Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulons of Roseovarius sp. 217

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 6 5
TF CceR (GapR) 6-phosphogluconate Central carbohydrate metabolism 15 11
TF CueR Copper ion, (Cu+) Copper resistance 5 5
TF EutR Ethanolamine Ethanolamine utilization 2 4
TF FnrN Oxygen Oxidative stress response; Nitrogen fixation 10 11
TF HrcA Heat shock Heat shock response 1 1
TF HutC cis-Urocanic acid Histidine utilization 4 4
TF Irr Heme Iron homeostasis 7 4
TF IscR Iron-sulfur cluster redox state; Iron ion, (Fe2+) Iron-sulfur cluster biogenesis; Iron homeostasis 10 10
TF LexA DNA damage SOS response 11 10
TF LiuR Branched-chain amino acid degradation 1 1
TF MetR Homocysteine Methionine biosynthesis 3 3
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 1
TF ModE2 Molybdate Molybdenum homeostasis 1 2
TF Mur Manganese ion, (Mn2+) Manganese homeostasis 3 1
TF NnrR Nitric oxide Denitrification 7 4
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NsrR Nitric oxide Nitrosative stress response 4 4
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 9 7
TF Pden_3389 Glycolate utilization; Lactate utilization 2 6
TF PhnF Phosphonate utilization 2 2
TF PpsR Blue light Photosynthesis 11 17
TF RutR Uracil Pyrimidine utilization 6 4
TF SPO0590 Sugar utilization 2 2
TF SPOA0375 2 2
TF SPOA0379 2 2
TF TauR Taurine Taurine utilization 5 2
TF TauR2 2 2
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 2
RNA Cobalamin Adenosylcobalamin Cobalamin biosynthesis 9 2
RNA Glycine Glycine Glycine metabolism 1 2
RNA PreQ1 Pre-queuosine1 Queuosine biosynthesis 1 1
RNA S15 Ribosome biogenesis 1 1
RNA SAM-SAH S-adenosylmethionine; S-adenosylhomocysteine Methionine metabolism 1 1
RNA SAM_alpha S-adenosylmethionine Methionine biosynthesis 3 1
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 3 3
RNA mini-ykkC Multidrug resistance 1 1
RNA serC Serine biosynthesis 1 1
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