTTAACTTAAGGT Gene: Pmen_1341: Redox-sensitive transcriptional activator, MerR family	Pseudomonas stutzeri A1501	Azotobacter vinelandii AvOP	Redox-sensitive transcriptional activator, MerR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SoxR - Pseudomonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --