Regulon of RbkR in Pyrococcus furiosus DSM 3638
| Regulator type: | Transcription factor |
| TF locus tag: | PF0988 |
| Regulator family: | [Other] |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Regulog: | RbkR - Thermococcales |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 2 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Thermococcales
- By trascription factor - RbkR
- By TF family - [Other]
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -56
Score: 4.9 Sequence: CTGTCTTATTTTTGGAACAC
Position: -23
Score: 4.6 Sequence: TAGTTCTATACTTGAGACAT
Locus tag: PF0064
Name: ribBA Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
Locus tag: PF0063
Name: ribH Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
Locus tag: PF0062
Name: ribD Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
Locus tag: PF0061
Name: ribE Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9) |
|||
|
ribBA
|
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
|
||
|
ribH
|
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
|
||
|
ribD
|
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
|
||
|
ribE
|
Riboflavin synthase alpha chain (EC 2.5.1.9)
|
||
|
Position: 133
Score: 6.1 Sequence: TTGTTCTGAAAATGGAACAA
Locus tag: PF0163
Name: ribU Funciton: Substrate-specific component RibU of riboflavin ECF transporter |
|||
|
ribU
|
Substrate-specific component RibU of riboflavin ECF transporter
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |