Regulog FadP - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:
Biological process:	Fatty acid degradation
Effector:
Phylum:	Proteobacteria/beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 46 sites [see more]

Member of regulog collections

By trascription factor - FadP
By taxonomy - Comamonadaceae
By TF family - TetR
By pathway - Fatty acid degradation

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1	12	5
Acidovorax sp. JS42	16	5
Comamonas testosteroni KF-1	12	3
Delftia acidovorans SPH-1	17	4
Polaromonas naphthalenivorans CJ2	13	4
Polaromonas sp. JS666	15	4
Rhodoferax ferrireducens DSM 15236	16	6
Variovorax paradoxus S110	19	4
Verminephrobacter eiseniae EF01-2	8	4
Methylibium petroleiphilum PM1	15	4
Leptothrix cholodnii SP-6	10	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
acdQ	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -66 score = 5.30615 sequence = AAGCACGACCGTGCTA Gene: Aave_3439: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	* Acidovorax sp. JS42 Site: position = -43 score = 4.73833 sequence = AAGCACGCCCGTGCTA Gene: Ajs_3393: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4861: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Delftia acidovorans SPH-1 Gene: Daci_5374: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3224: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Polaromonas sp. JS666 Gene: Bpro_3845: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	* Rhodoferax ferrireducens DSM 15236 Site: position = -144 score = 5.52142 sequence = TCGCACGATCGTGCTA Gene: Rfer_1646: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	* Variovorax paradoxus S110 Site: position = -87 score = 5.24981 sequence = CAGCACGACCGTGCTA Gene: Vapar_1274: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	* Verminephrobacter eiseniae EF01-2 Site: position = -49 score = 5.31976 sequence = ACGAACGATCGTGCTA Gene: Veis_2104: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6 Gene: Lcho_1240: Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)	Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13)
acdP	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_3440: Acyl-CoA dehydrogenase family protein	Acidovorax sp. JS42 Gene: Ajs_3394: Acyl-CoA dehydrogenase family protein	Comamonas testosteroni KF-1 Gene: CtesDRAFT_4860: Acyl-CoA dehydrogenase family protein	Delftia acidovorans SPH-1 Gene: Daci_5375: Acyl-CoA dehydrogenase family protein	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3225: Acyl-CoA dehydrogenase family protein	Polaromonas sp. JS666 Gene: Bpro_3846: Acyl-CoA dehydrogenase family protein	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1645: Acyl-CoA dehydrogenase family protein	Variovorax paradoxus S110 Gene: Vapar_1273: Acyl-CoA dehydrogenase family protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_2105: Acyl-CoA dehydrogenase family protein	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6 Gene: Lcho_1239: Acyl-CoA dehydrogenase family protein	Acyl-CoA dehydrogenase family protein

CRON 2.
etfD	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -121 score = 5.40184 sequence = AAGAACGATCGTTCGT Gene: Aave_3139: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Acidovorax sp. JS42 Site: position = -117 score = 4.8903 sequence = GTGAACGACCGTGCGA Gene: Ajs_1950: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_1583: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Delftia acidovorans SPH-1 Site: position = -60 score = 4.52172 sequence = CCGAACGAACGTTCGG Gene: Daci_4310: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	2 Polaromonas naphthalenivorans CJ2 Gene: Pnap_3283: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Pnap_2679: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	2 Polaromonas sp. JS666 Gene: Bpro_5295: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Bpro_1895: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	3 Rhodoferax ferrireducens DSM 15236* Site: position = -85 score = 5.54809 sequence = AAGAACGATCGTTCTA Gene: Rfer_3018: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Rfer_2269: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Rfer_4163: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Variovorax paradoxus S110 Gene: Vapar_3289: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Verminephrobacter eiseniae EF01-2 Site: position = -103 score = 5.00591 sequence = TGGAACGGTCGTTCGC Gene: Veis_3981: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	* Methylibium petroleiphilum PM1 Site: position = -87 score = 5.68119 sequence = TAGAACGACCGTTCGT Gene: Mpe_A1443: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	3 Leptothrix cholodnii SP-6* Gene: Lcho_0158: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Gene: Lcho_1192: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1) Site: position = -108 score = 5.07358 sequence = AAGCACGGTCGTGCTA Gene: Lcho_2069: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)	Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)

CRON 3.
fadB	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -41 score = 5.29754 sequence = AAGCACGACCGTTCTT Gene: Aave_2880: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Acidovorax sp. JS42 Gene: Ajs_1684: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Comamonas testosteroni KF-1 Site: position = -44 score = 5.20312 sequence = ACGCACGACCGTTCTT Gene: CtesDRAFT_0956: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Delftia acidovorans SPH-1 Site: position = -41 score = 5.51281 sequence = TCGCACGATCGTTCTT Gene: Daci_3313: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Polaromonas naphthalenivorans CJ2 Site: position = -106 score = 4.85455 sequence = AAGAACGGTCGTACTA Gene: Pnap_1842: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Polaromonas sp. JS666 Site: position = -86 score = 4.85455 sequence = AAGAACGGTCGTACTA Gene: Bpro_2573: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Rhodoferax ferrireducens DSM 15236 Site: position = -40 score = 5.65533 sequence = TCGCACGATCGTTCTA Gene: Rfer_2386: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Variovorax paradoxus S110 Gene: Vapar_2925: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Verminephrobacter eiseniae EF01-2 Site: position = -40 score = 4.6353 sequence = ACGCACGCCCGTTCTT Gene: Veis_1792: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	* Methylibium petroleiphilum PM1 Site: position = -47 score = 5.74819 sequence = TCGAACGATCGTTCTA Gene: Mpe_A1775: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)	Leptothrix cholodnii SP-6	Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
fadA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2879: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Acidovorax sp. JS42 Gene: Ajs_1685: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0957: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Delftia acidovorans SPH-1 Gene: Daci_3314: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1843: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Polaromonas sp. JS666 Gene: Bpro_2572: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2385: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Variovorax paradoxus S110 Gene: Vapar_2923: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1791: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Methylibium petroleiphilum PM1 Gene: Mpe_A1776: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)	Leptothrix cholodnii SP-6	3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Aave_2878	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2878: Phenylacetic acid degradation protein paaI	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_2571: Phenylacetic acid degradation protein paaI	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0974: Phenylacetic acid degradation protein paaI	Variovorax paradoxus S110 Gene: Vapar_3624: Phenylacetic acid degradation protein paaI	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Phenylacetic acid degradation protein paaI
acdH3	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2877: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acidovorax sp. JS42 Gene: Ajs_1687: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0958: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Delftia acidovorans SPH-1 Gene: Daci_3315: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_2570: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_2384: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Variovorax paradoxus S110 Gene: Vapar_2922: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1790: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Methylibium petroleiphilum PM1 Gene: Mpe_A1777: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Leptothrix cholodnii SP-6	Acyl-CoA dehydrogenase (EC 1.3.99.3)

CRON 4.
Rfer_3608	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -31 score = 5.27166 sequence = AAGAACGATCGTGCTT Gene: Aave_0441: FIG026291: Hypothetical periplasmic protein	* Acidovorax sp. JS42 Site: position = -31 score = 5.31115 sequence = ACGAACGATCGTTCTT Gene: Ajs_0365: FIG026291: Hypothetical periplasmic protein	* Comamonas testosteroni KF-1 Site: position = -69 score = 4.99492 sequence = ATGCACGACCGTTCGC Gene: CtesDRAFT_3565: FIG026291: Hypothetical periplasmic protein	Delftia acidovorans SPH-1 Gene: Daci_0748: FIG026291: Hypothetical periplasmic protein	* Polaromonas naphthalenivorans CJ2 Site: position = -41 score = 5.53292 sequence = AAGAACGACCGTTCTA Gene: Pnap_3655: FIG026291: Hypothetical periplasmic protein	* Polaromonas sp. JS666 Site: position = -56 score = 5.53292 sequence = AAGAACGACCGTTCTA Gene: Bpro_4459: FIG026291: Hypothetical periplasmic protein	* Rhodoferax ferrireducens DSM 15236 Site: position = -29 score = 5.50202 sequence = TAGCACGGTCGTTCTA Gene: Rfer_3608: FIG026291: Hypothetical periplasmic protein	* Variovorax paradoxus S110 Site: position = -32 score = 5.53849 sequence = TCGAACGATCGTTCGC Gene: Vapar_0572: FIG026291: Hypothetical periplasmic protein	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	FIG026291: Hypothetical periplasmic protein

CRON 5.
fadP	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4090: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Acidovorax sp. JS42 Site: position = -29 score = 5.69636 sequence = TAGAACGATCGTTCGT Gene: Ajs_0591: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Comamonas testosteroni KF-1 Site: position = -31 score = 5.11898 sequence = TAGAACGAACGTTCGT Gene: CtesDRAFT_3123: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Delftia acidovorans SPH-1 Site: position = -33 score = 5.02612 sequence = TAGCACGAACGTTCGT Gene: Daci_1336: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Polaromonas naphthalenivorans CJ2 Site: position = -31 score = 5.68493 sequence = TAGAACGACCGTTCTT Gene: Pnap_3478: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Polaromonas sp. JS666 Site: position = -35 score = 5.69636 sequence = TAGAACGATCGTTCGT Gene: Bpro_3958: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Rhodoferax ferrireducens DSM 15236 Site: position = -26 score = 5.60723 sequence = TAGCACGATCGTTCTT Gene: Rfer_3520: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Variovorax paradoxus S110 Site: position = -36 score = 5.68119 sequence = TAGAACGACCGTTCGT Gene: Vapar_0809: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Verminephrobacter eiseniae EF01-2 Site: position = 31 score = 5.7001 sequence = TAGAACGATCGTTCTT Gene: Veis_1225: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Methylibium petroleiphilum PM1 Site: position = -34 score = 5.83888 sequence = TAGAACGATCGTTCGA Gene: Mpe_A0420: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	* Leptothrix cholodnii SP-6 Site: position = -30 score = 5.74601 sequence = TAGCACGATCGTTCGA Gene: Lcho_4033: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family	Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
acdH	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4089: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acidovorax sp. JS42 Gene: Ajs_0592: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3122: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Delftia acidovorans SPH-1 Gene: Daci_1337: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3477: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Polaromonas sp. JS666 Gene: Bpro_3957: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3519: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Variovorax paradoxus S110 Gene: Vapar_0810: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1224: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Methylibium petroleiphilum PM1 Gene: Mpe_A0419: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Leptothrix cholodnii SP-6 Gene: Lcho_4032: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Mpe_A0418	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4088: hypothetical protein	Acidovorax sp. JS42 Gene: Ajs_0593: hypothetical protein	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3121: hypothetical protein	Delftia acidovorans SPH-1 Gene: Daci_1338: hypothetical protein	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_0103: hypothetical protein	2 Rhodoferax ferrireducens DSM 15236 Gene: Rfer_0322: hypothetical protein Gene: Rfer_3518: hypothetical protein	2 Variovorax paradoxus S110 Gene: Vapar_0811: hypothetical protein Gene: Vapar_6081: hypothetical protein	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A0418: hypothetical protein	Leptothrix cholodnii SP-6	hypothetical protein
acdB	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4087: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Acidovorax sp. JS42 Gene: Ajs_0594: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3120: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Delftia acidovorans SPH-1 Gene: Daci_1339: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3476: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Polaromonas sp. JS666 Gene: Bpro_3956: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3517: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Variovorax paradoxus S110 Gene: Vapar_0812: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A0417: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Leptothrix cholodnii SP-6 Gene: Lcho_4031: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)	Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Vapar_0813	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0813: protein of unknown function DUF559	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	protein of unknown function DUF559
acdA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4085: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Acidovorax sp. JS42 Gene: Ajs_0595: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3119: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Delftia acidovorans SPH-1 Gene: Daci_1340: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3474: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Polaromonas sp. JS666 Gene: Bpro_3953: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3516: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Variovorax paradoxus S110 Gene: Vapar_0814: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A0416: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	Leptothrix cholodnii SP-6 Gene: Lcho_4030: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)	3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
Ajs_0596	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42 Gene: Ajs_0596: alpha/beta hydrolase-like	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3118: alpha/beta hydrolase-like	Delftia acidovorans SPH-1 Gene: Daci_1341: alpha/beta hydrolase-like	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0815: alpha/beta hydrolase-like	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	alpha/beta hydrolase-like
Daci_1342	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4084: TesB-like acyl-CoA thioesterase 2	Acidovorax sp. JS42 Gene: Ajs_0597: TesB-like acyl-CoA thioesterase 2	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3117: TesB-like acyl-CoA thioesterase 2	Delftia acidovorans SPH-1 Gene: Daci_1342: TesB-like acyl-CoA thioesterase 2	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3513: TesB-like acyl-CoA thioesterase 2	Variovorax paradoxus S110 Gene: Vapar_0816: TesB-like acyl-CoA thioesterase 2	Verminephrobacter eiseniae EF01-2 Gene: Veis_1900: TesB-like acyl-CoA thioesterase 2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	TesB-like acyl-CoA thioesterase 2
Vapar_0817	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0817: short-chain dehydrogenase/reductase SDR	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	short-chain dehydrogenase/reductase SDR
Vapar_0818	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0818: hypothetical protein	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	hypothetical protein
Vapar_0819	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0819: DSBA oxidoreductase	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	DSBA oxidoreductase
echH	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4083: Enoyl-CoA hydratase (EC 4.2.1.17)	Acidovorax sp. JS42 Gene: Ajs_0598: Enoyl-CoA hydratase (EC 4.2.1.17)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_3116: Enoyl-CoA hydratase (EC 4.2.1.17)	Delftia acidovorans SPH-1 Gene: Daci_1343: Enoyl-CoA hydratase (EC 4.2.1.17)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3473: Enoyl-CoA hydratase (EC 4.2.1.17)	Polaromonas sp. JS666 Gene: Bpro_3932: Enoyl-CoA hydratase (EC 4.2.1.17)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_3512: Enoyl-CoA hydratase (EC 4.2.1.17)	Variovorax paradoxus S110 Gene: Vapar_0820: Enoyl-CoA hydratase (EC 4.2.1.17)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1899: Enoyl-CoA hydratase (EC 4.2.1.17)	Methylibium petroleiphilum PM1 Gene: Mpe_A0414: Enoyl-CoA hydratase (EC 4.2.1.17)	Leptothrix cholodnii SP-6 Gene: Lcho_4029: Enoyl-CoA hydratase (EC 4.2.1.17)	Enoyl-CoA hydratase (EC 4.2.1.17)
Mpe_A0415	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1 Gene: Mpe_A0415: hypothetical protein	Leptothrix cholodnii SP-6	hypothetical protein
Bpro_3955	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_4086: hypothetical protein	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2 Gene: Pnap_3475: hypothetical protein	Polaromonas sp. JS666 Gene: Bpro_3955: hypothetical protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	hypothetical protein
Bpro_3954	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3954: DNA methylase, putative	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	DNA methylase, putative

CRON 6.
etfB	* Acidovorax avenae subsp. citrulli AAC00-1 Site: position = -142 score = 5.31271 sequence = AAGCACGATCGTTCTT Gene: Aave_2168: Electron transfer flavoprotein, beta subunit	* Acidovorax sp. JS42 Site: position = -122 score = 5.30897 sequence = AAGCACGATCGTTCGT Gene: Ajs_2810: Electron transfer flavoprotein, beta subunit	Comamonas testosteroni KF-1	* Delftia acidovorans SPH-1 Site: position = -138 score = 5.22797 sequence = TGGCACGATCGTTCTT Gene: Daci_2390: Electron transfer flavoprotein, beta subunit	* Polaromonas naphthalenivorans CJ2 Site: position = -147 score = 5.68493 sequence = TAGAACGACCGTTCTT Gene: Pnap_1223: Electron transfer flavoprotein, beta subunit	* Polaromonas sp. JS666 Site: position = -142 score = 5.68493 sequence = TAGAACGACCGTTCTT Gene: Bpro_3143: Electron transfer flavoprotein, beta subunit	* Rhodoferax ferrireducens DSM 15236 Site: position = -163 score = 4.99425 sequence = AAGCACGACCGTACTA Gene: Rfer_1957: Electron transfer flavoprotein, beta subunit	* Variovorax paradoxus S110 Site: position = -131 score = 5.06498 sequence = AAGCACGGTCGTTCTT Gene: Vapar_3374: Electron transfer flavoprotein, beta subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2093: Electron transfer flavoprotein, beta subunit	* Methylibium petroleiphilum PM1 Site: position = -98 score = 5.1209 sequence = CCGAACGATCGTGCTT Gene: Mpe_A1296: Electron transfer flavoprotein, beta subunit	* Leptothrix cholodnii SP-6 Site: position = -99 score = 5.31037 sequence = TAGTACGATCGTGCTT Gene: Lcho_2540: Electron transfer flavoprotein, beta subunit	Electron transfer flavoprotein, beta subunit
etfA	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2169: Electron transfer flavoprotein, alpha subunit	Acidovorax sp. JS42 Gene: Ajs_2809: Electron transfer flavoprotein, alpha subunit	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_2391: Electron transfer flavoprotein, alpha subunit	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1224: Electron transfer flavoprotein, alpha subunit	Polaromonas sp. JS666 Gene: Bpro_3142: Electron transfer flavoprotein, alpha subunit	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1958: Electron transfer flavoprotein, alpha subunit	Variovorax paradoxus S110 Gene: Vapar_3373: Electron transfer flavoprotein, alpha subunit	Verminephrobacter eiseniae EF01-2 Gene: Veis_2092: Electron transfer flavoprotein, alpha subunit	Methylibium petroleiphilum PM1 Gene: Mpe_A1297: Electron transfer flavoprotein, alpha subunit	Leptothrix cholodnii SP-6 Gene: Lcho_2539: Electron transfer flavoprotein, alpha subunit	Electron transfer flavoprotein, alpha subunit
Daci_2392	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1 Gene: Daci_2392: Extracellular ligand-binding receptor	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Methylibium petroleiphilum PM1	Leptothrix cholodnii SP-6	Extracellular ligand-binding receptor
acdH2	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2170: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acidovorax sp. JS42 Gene: Ajs_2808: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Comamonas testosteroni KF-1 Gene: CtesDRAFT_1104: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Delftia acidovorans SPH-1 Gene: Daci_2393: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1225: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Polaromonas sp. JS666 Gene: Bpro_3141: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1959: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Variovorax paradoxus S110 Gene: Vapar_3372: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Verminephrobacter eiseniae EF01-2 Gene: Veis_2091: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Methylibium petroleiphilum PM1 Gene: Mpe_A1298: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Leptothrix cholodnii SP-6 Gene: Lcho_2538: Acyl-CoA dehydrogenase (EC 1.3.99.3)	Acyl-CoA dehydrogenase (EC 1.3.99.3)
BPSL0328	Acidovorax avenae subsp. citrulli AAC00-1 Gene: Aave_2171: Dioxygenases related to 2-nitropropane dioxygenase	Acidovorax sp. JS42 Gene: Ajs_2807: Dioxygenases related to 2-nitropropane dioxygenase	Comamonas testosteroni KF-1 Gene: CtesDRAFT_0550: Dioxygenases related to 2-nitropropane dioxygenase	Delftia acidovorans SPH-1 Gene: Daci_2394: Dioxygenases related to 2-nitropropane dioxygenase	Polaromonas naphthalenivorans CJ2 Gene: Pnap_1226: Dioxygenases related to 2-nitropropane dioxygenase	Polaromonas sp. JS666 Gene: Bpro_3140: Dioxygenases related to 2-nitropropane dioxygenase	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_1960: Dioxygenases related to 2-nitropropane dioxygenase	Variovorax paradoxus S110 Gene: Vapar_3371: Dioxygenases related to 2-nitropropane dioxygenase	Verminephrobacter eiseniae EF01-2 Gene: Veis_2090: Dioxygenases related to 2-nitropropane dioxygenase	Methylibium petroleiphilum PM1 Gene: Mpe_A1299: Dioxygenases related to 2-nitropropane dioxygenase	Leptothrix cholodnii SP-6 Gene: Lcho_2537: Dioxygenases related to 2-nitropropane dioxygenase	Dioxygenases related to 2-nitropropane dioxygenase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FadP - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --