Regulon of NtrC in Magnetospirillum magneticum AMB-1
| Regulator type: | Transcription factor |
| TF locus tag: | amb2367 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodospirillales |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 7 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -205
Score: 4.2 Sequence: TGCTCAAATATTCACCA
Position: -177
Score: 4.3 Sequence: AGCTTATTAATTAAGCA
Position: -125
Score: 4.3 Sequence: CGCCCACTTAATGTGCA
Locus tag: amb1969
Name: amtB2 Funciton: Ammonium transporter |
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amtB2
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Ammonium transporter
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Position: -110
Score: 4.6 Sequence: TGCATAATAAATACGCA
Locus tag: amb2365
Name: nifR3 Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Locus tag: amb2366
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: amb2367
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: amb2368
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: amb2369
Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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nifR3
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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ntrY
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Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
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ntrX
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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Position: -220
Score: 4.2 Sequence: AGCACAAAATTTGACCA
Position: -189
Score: 4.3 Sequence: TGCCCAAAACTTCATCA
Locus tag: amb0014
Name: amtB Funciton: Ammonium transporter |
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amtB
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Ammonium transporter
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Position: -241
Score: 4.2 Sequence: CGCTCAAGATTCGTGCG
Locus tag: amb0013
Name: glnK Funciton: Nitrogen regulatory protein P-II |
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glnK
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Nitrogen regulatory protein P-II
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Position: -297
Score: 4.3 Sequence: CGATTAAATTTTAAGCA
Locus tag: amb0537
Name: nrtA Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: amb0536
Name: nrtB Funciton: Nitrate ABC transporter, permease component
Locus tag: amb0535
Name: nrtC Funciton: Nitrate ABC transporter, ATP-binding component |
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nrtA
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Nitrate ABC transporter, substrate-binding component
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nrtB
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Nitrate ABC transporter, permease component
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nrtC
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Nitrate ABC transporter, ATP-binding component
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Position: -289
Score: 4.2 Sequence: TGTTTATTTTTTAGGCA
Locus tag: amb0534
Name: nrtA2 Funciton: Nitrate ABC transporter, substrate-binding component
Locus tag: amb0533
Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: amb0532
Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: amb0531
Name: nasA Funciton: Assimilatory nitrate reductase large subunit (EC:1.7.99.4) |
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nrtA2
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Nitrate ABC transporter, substrate-binding component
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nasD
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nasE
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nasA
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Assimilatory nitrate reductase large subunit (EC:1.7.99.4)
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Position: -120
Score: 4.3 Sequence: TGCCCAGGAAATAGGCG
Locus tag: amb0695
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: amb0696
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |