Regulog YtrA - Bacillales

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	Ramoplanin resistance
Effector:	Ramoplanin
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Bacillales
By TF family - GntR/Others
By effector - Ramoplanin
By pathway - Ramoplanin resistance

Statistics of regulated genes
Genome	Genes	Operons
Bacillus subtilis subsp. subtilis str. 168	9	2
Bacillus amyloliquefaciens FZB42	7	1
Bacillus pumilus SAFR-032	5	1
Bacillus licheniformis DSM 13	5	1
Anoxybacillus flavithermus WK1	3	1
Geobacillus kaustophilus HTA426	3	1
Bacillus cereus ATCC 14579	4	1
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
ytrA	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -244 score = 6.47264 sequence = TGTACTAATTGAAGTAATACA Gene: BSU30460: Transcriptional regulator, GntR family	* Bacillus amyloliquefaciens FZB42 Site: position = -238 score = 6.72078 sequence = TGTACTACTTGATGTAATACA Gene: RBAM_027400: Transcriptional regulator, GntR family	* Bacillus pumilus SAFR-032 Site: position = -234 score = 6.42666 sequence = TGTACTACATCAACTAATACA Gene: BPUM_2677: Transcriptional regulator, GntR family	* Bacillus licheniformis DSM 13 Site: position = -223 score = 6.39037 sequence = TGTACTACATCGAGTAATACA Gene: BLi03185: Transcriptional regulator, GntR family	* Anoxybacillus flavithermus WK1 Site: position = -60 score = 6.09431 sequence = CGTATTATTTAATATAATACA Gene: Aflv_1397: Transcriptional regulator, GntR family	* Geobacillus kaustophilus HTA426 Site: position = -49 score = 5.85254 sequence = TGTACTATTAGTTATAGTACG Gene: GK1620: Transcriptional regulator, GntR family	* Bacillus cereus ATCC 14579 Site: position = -46 score = 6.39889 sequence = TGTATTACATATAGTAGTACA Gene: BC4076: Transcriptional regulator, GntR family	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Transcriptional regulator, GntR family
ytrB	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30450: ABC-type multidrug transport system, ATPase component	Bacillus amyloliquefaciens FZB42 Gene: RBAM_027390: ABC-type multidrug transport system, ATPase component	Bacillus pumilus SAFR-032 Gene: BPUM_2676: ABC-type multidrug transport system, ATPase component	Bacillus licheniformis DSM 13 Gene: BLi03184: ABC-type multidrug transport system, ATPase component	Anoxybacillus flavithermus WK1 Gene: Aflv_1398: ABC-type multidrug transport system, ATPase component	Geobacillus kaustophilus HTA426 Gene: GK1621: ABC-type multidrug transport system, ATPase component	Bacillus cereus ATCC 14579 Gene: BC4077: ABC-type multidrug transport system, ATPase component	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	ABC-type multidrug transport system, ATPase component
ytrC	2 Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30440: ABC-type multidrug transport system, permease component Gene: BSU30430: ABC-type multidrug transport system, permease component	3 Bacillus amyloliquefaciens FZB42 Gene: RBAM_027380: ABC-type multidrug transport system, permease component Gene: RBAM_027370: ABC-type multidrug transport system, permease component Gene: RBAM_027360: ABC-type multidrug transport system, permease component	Bacillus pumilus SAFR-032 Gene: BPUM_2675: ABC-type multidrug transport system, permease component	Bacillus licheniformis DSM 13 Gene: BLi03183: ABC-type multidrug transport system, permease component	Anoxybacillus flavithermus WK1 Gene: Aflv_1399: ABC-type multidrug transport system, permease component	Geobacillus kaustophilus HTA426 Gene: GK1622: ABC-type multidrug transport system, permease component	2 Bacillus cereus ATCC 14579 Gene: BC4079: ABC-type multidrug transport system, permease component Gene: BC4078: ABC-type multidrug transport system, permease component	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	ABC-type multidrug transport system, permease component
ytrE	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30420: ABC transporter, ATP-binding protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_027350: ABC transporter, ATP-binding protein	Bacillus pumilus SAFR-032 Gene: BPUM_2674: ABC transporter, ATP-binding protein	Bacillus licheniformis DSM 13 Gene: BLi03182: ABC transporter, ATP-binding protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	ABC transporter, ATP-binding protein
ytrF	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU30410: ABC transporter, permease protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_027340: ABC transporter, permease protein	Bacillus pumilus SAFR-032 Gene: BPUM_2673: ABC transporter, permease protein	Bacillus licheniformis DSM 13 Gene: BLi03181: ABC transporter, permease protein	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	ABC transporter, permease protein

CRON 2.
ywoB	* Bacillus subtilis subsp. subtilis str. 168 Site: position = -34 score = 6.61195 sequence = TGTACTACATCAAATAATACA Gene: BSU36500: Putative integral inner membrane protein	Bacillus amyloliquefaciens FZB42	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Putative integral inner membrane protein
ywoC	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU36490: Nicotinamidase/isochorismatase family protein	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033670: Nicotinamidase/isochorismatase family protein	Bacillus pumilus SAFR-032	Bacillus licheniformis DSM 13	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2	Nicotinamidase/isochorismatase family protein
ywoD	Bacillus subtilis subsp. subtilis str. 168 Gene: BSU36480: drug resistance transporter, EmrB/QacA family	Bacillus amyloliquefaciens FZB42 Gene: RBAM_033660: drug resistance transporter, EmrB/QacA family	Bacillus pumilus SAFR-032 Gene: BPUM_3295: drug resistance transporter, EmrB/QacA family	Bacillus licheniformis DSM 13 Gene: BLi04075: drug resistance transporter, EmrB/QacA family	Anoxybacillus flavithermus WK1	Geobacillus kaustophilus HTA426	Bacillus cereus ATCC 14579	Bacillus halodurans C-125	Bacillus clausii KSM-K16	Oceanobacillus iheyensis HTE831	Paenibacillus sp. JDR-2 Gene: Pjdr2_3092: drug resistance transporter, EmrB/QacA family	drug resistance transporter, EmrB/QacA family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog YtrA - Bacillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --