Regulog PdxR - Clostridia-3
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-3
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Bacteroides pectinophilus ATCC 43243 | 1 | 1 |
| Blautia hansenii DSM 20583 | 1 | 1 |
| Bryantella formatexigens DSM 14469 | 1 | 1 |
| Clostridiales bacterium 1_7_47_FAA | 3 | 2 |
| Clostridium bolteae ATCC BAA-613 | 3 | 2 |
| Clostridium nexile DSM 1787 | 2 | 1 |
| Clostridium scindens ATCC 35704 | 3 | 2 |
| Dorea formicigenerans ATCC 27755 | 2 | 1 |
| Dorea longicatena DSM 13814 | 4 | 3 |
| Eubacterium eligens ATCC 27750 | 2 | 1 |
| Eubacterium rectale ATCC 33656 | 1 | 1 |
| Roseburia intestinalis L1-82 | 3 | 1 |
| Ruminococcus gnavus ATCC 29149 | 3 | 2 |
| Ruminococcus lactaris ATCC 29176 | 3 | 2 |
| Genes | Function | ||||||||||||||
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| CRON 1. | |||||||||||||||
| ROSINTL182_03667 |
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Roseburia intestinalis L1-82 Site: position = -7 score = 11.9189 sequence = AACTGGCAT-(15)-AACTGGATG-(8)-CATCCAGTT Gene: ROSINTL182_03667: hypothetical protein |
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hypothetical protein |
| pdxS |
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Dorea formicigenerans ATCC 27755 Site: position = -141 score = 12.2906 sequence = AACTGGCTT-(15)-AACTGGATA-(8)-ATACCAGTT Gene: DORFOR_02364: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
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Dorea longicatena DSM 13814 Site: position = -56 score = 12.0638 sequence = AACTGGTAT-(15)-AACTGGATG-(8)-ATACCAGAT Gene: DORLON_00259: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
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Eubacterium eligens ATCC 27750 Site: position = -106 score = 12.0483 sequence = TTCTGGCAT-(15)-AATTGGATA-(8)-TGACCAGTT Gene: EUBELI_20439: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: EUBREC_2951: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: ROSINTL182_03666: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
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Ruminococcus gnavus ATCC 29149 Site: position = -101 score = 11.5154 sequence = AACTGGCAT-(15)-AACTGGATG-(8)-AAGCCAATC Gene: RUMGNA_01775: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
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Ruminococcus lactaris ATCC 29176 Site: position = -132 score = 10.3666 sequence = TTCTGACCT-(15)-AATTGAATA-(8)-TAGTCACAA Gene: RUMLAC_01874: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
| pdxT |
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Gene: DORFOR_02363: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: DORLON_00260: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: EUBELI_20440: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: EUBREC_2952: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: ROSINTL182_03665: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: RUMGNA_01774: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: RUMLAC_01875: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
| CRON 2. | |||||||||||||||
| pdxK |
Gene: BACPEC_02722: Pyridoxal kinase (EC 2.7.1.35) |
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Gene: BRYFOR_04365: Pyridoxal kinase (EC 2.7.1.35) |
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Clostridiales bacterium 1_7_47_FAA Gene: Cbac1_010100014735: Pyridoxal kinase (EC 2.7.1.35) Gene: Cbac1_010100001360: Pyridoxal kinase (EC 2.7.1.35) |
Gene: CLOBOL_04693: Pyridoxal kinase (EC 2.7.1.35) |
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Clostridium nexile DSM 1787 Gene: CLONEX_00361: Pyridoxal kinase (EC 2.7.1.35) Gene: CLONEX_01624: Pyridoxal kinase (EC 2.7.1.35) |
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Clostridium scindens ATCC 35704 Site: position = -199 score = 10.1202 sequence = AACTGGCCT-(15)-ATCTGGACT-(8)-CATCCACTT Gene: CLOSCI_00017: Pyridoxal kinase (EC 2.7.1.35) |
Gene: DORFOR_02568: Pyridoxal kinase (EC 2.7.1.35) |
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Dorea longicatena DSM 13814 Gene: DORLON_00568: Pyridoxal kinase (EC 2.7.1.35) Gene: DORLON_02260: Pyridoxal kinase (EC 2.7.1.35) |
Gene: EUBELI_01355: Pyridoxal kinase (EC 2.7.1.35) |
Gene: EUBREC_0323: Pyridoxal kinase (EC 2.7.1.35) |
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Gene: RUMGNA_03080: Pyridoxal kinase (EC 2.7.1.35) |
Gene: RUMLAC_00794: Pyridoxal kinase (EC 2.7.1.35) |
Pyridoxal kinase (EC 2.7.1.35) |
| pdxU |
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Bacteroides pectinophilus ATCC 43243 Site: position = -60 score = 9.34414 sequence = ATCTGGTAT-(15)-AACTGGCAT-(8)-TTGCCACAT Gene: BACPEC_01644: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
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Blautia hansenii DSM 20583 Site: position = -97 score = 10.9124 sequence = AACTGGACT-(15)-AACTGGCTA-(8)-TAGCCAGTT Gene: BLAHAN_01809: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
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Bryantella formatexigens DSM 14469 Site: position = -125 score = 10.0426 sequence = AACTGGACT-(15)-AACTGGACA-(8)-TATCCGGAT Gene: BRYFOR_03586: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
*2
Clostridiales bacterium 1_7_47_FAA Site: position = -133 score = 10.3039 sequence = AACTGGACT-(15)-AACTGGATA-(8)-ACTCCACTC Gene: Cbac1_010100001365: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter Site: position = -182 score = 10.4653 sequence = AAGTGGACT-(15)-AACTGGATA-(8)-AGTCCACTT Gene: Cbac1_010100020035: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
*2
Clostridium bolteae ATCC BAA-613 Site: position = -124 score = 11.384 sequence = AACTGGACT-(15)-AACTGGATA-(8)-ATTCCACTT Gene: CLOBOL_04694: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter Site: position = -104 score = 10.4081 sequence = ATCTGGACT-(15)-AACTGGATA-(8)-AGTCCACCT Gene: CLOBOL_05306: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
*2
Clostridium nexile DSM 1787 Site: position = -97 score = 9.37632 sequence = AACTGGACT-(15)-AACTGGTAT-(8)-ATACCAGAA Gene: CLONEX_02290: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter Gene: CLONEX_02289: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
*2
Clostridium scindens ATCC 35704 Site: position = -95 score = 10.8696 sequence = AACTGGACT-(15)-AACTGGACA-(8)-TGACCACTT Gene: CLOSCI_02639: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter Gene: CLOSCI_00016: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
Gene: DORFOR_03143: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
*2
Dorea longicatena DSM 13814 Site: position = -142 score = 10.8121 sequence = AACTGGCCT-(15)-AACTGGCTG-(8)-CATCCACTT Gene: DORLON_01651: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter Site: position = -63 score = 10.2113 sequence = AACTGGTAT-(15)-AACTGGCTC-(8)-ATGCCACTA Gene: DORLON_00405: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
Gene: EUBELI_01125: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
*2
Eubacterium rectale ATCC 33656 Site: position = -170 score = 10.5529 sequence = AACTGGATA-(15)-AATTGGATA-(8)-ATGCCACAT Gene: EUBREC_0262: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter Gene: EUBREC_0322: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
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Ruminococcus gnavus ATCC 29149 Site: position = -75 score = 10.8696 sequence = AACTGGACT-(15)-AACTGGACA-(8)-TATCCACTT Gene: RUMGNA_02238: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
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Ruminococcus lactaris ATCC 29176 Site: position = -93 score = 8.79778 sequence = ATCTGACCT-(15)-AATTGACCA-(8)-GGTTCACAT Gene: RUMLAC_01106: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |