Regulog Rex - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | Rex |
| Regulation mode: | repressor |
| Biological process: | Energy metabolism |
| Effector: | NADH |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By trascription factor - Rex
- By TF family - Rex
- By effector - NADH
- By pathway - Energy metabolism
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 17 | 7 |
| Clostridium beijerincki NCIMB 8052 | 16 | 11 |
| Clostridium botulinum A str. ATCC 3502 | 15 | 8 |
| Clostridium butyricum 5521 | 20 | 11 |
| Clostridium kluyveri DSM 555 | 7 | 2 |
| Clostridium novyi NT | 22 | 9 |
| Clostridium perfringens ATCC 13124 | 15 | 8 |
| Clostridium tetani E88 | 19 | 11 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| ldh |
*
Clostridium acetobutylicum ATCC 824 Site: position = -98 score = 5.6103 sequence = TAGTTAATAAATTAACAA Gene: CAC0267: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: Cbei_1014: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -161 score = 5.30017 sequence = ATGTTAATTAATTAACTA Gene: CBO1519: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: CBY_2757: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: CKL_1381: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: NT01CX_0236: L-lactate dehydrogenase (EC 1.1.1.27) |
*
Clostridium perfringens ATCC 13124 Site: position = -64 score = 5.06382 sequence = TTGTTATATAATTAACTT Gene: CPF_0098: L-lactate dehydrogenase (EC 1.1.1.27) |
Gene: CTC01998: L-lactate dehydrogenase (EC 1.1.1.27) |
L-lactate dehydrogenase (EC 1.1.1.27) |
| CRON 2. | |||||||||
| narK |
|
|
|
|
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -44 score = 5.38052 sequence = GAGTTAAAAAATTAACAA Gene: CPF_2556: Nitrate/nitrite antiporter |
|
Nitrate/nitrite antiporter |
| CRON 3. | |||||||||
| narA |
|
|
|
*
Clostridium butyricum 5521 Site: position = -169 score = 5.18045 sequence = TTATTAATTTTTTAACAA Site: position = -148 score = 5.12606 sequence = TTGTTAAAAAAAGAACAA Gene: CBY_3325: Nitrate reductase, catalytic subunit |
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -47 score = 5.53884 sequence = ATGATAAATTTTTAACAA Gene: CPF_2052: Nitrate reductase, catalytic subunit |
|
Nitrate reductase, catalytic subunit |
| narB |
|
|
|
Gene: CBY_3326: Nitrate reductase, electron transfer subunit |
|
|
Gene: CPF_2051: Nitrate reductase, electron transfer subunit |
|
Nitrate reductase, electron transfer subunit |
| narD |
|
|
Gene: CBO1333: Nitrate reductase, NAD/FAD binding subunit |
|
|
|
Gene: CPF_2050: Nitrate reductase, NAD/FAD binding subunit |
|
Nitrate reductase, NAD/FAD binding subunit |
| CRON 4. | |||||||||
| adhA |
|
|
*
Clostridium botulinum A str. ATCC 3502 Site: position = -236 score = 5.02761 sequence = TTGTTAAAAAATTATTAA Site: position = -87 score = 5.38312 sequence = TTGTTAAAAAAATAACTA Gene: CBO1438: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent |
|
|
|
|
|
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent |
| CRON 5. | |||||||||
| frdA |
|
|
|
|
|
|
|
*
Clostridium tetani E88 Site: position = -147 score = 5.40479 sequence = TTGACAAAATATTAACAA Gene: CTC01488: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
| CRON 6. | |||||||||
| hyd |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -84 score = 5.55573 sequence = TTGTTATAATTTTAACAA Site: position = -287 score = 5.30057 sequence = ATGTTAATAATTTATCAT Gene: Cbei_0327: Periplasmic [Fe] hydrogenase (EC 1.12.7.2) |
Gene: CBO3302: Periplasmic [Fe] hydrogenase (EC 1.12.7.2) |
Gene: CBY_3049: Periplasmic [Fe] hydrogenase (EC 1.12.7.2) |
|
*
Clostridium novyi NT Site: position = -97 score = 5.34342 sequence = ATGTTACATATTTAACAA Gene: NT01CX_0464: Periplasmic [Fe] hydrogenase (EC 1.12.7.2) |
Gene: CPF_2900: Periplasmic [Fe] hydrogenase (EC 1.12.7.2) |
*
Clostridium tetani E88 Site: position = -84 score = 5.35734 sequence = CTGTTAATAAATTAACAA Gene: CTC02417: Periplasmic [Fe] hydrogenase (EC 1.12.7.2) |
Periplasmic [Fe] hydrogenase (EC 1.12.7.2) |
| CRON 7. | |||||||||
| bdh |
|
*2
Clostridium beijerincki NCIMB 8052 Site: position = -99 score = 5.33365 sequence = TTGATAAAATAATAACAT Gene: Cbei_1722: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase Site: position = -129 score = 5.08963 sequence = TTGATAAAATAATCACAA Gene: Cbei_2181: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -261 score = 4.76223 sequence = TAGTTATTATTTTATCAT Gene: CBO1643: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
*2
Clostridium butyricum 5521 Site: position = -122 score = 4.98062 sequence = ATGATAAAAATATTACAA Gene: CBY_3751: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase Site: position = -92 score = 5.3733 sequence = TTGACAAAAAAATAACAA Gene: CBY_3747: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
Gene: CKL_0543: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
*
Clostridium novyi NT Site: position = -61 score = 5.6879 sequence = TTGTTAATAAAATAACAA Gene: NT01CX_0468: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
Gene: CPF_1465: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
*
Clostridium tetani E88 Site: position = -157 score = 4.8315 sequence = AAGTTAAGTTATTAACAA Site: position = -50 score = 5.41773 sequence = ATGTTAAAAATATATCAA Gene: CTC02422: NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
NADPH-dependent butanol dehydrogenase (EC 1.1.1.-) / Butyraldehyde dehydrogenase |
| CRON 8. | |||||||||
| thlA |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -118 score = 5.43015 sequence = TTGTTTAAATTTTAACAA Site: position = -58 score = 5.74658 sequence = ATGTTAATAATTTAACAA Gene: Cbei_0411: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
*
Clostridium butyricum 5521 Site: position = -81 score = 5.4472 sequence = ATGTTAATAATTTAACGA Site: position = -140 score = 5.28901 sequence = TTGTCTAAAATTTAACAA Gene: CBY_1290: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -35 score = 4.70429 sequence = TTGATAAATTTTTACCTA Site: position = -115 score = 5.56543 sequence = TTGTTTAAAATTTAACAA Gene: CPF_2460: Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| CRON 9. | |||||||||
| ptb |
*
Clostridium acetobutylicum ATCC 824 Site: position = -52 score = 4.80662 sequence = ACGTTAATCATTTAACAT Gene: CAC3076: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -74 score = 5.54971 sequence = TTGATATAAATTTAACAA Gene: Cbei_0203: Phosphate butyryltransferase (EC 2.3.1.19) |
Gene: CBO3427: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Clostridium butyricum 5521 Site: position = -55 score = 5.41442 sequence = TTGATATAATTTTAACAA Gene: CBY_2919: Phosphate butyryltransferase (EC 2.3.1.19) |
|
|
*
Clostridium perfringens ATCC 13124 Site: position = -190 score = 5.23252 sequence = GTGTTTAAAATTTAACAA Site: position = -43 score = 5.69101 sequence = TTGTTATAAATTTAACAA Gene: CPF_2657: Phosphate butyryltransferase (EC 2.3.1.19) |
*
Clostridium tetani E88 Site: position = -48 score = 4.82204 sequence = TAGTTAAAAAGATATCAA Gene: CTC02546: Phosphate butyryltransferase (EC 2.3.1.19) |
Phosphate butyryltransferase (EC 2.3.1.19) |
| buk |
Gene: CAC3075: Butyrate kinase (EC 2.7.2.7) |
Gene: Cbei_0204: Butyrate kinase (EC 2.7.2.7) |
Gene: CBO3426: Butyrate kinase (EC 2.7.2.7) |
Gene: CBY_2920: Butyrate kinase (EC 2.7.2.7) |
|
|
Gene: CPF_2656: Butyrate kinase (EC 2.7.2.7) |
Gene: CTC02545: Butyrate kinase (EC 2.7.2.7) |
Butyrate kinase (EC 2.7.2.7) |
| CRON 10. | |||||||||
| butA |
|
*
Clostridium beijerincki NCIMB 8052 Site: position = -41 score = 5.27385 sequence = ATGTGAATTAATTAACAA Gene: Cbei_1464: 2,3-butanediol dehydrogenase (EC 1.1.1.4) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -51 score = 5.5273 sequence = ATGTTAATTAATTAACAT Gene: CBO2217: 2,3-butanediol dehydrogenase (EC 1.1.1.4) |
*
Clostridium butyricum 5521 Site: position = -41 score = 5.27385 sequence = ATGTGAATTAATTAACAA Gene: CBY_2472: 2,3-butanediol dehydrogenase (EC 1.1.1.4) |
|
Gene: NT01CX_0344: 2,3-butanediol dehydrogenase (EC 1.1.1.4) |
|
|
2,3-butanediol dehydrogenase (EC 1.1.1.4) |
| CRON 11. | |||||||||
| crt |
*
Clostridium acetobutylicum ATCC 824 Site: position = -45 score = 5.55152 sequence = TTGTTATAATATTAACAA Gene: CAC2712: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
*2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_2034: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) Site: position = -87 score = 5.51724 sequence = TTGTTATATTATTAACAA Gene: Cbei_0321: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -136 score = 4.96078 sequence = TAGATAAATTTTTATCAT Site: position = -93 score = 4.81095 sequence = TTGTTAAAATAATAGCTA Gene: CBO3202: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
*
Clostridium butyricum 5521 Site: position = -98 score = 5.55152 sequence = TTGTTATAATATTAACAA Gene: CBY_3041: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
*
Clostridium kluyveri DSM 555 Site: position = -64 score = 5.083 sequence = TTGTGATATTATTAACAA Gene: CKL_0454: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
*
Clostridium novyi NT Site: position = -69 score = 5.24738 sequence = TTGTTACTATATTAACAA Gene: NT01CX_0474: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
*
Clostridium perfringens ATCC 13124 Site: position = -124 score = 5.48579 sequence = TTGTTACAAAATTAACAA Gene: CPF_2585: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
*
Clostridium tetani E88 Site: position = -245 score = 5.02604 sequence = TTGTTATAAATTCAACAA Site: position = -104 score = 5.55152 sequence = TTGTTATAATATTAACAA Gene: CTC02427: 3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
3-hydroxybutyryl-CoA dehydratase (EC 4.2.1.55) |
| hbd |
Gene: CAC2708: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
*2
Clostridium beijerincki NCIMB 8052 Site: position = -146 score = 4.79902 sequence = AAGTTAATAATGTAACAT Site: position = -126 score = 5.32241 sequence = AAGATAATTAATTAACAA Gene: Cbei_0325: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Gene: Cbei_2038: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: CBO3201: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: CBY_3045: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: CKL_0458: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
*2
Clostridium novyi NT Gene: NT01CX_0470: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) Site: position = -233 score = 5.40312 sequence = ATGATATATATTTAACAA Site: position = -46 score = 5.60112 sequence = AAGTTAAAAAATTAACAA Gene: NT01CX_0604: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: CPF_2581: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
Gene: CTC02423: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157) |
| thl |
*2
Clostridium acetobutylicum ATCC 824 Site: position = -161 score = 4.5875 sequence = TTGTGTTTTTTTTAACAA Gene: CAC2873: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) Gene: CAP0078: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
*
Clostridium beijerincki NCIMB 8052 Site: position = -48 score = 5.79103 sequence = TTGTTAAAAAAATAACAA Gene: Cbei_3630: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: CBO3200: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
|
Gene: NT01CX_0603: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
|
*
Clostridium tetani E88 Site: position = -64 score = 5.28141 sequence = TTGTTAATTTTTTAACTA Gene: CTC00312: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| bcd |
Gene: CAC2711: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_2035: Butyryl-CoA dehydrogenase (EC 1.3.99.2) Gene: Cbei_0322: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: CBO3199: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: CBY_3042: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: CKL_0455: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
*2
Clostridium novyi NT Gene: NT01CX_0473: Butyryl-CoA dehydrogenase (EC 1.3.99.2) Site: position = -114 score = 4.68884 sequence = GTGTTTTTTTTTTAACAA Gene: NT01CX_2324: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Gene: CPF_2584: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
*2
Clostridium tetani E88 Gene: CTC02426: Butyryl-CoA dehydrogenase (EC 1.3.99.2) Site: position = -64 score = 5.12554 sequence = AAGTTAGTTATTTAACAA Gene: CTC00710: Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
Butyryl-CoA dehydrogenase (EC 1.3.99.2) |
| etfB |
Gene: CAC2710: Electron transfer flavoprotein, beta subunit |
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_2036: Electron transfer flavoprotein, beta subunit Gene: Cbei_0323: Electron transfer flavoprotein, beta subunit |
Gene: CBO3198: Electron transfer flavoprotein, beta subunit |
Gene: CBY_3043: Electron transfer flavoprotein, beta subunit |
Gene: CKL_0456: Electron transfer flavoprotein, beta subunit |
2
Clostridium novyi NT Gene: NT01CX_0472: Electron transfer flavoprotein, beta subunit Gene: NT01CX_2323: Electron transfer flavoprotein, beta subunit |
Gene: CPF_2583: Electron transfer flavoprotein, beta subunit |
2
Clostridium tetani E88 Gene: CTC02425: Electron transfer flavoprotein, beta subunit Gene: CTC00711: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
Gene: CAC2709: Electron transfer flavoprotein, alpha subunit |
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_2037: Electron transfer flavoprotein, alpha subunit Gene: Cbei_0324: Electron transfer flavoprotein, alpha subunit |
Gene: CBO3197: Electron transfer flavoprotein, alpha subunit |
Gene: CBY_3044: Electron transfer flavoprotein, alpha subunit |
Gene: CKL_0457: Electron transfer flavoprotein, alpha subunit |
2
Clostridium novyi NT Gene: NT01CX_0471: Electron transfer flavoprotein, alpha subunit Gene: NT01CX_2322: Electron transfer flavoprotein, alpha subunit |
Gene: CPF_2582: Electron transfer flavoprotein, alpha subunit |
2
Clostridium tetani E88 Gene: CTC02424: Electron transfer flavoprotein, alpha subunit Gene: CTC00712: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
| CRON 12. | |||||||||
| adhE |
*2
Clostridium acetobutylicum ATCC 824 Gene: CAP0162: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) Site: position = -262 score = 4.91216 sequence = TTGTTAAATGTTTGACAA Gene: CAP0035: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: Cbei_0305: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -178 score = 5.67413 sequence = ATGATAAATATTTAACAA Site: position = -121 score = 5.75676 sequence = TTGTTAAATAAATAACAA Gene: CBO0345: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Clostridium butyricum 5521 Site: position = -104 score = 5.45813 sequence = GTGTTAAAAAAATAACAA Site: position = -146 score = 4.96798 sequence = TTGACAAAAAATAAACAA Gene: CBY_3753: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Gene: CKL_1614: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|
*
Clostridium perfringens ATCC 13124 Site: position = -286 score = 5.22492 sequence = TTGATAAAAAAATCACAA Site: position = -266 score = 5.24729 sequence = TAGTTAAAAAAATAACGA Gene: CPF_2855: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
*
Clostridium tetani E88 Site: position = -139 score = 5.47173 sequence = TTGTTATATAATTAACAT Gene: CTC01366: Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
Alcohol dehydrogenase (EC 1.1.1.1), Fe-dependent; Acetaldehyde dehydrogenase (EC 1.2.1.10) |
| CRON 13. | |||||||||
| COG1115 |
|
|
*
Clostridium botulinum A str. ATCC 3502 Site: position = -144 score = 5.03987 sequence = TTGAGAGAAAATTAACAA Gene: CBO1579: Putative amino-acid transport protein |
|
|
*
Clostridium novyi NT Site: position = -30 score = 5.04408 sequence = TTGAGAGAAATTTAACAA Gene: NT01CX_0309: Putative amino-acid transport protein |
|
|
Putative amino-acid transport protein |
| noxE |
|
Gene: Cbei_3000: NADH oxidase (EC 1.6.99.3) |
Gene: CBO1580: NADH oxidase (EC 1.6.99.3) |
Gene: CBY_1874: NADH oxidase (EC 1.6.99.3) |
|
Gene: NT01CX_0308: NADH oxidase (EC 1.6.99.3) |
*
Clostridium perfringens ATCC 13124 Site: position = -60 score = 5.57634 sequence = TAGATAAAAATTTAACAA Gene: CPF_0728: NADH oxidase (EC 1.6.99.3) |
*
Clostridium tetani E88 Site: position = -141 score = 5.04408 sequence = TTGAAAGAAATTTAACAA Gene: CTC01178: NADH oxidase (EC 1.6.99.3) |
NADH oxidase (EC 1.6.99.3) |
| PF04143 |
|
|
Gene: CBO1581: Protein of unknown function DUF395, YeeE/YedE |
|
|
Gene: NT01CX_0307: Protein of unknown function DUF395, YeeE/YedE |
|
*2
Clostridium tetani E88 Gene: CTC01179: Protein of unknown function DUF395, YeeE/YedE Site: position = -39 score = 5.16341 sequence = TTGACAGATAATTAACAA Gene: CTC00400: Protein of unknown function DUF395, YeeE/YedE |
Protein of unknown function DUF395, YeeE/YedE |
| CRON 14. | |||||||||
| pflB |
Gene: CAC0980: Pyruvate formate-lyase (EC 2.3.1.54) |
*2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_1011: Pyruvate formate-lyase (EC 2.3.1.54) Site: position = -52 score = 5.41991 sequence = TTGATTAAAAATTAACAA Gene: Cbei_1009: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: CBO3216: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: CBY_0465: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: CKL_1107: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: NT01CX_0015: Pyruvate formate-lyase (EC 2.3.1.54) |
Gene: CPF_1356: Pyruvate formate-lyase (EC 2.3.1.54) |
|
Pyruvate formate-lyase (EC 2.3.1.54) |
| CRON 15. | |||||||||
| pflD |
|
|
|
Gene: CBY_1978: Pyruvate formate-lyase (EC 2.3.1.54) |
|
*
Clostridium novyi NT Site: position = -198 score = 5.35706 sequence = TAGATAAATAATTAACAT Gene: NT01CX_0385: Pyruvate formate-lyase (EC 2.3.1.54) |
|
Gene: CTC00936: Pyruvate formate-lyase (EC 2.3.1.54) |
Pyruvate formate-lyase (EC 2.3.1.54) |
| pflC |
|
|
|
Gene: CBY_1977: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
|
Gene: NT01CX_0384: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
|
Gene: CTC00937: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) |
| CRON 16. | |||||||||
| etfB |
Gene: CAC2544: Electron transfer flavoprotein, beta subunit |
Gene: Cbei_0310: Electron transfer flavoprotein, beta subunit |
|
*
Clostridium butyricum 5521 Site: position = -198 score = 5.2937 sequence = CTGTTAAAAAAATAACAA Gene: CBY_3016: Electron transfer flavoprotein, beta subunit |
|
*
Clostridium novyi NT Site: position = -70 score = 5.18543 sequence = TTGAAAAATATATAACAA Gene: NT01CX_1610: Electron transfer flavoprotein, beta subunit |
Gene: CPF_0308: Electron transfer flavoprotein, beta subunit |
Gene: CTC00973: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
Gene: CAC2543: Electron transfer flavoprotein, alpha subunit |
Gene: Cbei_0311: Electron transfer flavoprotein, alpha subunit |
|
Gene: CBY_3017: Electron transfer flavoprotein, alpha subunit |
|
Gene: NT01CX_1611: Electron transfer flavoprotein, alpha subunit |
Gene: CPF_0309: Electron transfer flavoprotein, alpha subunit |
Gene: CTC00974: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
| glcD |
Gene: CAC2542: Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing |
Gene: Cbei_0312: Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing |
|
Gene: CBY_3018: Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing |
|
Gene: NT01CX_1612: Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing |
Gene: CPF_0310: Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing |
Gene: CTC00976: Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing |
Glycolate oxidase (EC 1.1.99.14), FAD/FMN-containing |
| CRON 17. | |||||||||
| nadA |
*
Clostridium acetobutylicum ATCC 824 Site: position = -110 score = 5.26404 sequence = TTGATAAATATCTAACAA Gene: CAC1025: Quinolinate synthetase (EC 4.1.99.-) |
Gene: Cbei_0792: Quinolinate synthetase (EC 4.1.99.-) |
Gene: CBO1448: Quinolinate synthetase (EC 4.1.99.-) |
Gene: CBY_3922: Quinolinate synthetase (EC 4.1.99.-) |
Gene: CKL_0748: Quinolinate synthetase (EC 4.1.99.-) |
Gene: NT01CX_0090: Quinolinate synthetase (EC 4.1.99.-) |
Gene: CPF_0382: Quinolinate synthetase (EC 4.1.99.-) |
|
Quinolinate synthetase (EC 4.1.99.-) |
| nadB |
Gene: CAC1024: L-aspartate oxidase (EC 1.4.3.16) |
Gene: Cbei_0793: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CBO1447A: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CBY_3921: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CKL_0749: L-aspartate oxidase (EC 1.4.3.16) |
Gene: NT01CX_0089: L-aspartate oxidase (EC 1.4.3.16) |
Gene: CPF_0383: L-aspartate oxidase (EC 1.4.3.16) |
|
L-aspartate oxidase (EC 1.4.3.16) |
| nadC |
Gene: CAC1023: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: Cbei_0794: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CBO1447: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CBY_3920: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CKL_0750: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: NT01CX_0088: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
Gene: CPF_0384: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
|
Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) |
| CRON 18. | |||||||||
| frdA |
|
|
|
|
|
|
|
*
Clostridium tetani E88 Site: position = -40 score = 5.47923 sequence = TAGTTAATATTTTAACAA Gene: CTC01847: Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
Fumarate reductase flavoprotein subunit (EC 1.3.99.1) |
| CRON 19. | |||||||||
| asrT |
*
Clostridium acetobutylicum ATCC 824 Site: position = -42 score = 5.52146 sequence = TTGTTATATTTTTAACAA Gene: CAC1512: Predicted sulfite transporter |
Gene: Cbei_0782: Predicted sulfite transporter |
Gene: CBO0956: Predicted sulfite transporter |
|
|
|
Gene: CPF_1695: Predicted sulfite transporter |
Gene: CTC02487: Predicted sulfite transporter |
Predicted sulfite transporter |
| asrA |
Gene: CAC1513: Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
Gene: Cbei_0783: Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
Gene: CBO0957: Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
Gene: CBY_3322: Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
|
Gene: NT01CX_0257: Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
Gene: CPF_1693: Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
Gene: CTC02486: Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
Anaerobic sulfite reductase, subunit A (EC 1.8.1.-) |
| asrB |
Gene: CAC1514: Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
Gene: Cbei_0784: Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
Gene: CBO0958: Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
Gene: CBY_3323: Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
|
Gene: NT01CX_0256: Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
Gene: CPF_1692: Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
Gene: CTC02485: Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
Anaerobic sulfite reductase, subunit B (EC 1.8.1.-) |
| asrC |
Gene: CAC1515: Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
Gene: Cbei_0785: Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
Gene: CBO0959: Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
Gene: CBY_3324: Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
|
Gene: NT01CX_0255: Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
Gene: CPF_1691: Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
Gene: CTC02484: Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
Anaerobic sulfite reductase, subunit C (EC 1.8.1.-) |
| CRON 20. | |||||||||
| maeB |
|
Gene: Cbei_4008: NAD-dependent malic enzyme (EC 1.1.1.38) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -145 score = 5.69212 sequence = TTGTTAATAATATAACAA Gene: CBO0246: NAD-dependent malic enzyme (EC 1.1.1.38) |
*
Clostridium butyricum 5521 Site: position = -145 score = 5.43541 sequence = TTGTTAAAAAAGTAACAA Gene: CBY_2357: NAD-dependent malic enzyme (EC 1.1.1.38) |
|
|
|
|
NAD-dependent malic enzyme (EC 1.1.1.38) |
| CRON 21. | |||||||||
| ctfA |
|
Gene: Cbei_2654: Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) |
Gene: CBO2847: Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) |
|
|
*
Clostridium novyi NT Site: position = -90 score = 5.43198 sequence = ATGACAAAAATTTAACAA Gene: NT01CX_0278: Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) |
|
|
Butyrate-acetoacetate CoA-transferase subunit A (EC 2.8.3.9) |
| ctfB |
|
Gene: Cbei_2653: Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) |
Gene: CBO2848: Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) |
|
|
Gene: NT01CX_0277: Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) |
|
|
Butyrate-acetoacetate CoA-transferase subunit B (EC 2.8.3.9) |
| CRON 22. | |||||||||
| nadO |
|
|
|
|
*
Clostridium kluyveri DSM 555 Site: position = -75 score = 4.71314 sequence = TTGTTTTAATTTTATCAT Site: position = -46 score = 5.41616 sequence = TTGTCAAAAAATTATCAA Gene: CKL_0591: NADH oxidase |
|
|
|
NADH oxidase |
| PF07690 |
|
|
|
|
Gene: CKL_0592: Predicted transporter protein |
|
|
|
Predicted transporter protein |
| CRON 23. | |||||||||
| fld |
Gene: CAC2452: Flavodoxin |
*
Clostridium beijerincki NCIMB 8052 Site: position = -37 score = 5.46793 sequence = AAGTTAATTATTTAACAA Gene: Cbei_4319: Flavodoxin |
|
*
Clostridium butyricum 5521 Site: position = -37 score = 5.46793 sequence = AAGTTAATTATTTAACAA Gene: CBY_3643: Flavodoxin |
|
|
Gene: CPF_2319: Flavodoxin |
Gene: CTC01742: Flavodoxin |
Flavodoxin |
| por |
Gene: CAC2229: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
2
Clostridium beijerincki NCIMB 8052 Gene: Cbei_1853: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) Gene: Cbei_4318: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: CBO2760: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
3
Clostridium butyricum 5521 Gene: CBY_1889: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) Gene: CBY_3642: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) Gene: CBY_0233: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: CKL_2138: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: NT01CX_1854: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: CPF_2318: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Gene: CTC01741: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |