Regulon of RbkR in Thermococcus kodakaraensis KOD1

Properties
Regulator type:	Transcription factor
TF locus tag:	TK1272
Regulator family:	[Other]
Regulation mode:
Biological process:	Riboflavin biosynthesis
Effector:	Flavin mononucleotide
Regulog:	RbkR - Thermococcales
Statistics of regulated genes:
- Genes	5
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By taxonomy - Thermococcales
By trascription factor - RbkR
By TF family - [Other]
By effector - Flavin mononucleotide
By pathway - Riboflavin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -62 Score: 6.1 Sequence: TTGTTCTATGTATGGAACAA Locus tag: TK2194 Name: ribU Funciton: Substrate-specific component RibU of riboflavin ECF transporter
	TK2194	ribU	Substrate-specific component RibU of riboflavin ECF transporter
Position: -52 Score: 6 Sequence: TTGTTCCAACCTTGGAACAA Locus tag: TK0424 Name: ribD Funciton: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) Locus tag: TK0425 Name: ribE Funciton: Riboflavin synthase alpha chain (EC 2.5.1.9)
	TK0424	ribD	Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
	TK0425	ribE	Riboflavin synthase alpha chain (EC 2.5.1.9)
Position: -62 Score: 5.8 Sequence: TGATTCCATTTTTGGAACAA Position: -40 Score: 4.6 Sequence: TTTTTAAAAATTTAGAACAT Locus tag: TK0428 Name: ribBA Funciton: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) Locus tag: TK0429 Name: ribH Funciton: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
	TK0428	ribBA	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25)
	TK0429	ribH	6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD