Regulon of PdxR in Ruminococcus gnavus ATCC 29149
| Regulator type: | Transcription factor |
| TF locus tag: | RUMGNA_00641 |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Regulog: | PdxR - Clostridia-3 |
| Statistics of regulated genes: | |
| - Genes | 3 |
| - Operons | 2 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Locus Tag | Name | Function | |
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Position: -101
Score: 11.5 Sequence: AACTGGCAT-(15)-AACTGGATG-(8)-AAGCCAATC
Locus tag: RUMGNA_01775
Name: pdxS Funciton: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Locus tag: RUMGNA_01774
Name: pdxT Funciton: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
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pdxS
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Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
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pdxT
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Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
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Position: -75
Score: 10.9 Sequence: AACTGGACT-(15)-AACTGGACA-(8)-TATCCACTT
Locus tag: RUMGNA_02238
Name: pdxU Funciton: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
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pdxU
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Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |