Regulog FadP - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | |
| Biological process: | Fatty acid degradation |
| Effector: | |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - FadP
- By taxonomy - Comamonadaceae
- By TF family - TetR
- By pathway - Fatty acid degradation
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | 12 | 5 |
| Acidovorax sp. JS42 | 16 | 5 |
| Comamonas testosteroni KF-1 | 12 | 3 |
| Delftia acidovorans SPH-1 | 17 | 4 |
| Polaromonas naphthalenivorans CJ2 | 13 | 4 |
| Polaromonas sp. JS666 | 15 | 4 |
| Rhodoferax ferrireducens DSM 15236 | 16 | 6 |
| Variovorax paradoxus S110 | 19 | 4 |
| Verminephrobacter eiseniae EF01-2 | 8 | 4 |
| Methylibium petroleiphilum PM1 | 15 | 4 |
| Leptothrix cholodnii SP-6 | 10 | 3 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| acdQ |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -66 score = 5.30615 sequence = AAGCACGACCGTGCTA Gene: Aave_3439: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
*
Acidovorax sp. JS42 Site: position = -43 score = 4.73833 sequence = AAGCACGCCCGTGCTA Gene: Ajs_3393: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Gene: CtesDRAFT_4861: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Gene: Daci_5374: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Gene: Pnap_3224: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Gene: Bpro_3845: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -144 score = 5.52142 sequence = TCGCACGATCGTGCTA Gene: Rfer_1646: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
*
Variovorax paradoxus S110 Site: position = -87 score = 5.24981 sequence = CAGCACGACCGTGCTA Gene: Vapar_1274: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -49 score = 5.31976 sequence = ACGAACGATCGTGCTA Gene: Veis_2104: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
|
Gene: Lcho_1240: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13) |
| acdP |
Gene: Aave_3440: Acyl-CoA dehydrogenase family protein |
Gene: Ajs_3394: Acyl-CoA dehydrogenase family protein |
Gene: CtesDRAFT_4860: Acyl-CoA dehydrogenase family protein |
Gene: Daci_5375: Acyl-CoA dehydrogenase family protein |
Gene: Pnap_3225: Acyl-CoA dehydrogenase family protein |
Gene: Bpro_3846: Acyl-CoA dehydrogenase family protein |
Gene: Rfer_1645: Acyl-CoA dehydrogenase family protein |
Gene: Vapar_1273: Acyl-CoA dehydrogenase family protein |
Gene: Veis_2105: Acyl-CoA dehydrogenase family protein |
|
Gene: Lcho_1239: Acyl-CoA dehydrogenase family protein |
Acyl-CoA dehydrogenase family protein |
| CRON 2. | ||||||||||||
| etfD |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -121 score = 5.40184 sequence = AAGAACGATCGTTCGT Gene: Aave_3139: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Acidovorax sp. JS42 Site: position = -117 score = 4.8903 sequence = GTGAACGACCGTGCGA Gene: Ajs_1950: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Gene: CtesDRAFT_1583: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Delftia acidovorans SPH-1 Site: position = -60 score = 4.52172 sequence = CCGAACGAACGTTCGG Gene: Daci_4310: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
2
Polaromonas naphthalenivorans CJ2 Gene: Pnap_3283: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Pnap_2679: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
2
Polaromonas sp. JS666 Gene: Bpro_5295: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Bpro_1895: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*3
Rhodoferax ferrireducens DSM 15236 Site: position = -85 score = 5.54809 sequence = AAGAACGATCGTTCTA Gene: Rfer_3018: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Rfer_2269: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Rfer_4163: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Gene: Vapar_3289: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -103 score = 5.00591 sequence = TGGAACGGTCGTTCGC Gene: Veis_3981: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*
Methylibium petroleiphilum PM1 Site: position = -87 score = 5.68119 sequence = TAGAACGACCGTTCGT Gene: Mpe_A1443: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
*3
Leptothrix cholodnii SP-6 Gene: Lcho_0158: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Lcho_1192: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Site: position = -108 score = 5.07358 sequence = AAGCACGGTCGTGCTA Gene: Lcho_2069: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) |
| CRON 3. | ||||||||||||
| fadB |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -41 score = 5.29754 sequence = AAGCACGACCGTTCTT Gene: Aave_2880: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: Ajs_1684: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Comamonas testosteroni KF-1 Site: position = -44 score = 5.20312 sequence = ACGCACGACCGTTCTT Gene: CtesDRAFT_0956: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Delftia acidovorans SPH-1 Site: position = -41 score = 5.51281 sequence = TCGCACGATCGTTCTT Gene: Daci_3313: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Polaromonas naphthalenivorans CJ2 Site: position = -106 score = 4.85455 sequence = AAGAACGGTCGTACTA Gene: Pnap_1842: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Polaromonas sp. JS666 Site: position = -86 score = 4.85455 sequence = AAGAACGGTCGTACTA Gene: Bpro_2573: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -40 score = 5.65533 sequence = TCGCACGATCGTTCTA Gene: Rfer_2386: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
Gene: Vapar_2925: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -40 score = 4.6353 sequence = ACGCACGCCCGTTCTT Gene: Veis_1792: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
*
Methylibium petroleiphilum PM1 Site: position = -47 score = 5.74819 sequence = TCGAACGATCGTTCTA Gene: Mpe_A1775: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
|
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) |
| fadA |
Gene: Aave_2879: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Ajs_1685: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: CtesDRAFT_0957: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Daci_3314: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Pnap_1843: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Bpro_2572: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Rfer_2385: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Vapar_2923: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Veis_1791: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
Gene: Mpe_A1776: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
|
3-ketoacyl-CoA thiolase (EC 2.3.1.16) |
| Aave_2878 |
Gene: Aave_2878: Phenylacetic acid degradation protein paaI |
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Gene: Bpro_2571: Phenylacetic acid degradation protein paaI |
Gene: Rfer_0974: Phenylacetic acid degradation protein paaI |
Gene: Vapar_3624: Phenylacetic acid degradation protein paaI |
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Phenylacetic acid degradation protein paaI |
| acdH3 |
Gene: Aave_2877: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Ajs_1687: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: CtesDRAFT_0958: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Daci_3315: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
|
Gene: Bpro_2570: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rfer_2384: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Vapar_2922: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Veis_1790: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Mpe_A1777: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
|
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| CRON 4. | ||||||||||||
| Rfer_3608 |
*
Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -31 score = 5.27166 sequence = AAGAACGATCGTGCTT Gene: Aave_0441: FIG026291: Hypothetical periplasmic protein |
*
Acidovorax sp. JS42 Site: position = -31 score = 5.31115 sequence = ACGAACGATCGTTCTT Gene: Ajs_0365: FIG026291: Hypothetical periplasmic protein |
*
Comamonas testosteroni KF-1 Site: position = -69 score = 4.99492 sequence = ATGCACGACCGTTCGC Gene: CtesDRAFT_3565: FIG026291: Hypothetical periplasmic protein |
Gene: Daci_0748: FIG026291: Hypothetical periplasmic protein |
*
Polaromonas naphthalenivorans CJ2 Site: position = -41 score = 5.53292 sequence = AAGAACGACCGTTCTA Gene: Pnap_3655: FIG026291: Hypothetical periplasmic protein |
*
Polaromonas sp. JS666 Site: position = -56 score = 5.53292 sequence = AAGAACGACCGTTCTA Gene: Bpro_4459: FIG026291: Hypothetical periplasmic protein |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -29 score = 5.50202 sequence = TAGCACGGTCGTTCTA Gene: Rfer_3608: FIG026291: Hypothetical periplasmic protein |
*
Variovorax paradoxus S110 Site: position = -32 score = 5.53849 sequence = TCGAACGATCGTTCGC Gene: Vapar_0572: FIG026291: Hypothetical periplasmic protein |
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FIG026291: Hypothetical periplasmic protein |
| CRON 5. | ||||||||||||
| fadP |
Gene: Aave_4090: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Acidovorax sp. JS42 Site: position = -29 score = 5.69636 sequence = TAGAACGATCGTTCGT Gene: Ajs_0591: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Comamonas testosteroni KF-1 Site: position = -31 score = 5.11898 sequence = TAGAACGAACGTTCGT Gene: CtesDRAFT_3123: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Delftia acidovorans SPH-1 Site: position = -33 score = 5.02612 sequence = TAGCACGAACGTTCGT Gene: Daci_1336: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Polaromonas naphthalenivorans CJ2 Site: position = -31 score = 5.68493 sequence = TAGAACGACCGTTCTT Gene: Pnap_3478: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Polaromonas sp. JS666 Site: position = -35 score = 5.69636 sequence = TAGAACGATCGTTCGT Gene: Bpro_3958: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Rhodoferax ferrireducens DSM 15236 Site: position = -26 score = 5.60723 sequence = TAGCACGATCGTTCTT Gene: Rfer_3520: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Variovorax paradoxus S110 Site: position = -36 score = 5.68119 sequence = TAGAACGACCGTTCGT Gene: Vapar_0809: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Verminephrobacter eiseniae EF01-2 Site: position = 31 score = 5.7001 sequence = TAGAACGATCGTTCTT Gene: Veis_1225: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Methylibium petroleiphilum PM1 Site: position = -34 score = 5.83888 sequence = TAGAACGATCGTTCGA Gene: Mpe_A0420: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
*
Leptothrix cholodnii SP-6 Site: position = -30 score = 5.74601 sequence = TAGCACGATCGTTCGA Gene: Lcho_4033: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family |
| acdH |
Gene: Aave_4089: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Ajs_0592: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: CtesDRAFT_3122: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Daci_1337: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Pnap_3477: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Bpro_3957: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rfer_3519: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Vapar_0810: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Veis_1224: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Mpe_A0419: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Lcho_4032: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| Mpe_A0418 |
Gene: Aave_4088: hypothetical protein |
Gene: Ajs_0593: hypothetical protein |
Gene: CtesDRAFT_3121: hypothetical protein |
Gene: Daci_1338: hypothetical protein |
|
Gene: Bpro_0103: hypothetical protein |
2
Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0322: hypothetical protein Gene: Rfer_3518: hypothetical protein |
2
Variovorax paradoxus S110 Gene: Vapar_0811: hypothetical protein Gene: Vapar_6081: hypothetical protein |
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Gene: Mpe_A0418: hypothetical protein |
|
hypothetical protein |
| acdB |
Gene: Aave_4087: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Ajs_0594: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: CtesDRAFT_3120: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Daci_1339: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Pnap_3476: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Bpro_3956: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Rfer_3517: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Vapar_0812: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
|
Gene: Mpe_A0417: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Gene: Lcho_4031: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
| Vapar_0813 |
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Gene: Vapar_0813: protein of unknown function DUF559 |
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protein of unknown function DUF559 |
| acdA |
Gene: Aave_4085: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Ajs_0595: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: CtesDRAFT_3119: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Daci_1340: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Pnap_3474: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Bpro_3953: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Rfer_3516: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Vapar_0814: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
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Gene: Mpe_A0416: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
Gene: Lcho_4030: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) |
| Ajs_0596 |
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Gene: Ajs_0596: alpha/beta hydrolase-like |
Gene: CtesDRAFT_3118: alpha/beta hydrolase-like |
Gene: Daci_1341: alpha/beta hydrolase-like |
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Gene: Vapar_0815: alpha/beta hydrolase-like |
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alpha/beta hydrolase-like |
| Daci_1342 |
Gene: Aave_4084: TesB-like acyl-CoA thioesterase 2 |
Gene: Ajs_0597: TesB-like acyl-CoA thioesterase 2 |
Gene: CtesDRAFT_3117: TesB-like acyl-CoA thioesterase 2 |
Gene: Daci_1342: TesB-like acyl-CoA thioesterase 2 |
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Gene: Rfer_3513: TesB-like acyl-CoA thioesterase 2 |
Gene: Vapar_0816: TesB-like acyl-CoA thioesterase 2 |
Gene: Veis_1900: TesB-like acyl-CoA thioesterase 2 |
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TesB-like acyl-CoA thioesterase 2 |
| Vapar_0817 |
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Gene: Vapar_0817: short-chain dehydrogenase/reductase SDR |
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short-chain dehydrogenase/reductase SDR |
| Vapar_0818 |
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Gene: Vapar_0818: hypothetical protein |
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hypothetical protein |
| Vapar_0819 |
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Gene: Vapar_0819: DSBA oxidoreductase |
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DSBA oxidoreductase |
| echH |
Gene: Aave_4083: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Ajs_0598: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: CtesDRAFT_3116: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Daci_1343: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Pnap_3473: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Bpro_3932: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Rfer_3512: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Vapar_0820: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Veis_1899: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Mpe_A0414: Enoyl-CoA hydratase (EC 4.2.1.17) |
Gene: Lcho_4029: Enoyl-CoA hydratase (EC 4.2.1.17) |
Enoyl-CoA hydratase (EC 4.2.1.17) |
| Mpe_A0415 |
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Gene: Mpe_A0415: hypothetical protein |
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hypothetical protein |
| Bpro_3955 |
Gene: Aave_4086: hypothetical protein |
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Gene: Pnap_3475: hypothetical protein |
Gene: Bpro_3955: hypothetical protein |
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hypothetical protein |
| Bpro_3954 |
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Gene: Bpro_3954: DNA methylase, putative |
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DNA methylase, putative |
| CRON 6. | ||||||||||||
| etfB |
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Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -142 score = 5.31271 sequence = AAGCACGATCGTTCTT Gene: Aave_2168: Electron transfer flavoprotein, beta subunit |
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Acidovorax sp. JS42 Site: position = -122 score = 5.30897 sequence = AAGCACGATCGTTCGT Gene: Ajs_2810: Electron transfer flavoprotein, beta subunit |
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Delftia acidovorans SPH-1 Site: position = -138 score = 5.22797 sequence = TGGCACGATCGTTCTT Gene: Daci_2390: Electron transfer flavoprotein, beta subunit |
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Polaromonas naphthalenivorans CJ2 Site: position = -147 score = 5.68493 sequence = TAGAACGACCGTTCTT Gene: Pnap_1223: Electron transfer flavoprotein, beta subunit |
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Polaromonas sp. JS666 Site: position = -142 score = 5.68493 sequence = TAGAACGACCGTTCTT Gene: Bpro_3143: Electron transfer flavoprotein, beta subunit |
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Rhodoferax ferrireducens DSM 15236 Site: position = -163 score = 4.99425 sequence = AAGCACGACCGTACTA Gene: Rfer_1957: Electron transfer flavoprotein, beta subunit |
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Variovorax paradoxus S110 Site: position = -131 score = 5.06498 sequence = AAGCACGGTCGTTCTT Gene: Vapar_3374: Electron transfer flavoprotein, beta subunit |
Gene: Veis_2093: Electron transfer flavoprotein, beta subunit |
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Methylibium petroleiphilum PM1 Site: position = -98 score = 5.1209 sequence = CCGAACGATCGTGCTT Gene: Mpe_A1296: Electron transfer flavoprotein, beta subunit |
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Leptothrix cholodnii SP-6 Site: position = -99 score = 5.31037 sequence = TAGTACGATCGTGCTT Gene: Lcho_2540: Electron transfer flavoprotein, beta subunit |
Electron transfer flavoprotein, beta subunit |
| etfA |
Gene: Aave_2169: Electron transfer flavoprotein, alpha subunit |
Gene: Ajs_2809: Electron transfer flavoprotein, alpha subunit |
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Gene: Daci_2391: Electron transfer flavoprotein, alpha subunit |
Gene: Pnap_1224: Electron transfer flavoprotein, alpha subunit |
Gene: Bpro_3142: Electron transfer flavoprotein, alpha subunit |
Gene: Rfer_1958: Electron transfer flavoprotein, alpha subunit |
Gene: Vapar_3373: Electron transfer flavoprotein, alpha subunit |
Gene: Veis_2092: Electron transfer flavoprotein, alpha subunit |
Gene: Mpe_A1297: Electron transfer flavoprotein, alpha subunit |
Gene: Lcho_2539: Electron transfer flavoprotein, alpha subunit |
Electron transfer flavoprotein, alpha subunit |
| Daci_2392 |
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Gene: Daci_2392: Extracellular ligand-binding receptor |
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Extracellular ligand-binding receptor |
| acdH2 |
Gene: Aave_2170: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Ajs_2808: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: CtesDRAFT_1104: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Daci_2393: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Pnap_1225: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Bpro_3141: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Rfer_1959: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Vapar_3372: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Veis_2091: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Mpe_A1298: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Gene: Lcho_2538: Acyl-CoA dehydrogenase (EC 1.3.99.3) |
Acyl-CoA dehydrogenase (EC 1.3.99.3) |
| BPSL0328 |
Gene: Aave_2171: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Ajs_2807: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: CtesDRAFT_0550: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Daci_2394: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Pnap_1226: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Bpro_3140: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Rfer_1960: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Vapar_3371: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Veis_2090: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Mpe_A1299: Dioxygenases related to 2-nitropropane dioxygenase |
Gene: Lcho_2537: Dioxygenases related to 2-nitropropane dioxygenase |
Dioxygenases related to 2-nitropropane dioxygenase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |