Regulons of Ruminococcus gnavus ATCC 29149

Allows to visualize regulome content in the context of metabolic pathways



Type	Regulator	Effector	Pathway	Operons	Sites
TF	ArgR	Arginine	Arginine biosynthesis	6	3
TF	BirA	Biotin	Biotin biosynthesis	3	2
TF	CzrA	Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+)	Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance	1	1
TF	Fur	Iron ion, (Fe2+)	Iron homeostasis	5	2
TF	HisR	Histidine	Histidine biosynthesis	3	3
TF	HrcA	Heat shock	Heat shock response	6	6
TF	IdeR	Iron ion, (Fe2+)	Iron homeostasis	8	8
TF	IscR	Iron-sulfur cluster redox state	Iron-sulfur cluster biogenesis	1	1
TF	LexA	DNA damage	SOS response	5	7
TF	NiaR	Niacin	NAD biosynthesis	1	1
TF	NrdR	Deoxyribonucleotides	Deoxyribonucleotide biosynthesis	5	7
TF	PdxR	Pyridoxal-5-phosphate	Pyridoxine biosynthesis	3	2
TF	RUMGNA_00848		Multidrug resistance; Multidrug efflux	1	1
TF	Rex	NADH	Energy metabolism	18	7
TF	UxuR		Glucuronate utilization	5	8
TF	YhcF		Multidrug resistance; Multidrug efflux	2	1
RNA	FMN	Flavin mononucleotide	Riboflavin biosynthesis	1	1
RNA	TPP	Thiamine pyrophosphate	Thiamine biosynthesis	3	3

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --