Regulog NtrC - Rhodospirillales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | 12 | 4 |
| Magnetospirillum magnetotacticum MS-1 | 16 | 6 |
| Magnetospirillum magneticum AMB-1 | 17 | 7 |
| Azospirillum sp. B510 | 13 | 7 |
| Rhodospirillum centenum SW | 9 | 4 |
| Gluconacetobacter diazotrophicus PAl 5 | 7 | 2 |
| Acetobacter pasteurianus IFO 3283-01 | 5 | 1 |
| Gluconobacter oxydans 621H | ||
| Granulibacter bethesdensis CGDNIH1 | 7 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| potA |
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Rhodospirillum rubrum ATCC 11170 Site: position = -114 score = 3.75218 sequence = CGCCCGTATTTAAGGCA Site: position = -153 score = 4.46833 sequence = TGCAAAAATAATGGGCA Gene: Rru_A2048: Putrescine ABC transporter, ATP-binding component (TC_3.A.1.11.1) |
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Azospirillum sp. B510 Site: position = -146 score = 4.66345 sequence = TGCACAAAAAATCGGCA Site: position = -118 score = 3.98983 sequence = TGATCAAGTCATAGTCA Gene: AZL_c00210: Putrescine ABC transporter, ATP-binding component (TC_3.A.1.11.1) |
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Putrescine ABC transporter, ATP-binding component (TC_3.A.1.11.1) |
| potD |
Gene: Rru_A2047: Putrescine ABC transporter, substrate-binding component (TC_3.A.1.11.1) |
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Gene: AZL_c00220: Putrescine ABC transporter, substrate-binding component (TC_3.A.1.11.1) |
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Putrescine ABC transporter, substrate-binding component (TC_3.A.1.11.1) |
| potB |
Gene: Rru_A2046: Putrescine ABC transporter, transmembrane component 1 (TC_3.A.1.11.1) |
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Gene: AZL_c00230: Putrescine ABC transporter, transmembrane component 1 (TC_3.A.1.11.1) |
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Putrescine ABC transporter, transmembrane component 1 (TC_3.A.1.11.1) |
| potC |
Gene: Rru_A2045: Putrescine ABC transporter, transmembrane component 2 (TC_3.A.1.11.1) |
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Gene: AZL_c00240: Putrescine ABC transporter, transmembrane component 2 (TC_3.A.1.11.1) |
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Putrescine ABC transporter, transmembrane component 2 (TC_3.A.1.11.1) |
| CRON 2. | ||||||||||
| glnK |
Gene: Rru_A0555: Nitrogen regulatory protein P-II |
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Magnetospirillum magnetotacticum MS-1 Site: position = -241 score = 4.16724 sequence = CGCTCAAGATTCGTGCG Gene: Magn03010461: Nitrogen regulatory protein P-II |
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Magnetospirillum magneticum AMB-1 Site: position = -241 score = 4.16724 sequence = CGCTCAAGATTCGTGCG Gene: amb0013: Nitrogen regulatory protein P-II |
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Azospirillum sp. B510 Site: position = -234 score = 3.95668 sequence = TGATCGTATTTTAGGCG Site: position = -200 score = 4.16159 sequence = CGCCCAATCAACGGGCA Gene: AZL_d00720: Nitrogen regulatory protein P-II |
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Rhodospirillum centenum SW Site: position = -186 score = 5.10763 sequence = TGCACAAGAATTGTGCA Gene: RC1_2783: Nitrogen regulatory protein P-II |
*2
Gluconacetobacter diazotrophicus PAl 5 Site: position = -174 score = 4.2363 sequence = AGCCCATAAATCAGGCA Gene: Gdia_0597: Nitrogen regulatory protein P-II Gene: Gdia_1302: Nitrogen regulatory protein P-II |
Gene: APA01_17710: Nitrogen regulatory protein P-II |
Gene: GOX0744: Nitrogen regulatory protein P-II |
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Granulibacter bethesdensis CGDNIH1 Site: position = -91 score = 4.23989 sequence = TGCGTACAAAATGGGCA Gene: GbCGDNIH1_2136: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| amtB |
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Rhodospirillum rubrum ATCC 11170 Site: position = -160 score = 3.92077 sequence = TGCCCGCTTTACGGGCA Gene: Rru_A1129: Ammonium transporter |
Gene: Magn03010462: Ammonium transporter |
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Magnetospirillum magneticum AMB-1 Site: position = -189 score = 4.31404 sequence = TGCCCAAAACTTCATCA Site: position = -220 score = 4.19846 sequence = AGCACAAAATTTGACCA Gene: amb0014: Ammonium transporter |
*2
Azospirillum sp. B510 Site: position = -234 score = 4.33309 sequence = TGATCGAAATTTAAGCA Gene: AZL_a09490: Ammonium transporter Site: position = -276 score = 4.65026 sequence = TGCTCATTTTCTGTGCA Gene: AZL_003060: Ammonium transporter |
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Rhodospirillum centenum SW Site: position = -278 score = 4.80665 sequence = TGCCCAATTCCTGTGCA Site: position = -170 score = 4.83593 sequence = TGCACAATCCTTGGGCA Gene: RC1_2743: Ammonium transporter |
2
Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_0598: Ammonium transporter Gene: Gdia_1303: Ammonium transporter |
Gene: APA01_18280: Ammonium transporter |
Gene: GOX0743: Ammonium transporter |
Gene: GbCGDNIH1_2135: Ammonium transporter |
Ammonium transporter |
| CRON 3. | ||||||||||
| amtB2 |
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Magnetospirillum magnetotacticum MS-1 Site: position = -159 score = 4.63854 sequence = TGATTAAATTTTATGCA Gene: Magn03007796: Ammonium transporter |
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Magnetospirillum magneticum AMB-1 Site: position = -205 score = 4.21686 sequence = TGCTCAAATATTCACCA Site: position = -177 score = 4.33162 sequence = AGCTTATTAATTAAGCA Site: position = -125 score = 4.25994 sequence = CGCCCACTTAATGTGCA Gene: amb1969: Ammonium transporter |
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Azospirillum sp. B510 Site: position = -18 score = 4.33906 sequence = TGCTGAAGGTTTGTGCA Gene: AZL_022880: Ammonium transporter |
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Ammonium transporter |
| CRON 4. | ||||||||||
| nifR3 |
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Rhodospirillum rubrum ATCC 11170 Site: position = -162 score = 4.58672 sequence = TGCCTAATATTTAACCA Gene: Rru_A1676: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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Magnetospirillum magnetotacticum MS-1 Site: position = -20 score = 4.61715 sequence = TGCATAATAAATACGCA Gene: Magn03007966: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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Magnetospirillum magneticum AMB-1 Site: position = -110 score = 4.61715 sequence = TGCATAATAAATACGCA Gene: amb2365: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: AZL_015090: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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Rhodospirillum centenum SW Site: position = -38 score = 4.4764 sequence = CGCCTAATTTTCATGCA Gene: RC1_0127: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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Gluconacetobacter diazotrophicus PAl 5 Site: position = -101 score = 4.72724 sequence = TGCTTAAATCCTGGGCA Gene: Gdia_0487: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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Acetobacter pasteurianus IFO 3283-01 Site: position = -30 score = 4.92869 sequence = TGCCTAAATCATAGGCA Gene: APA01_17530: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: GOX0469: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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Granulibacter bethesdensis CGDNIH1 Site: position = -10 score = 5.07339 sequence = TGCCCAAATCATGGGCA Gene: GbCGDNIH1_1228: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Nitrogen assimilation transcriptional regulator NtrX, Fis family |
| ntrB |
Gene: Rru_A1677: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Magn03007967: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: amb2366: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: AZL_015080: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: RC1_0128: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Gdia_0486: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: APA01_17520: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
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Gene: GbCGDNIH1_1227: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: Rru_A1678: Nitrogen regulation protein NR(I), Fis family |
Gene: Magn03007968: Nitrogen regulation protein NR(I), Fis family |
Gene: amb2367: Nitrogen regulation protein NR(I), Fis family |
Gene: AZL_015070: Nitrogen regulation protein NR(I), Fis family |
Gene: RC1_0129: Nitrogen regulation protein NR(I), Fis family |
Gene: Gdia_0485: Nitrogen regulation protein NR(I), Fis family |
Gene: APA01_17510: Nitrogen regulation protein NR(I), Fis family |
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Gene: GbCGDNIH1_1226: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| ntrY |
Gene: Rru_A1679: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: Magn03007969: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: amb2368: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: AZL_015060: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: RC1_0130: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: Gdia_0484: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: APA01_17500: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: GOX0467: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: GbCGDNIH1_1225: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
| ntrX |
Gene: Rru_A1680: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: Magn03007607: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: amb2369: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: AZL_015050: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: RC1_0131: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: Gdia_0483: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: APA01_17490: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: GOX0466: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: GbCGDNIH1_1224: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Nitrogen assimilation transcriptional regulator NtrX, Fis family |
| CRON 5. | ||||||||||
| nrtA |
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Magnetospirillum magneticum AMB-1 Site: position = -297 score = 4.32365 sequence = CGATTAAATTTTAAGCA Gene: amb0537: Nitrate ABC transporter, substrate-binding component |
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Azospirillum sp. B510 Site: position = -196 score = 4.18912 sequence = TGCACAAAGTATGACCA Gene: AZL_e03510: Nitrate ABC transporter, substrate-binding component |
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Nitrate ABC transporter, substrate-binding component |
| nrtB |
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Gene: amb0536: Nitrate ABC transporter, permease component |
Gene: AZL_e03520: Nitrate ABC transporter, permease component |
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Nitrate ABC transporter, permease component |
| nrtC |
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Gene: amb0535: Nitrate ABC transporter, ATP-binding component |
Gene: AZL_e03530: Nitrate ABC transporter, ATP-binding component |
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Nitrate ABC transporter, ATP-binding component |
| CRON 6. | ||||||||||
| nrtA3 |
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Magnetospirillum magnetotacticum MS-1 Site: position = -299 score = 4.21933 sequence = AGATTAAAATTTGTGCA Gene: Magn03011018: Nitrate ABC transporter, substrate-binding component |
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Nitrate ABC transporter, substrate-binding component |
| nrtB3 |
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Gene: Magn03011017: Nitrate ABC transporter, permease component |
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Nitrate ABC transporter, permease component |
| nrtC3 |
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Gene: Magn03011016: Nitrate ABC transporter, ATP-binding component |
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Nitrate ABC transporter, ATP-binding component |
| nrtA2 |
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Gene: Magn03011015: Nitrate ABC transporter, substrate-binding component |
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Magnetospirillum magneticum AMB-1 Site: position = -289 score = 4.22149 sequence = TGTTTATTTTTTAGGCA Gene: amb0534: Nitrate ABC transporter, substrate-binding component |
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Gene: GbCGDNIH1_1728: Nitrate ABC transporter, substrate-binding component |
Nitrate ABC transporter, substrate-binding component |
| nasD |
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Gene: Magn03011014: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: amb0533: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: AZL_e03500: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Gene: GbCGDNIH1_1727: Nitrite reductase, large subunit (EC 1.7.1.4) |
Nitrite reductase, large subunit (EC 1.7.1.4) |
| nasE |
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Gene: Magn03011013: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: amb0532: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: AZL_e03490: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Gene: GbCGDNIH1_1726: Nitrite reductase, small subunit (EC 1.7.1.4) |
Nitrite reductase, small subunit (EC 1.7.1.4) |
| nasA |
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Gene: Magn03011012: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
Gene: amb0531: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
Gene: AZL_e03480: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
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Gene: GbCGDNIH1_1725: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
| CRON 7. | ||||||||||
| glnB |
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Rhodospirillum rubrum ATCC 11170 Site: position = -194 score = 4.74556 sequence = TGCCTATATTTCGGGCA Gene: Rru_A2085: Nitrogen regulatory protein P-II |
*2
Magnetospirillum magnetotacticum MS-1 Site: position = -116 score = 3.78927 sequence = TGCCTGTTTCGTGCGCA Gene: Magn03006007: Nitrogen regulatory protein P-II Site: position = -162 score = 4.6932 sequence = TGCCCATGAATTAGGCG Gene: Magn03011147: Nitrogen regulatory protein P-II |
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Magnetospirillum magneticum AMB-1 Site: position = -120 score = 4.33313 sequence = TGCCCAGGAAATAGGCG Gene: amb0695: Nitrogen regulatory protein P-II |
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Azospirillum sp. B510 Site: position = -198 score = 4.7903 sequence = TGCACAAATATTGTTCA Gene: AZL_019210: Nitrogen regulatory protein P-II |
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Rhodospirillum centenum SW Site: position = -166 score = 4.98315 sequence = TGCCCATTTTATGGGCA Gene: RC1_1257: Nitrogen regulatory protein P-II |
Gene: Gdia_1481: Nitrogen regulatory protein P-II |
Gene: APA01_06300: Nitrogen regulatory protein P-II |
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Gene: GbCGDNIH1_0959: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| glnA |
Gene: Rru_A2086: Glutamine synthetase type I (EC 6.3.1.2) |
2
Magnetospirillum magnetotacticum MS-1 Gene: Magn03011148: Glutamine synthetase type I (EC 6.3.1.2) Gene: Magn03004285: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: amb0696: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: AZL_019220: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: RC1_1258: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Gdia_1482: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: APA01_06310: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: GOX1101: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: GbCGDNIH1_0957: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |