Regulog RbkR - Thermococcales
| Regulator type: | Transcription factor |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Euryarchaeota |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermococcales
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pyrococcus abyssi GE5 | 1 | 1 |
| Pyrococcus furiosus DSM 3638 | 5 | 2 |
| Pyrococcus horikoshii OT3 | 1 | 1 |
| Thermococcus gammatolerans EJ3 | 4 | 1 |
| Thermococcus kodakaraensis KOD1 | 5 | 3 |
| Thermococcus onnurineus NA1 | 5 | 2 |
| Thermococcus sibiricus MM 739 | 1 | 1 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| ribBA |
|
*
Pyrococcus furiosus DSM 3638 Site: position = -23 score = 4.56364 sequence = TAGTTCTATACTTGAGACAT Site: position = -56 score = 4.92515 sequence = CTGTCTTATTTTTGGAACAC Gene: PF0064: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
Gene: TGAM_1256: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
*
Thermococcus kodakaraensis KOD1 Site: position = -62 score = 5.81594 sequence = TGATTCCATTTTTGGAACAA Site: position = -40 score = 4.56159 sequence = TTTTTAAAAATTTAGAACAT Gene: TK0428: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: TON_0608: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
|
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
|
Gene: PF0063: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
Gene: TGAM_1257: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: TK0429: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: TON_0607: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
| ribD |
|
Gene: PF0062: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
*
Thermococcus gammatolerans EJ3 Site: position = 92 score = 6.00711 sequence = ATGTTCCAAAAACGGAACAA Gene: TGAM_1254: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Thermococcus kodakaraensis KOD1 Site: position = -52 score = 5.98256 sequence = TTGTTCCAACCTTGGAACAA Gene: TK0424: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Thermococcus onnurineus NA1 Site: position = -53 score = 6.34218 sequence = TTATTCCAATTTTGGAACAA Gene: TON_0610: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
|
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
|
Gene: PF0061: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Gene: TGAM_1255: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: TK0425: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: TON_0609: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| CRON 2. | ||||||||
| ribU |
*
Pyrococcus abyssi GE5 Site: position = -62 score = 5.50143 sequence = TCGTTCAAAATTTGGAACAT Gene: PAB2198: Substrate-specific component RibU of riboflavin ECF transporter |
*
Pyrococcus furiosus DSM 3638 Site: position = 133 score = 6.06914 sequence = TTGTTCTGAAAATGGAACAA Gene: PF0163: Substrate-specific component RibU of riboflavin ECF transporter |
*
Pyrococcus horikoshii OT3 Site: position = -62 score = 6.16034 sequence = TTGTTCCAATTATAGAACAT Gene: PH0251: Substrate-specific component RibU of riboflavin ECF transporter |
|
*
Thermococcus kodakaraensis KOD1 Site: position = -62 score = 6.1196 sequence = TTGTTCTATGTATGGAACAA Gene: TK2194: Substrate-specific component RibU of riboflavin ECF transporter |
*
Thermococcus onnurineus NA1 Site: position = -62 score = 5.60532 sequence = GTGTTTCATATTGGGAACAA Gene: TON_1440: Substrate-specific component RibU of riboflavin ECF transporter |
*
Thermococcus sibiricus MM 739 Site: position = -61 score = 6.03545 sequence = ATATTCCAATTATGGAACAA Gene: TSIB_0195: Substrate-specific component RibU of riboflavin ECF transporter |
Substrate-specific component RibU of riboflavin ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |