Regulon of NtrC in Rhodospirillum rubrum ATCC 11170
| Regulator type: | Transcription factor |
| TF locus tag: | Rru_A1678 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Rhodospirillales |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 4 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -162
Score: 4.6 Sequence: TGCCTAATATTTAACCA
Locus tag: Rru_A1676
Name: nifR3 Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Locus tag: Rru_A1677
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Rru_A1678
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: Rru_A1679
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: Rru_A1680
Name: ntrX Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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nifR3
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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ntrY
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Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
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ntrX
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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Position: -160
Score: 3.9 Sequence: TGCCCGCTTTACGGGCA
Locus tag: Rru_A1129
Name: amtB Funciton: Ammonium transporter |
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amtB
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Ammonium transporter
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Position: -153
Score: 4.5 Sequence: TGCAAAAATAATGGGCA
Position: -114
Score: 3.8 Sequence: CGCCCGTATTTAAGGCA
Locus tag: Rru_A2048
Name: potA Funciton: Putrescine ABC transporter, ATP-binding component (TC_3.A.1.11.1)
Locus tag: Rru_A2047
Name: potD Funciton: Putrescine ABC transporter, substrate-binding component (TC_3.A.1.11.1)
Locus tag: Rru_A2046
Name: potB Funciton: Putrescine ABC transporter, transmembrane component 1 (TC_3.A.1.11.1)
Locus tag: Rru_A2045
Name: potC Funciton: Putrescine ABC transporter, transmembrane component 2 (TC_3.A.1.11.1) |
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potA
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Putrescine ABC transporter, ATP-binding component (TC_3.A.1.11.1)
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potD
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Putrescine ABC transporter, substrate-binding component (TC_3.A.1.11.1)
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potB
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Putrescine ABC transporter, transmembrane component 1 (TC_3.A.1.11.1)
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potC
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Putrescine ABC transporter, transmembrane component 2 (TC_3.A.1.11.1)
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Position: -194
Score: 4.7 Sequence: TGCCTATATTTCGGGCA
Locus tag: Rru_A2085
Name: glnB Funciton: Nitrogen regulatory protein P-II
Locus tag: Rru_A2086
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Nitrogen regulatory protein P-II
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |