Regulog FnrN - Rhodospirillales

Properties
Regulator type:	Transcription factor
Regulator family:	CRP
Regulation mode:	activator (repressor)
Biological process:	Oxidative stress response; Nitrogen fixation
Effector:	Oxygen
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 18 sites [see more]

Member of regulog collections

By taxonomy - Rhodospirillales
By trascription factor - FnrN/FixK
By TF family - CRP
By effector - Oxygen
By pathway - Oxidative stress response
By pathway - Nitrogen fixation

Statistics of regulated genes
Genome	Genes	Operons
Acetobacter pasteurianus IFO 3283-01	3	2
Azospirillum sp. B510	5	2
Gluconacetobacter diazotrophicus PAl 5	3	2
Gluconobacter oxydans 621H	2	2
Granulibacter bethesdensis CGDNIH1
Magnetospirillum magneticum AMB-1	1	1
Magnetospirillum magnetotacticum MS-1	4	2
Rhodospirillum centenum SW	7	4
Rhodospirillum rubrum ATCC 11170	3	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
ompW	* Acetobacter pasteurianus IFO 3283-01 Site: position = -90 score = 6.00186 sequence = GATTTGATCTAAATCAAGGC Gene: APA01_25640: Outer membrane protein W precursor	Azospirillum sp. B510 Gene: AZL_c00520: Outer membrane protein W precursor	* Gluconacetobacter diazotrophicus PAl 5 Site: position = -94 score = 4.83373 sequence = CGGTTGATTCATGTCAAGGC Gene: Gdia_1985: Outer membrane protein W precursor	* Gluconobacter oxydans 621H Site: position = -75 score = 5.41318 sequence = GACTTGATTCAGGTCAACGT Gene: GOX0973: Outer membrane protein W precursor	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	* Rhodospirillum centenum SW Site: position = -121 score = 5.50714 sequence = GAATTGATCCAGGTCAGGGC Gene: RC1_1607: Outer membrane protein W precursor	Rhodospirillum rubrum ATCC 11170	Outer membrane protein W precursor
hemN	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_25630: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_1986: Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22)

CRON 2.
ccoN	Acetobacter pasteurianus IFO 3283-01	* Azospirillum sp. B510 Site: position = -192 score = 5.08125 sequence = TCGTTGACGTAGATCAATGT Gene: AZL_003350: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1	* Magnetospirillum magnetotacticum MS-1 Site: position = -161 score = 4.97722 sequence = ACTTTGATATATGTCAATGG Gene: Magn03010411: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	* Rhodospirillum centenum SW Site: position = -190 score = 4.90273 sequence = GCATTGACATTCGTCAAAAC Site: position = -120 score = 5.43259 sequence = CCGTTGATTCAAATCAATGC Gene: RC1_1280: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	* Rhodospirillum rubrum ATCC 11170 Site: position = -324 score = 5.69943 sequence = GATTTGATCTAAATCAATGG Gene: Rru_A3332: Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)	Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
ccoO	Acetobacter pasteurianus IFO 3283-01	Azospirillum sp. B510 Gene: AZL_003360: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1 Gene: amb4363: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Magnetospirillum magnetotacticum MS-1 Gene: Magn03010410: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Rhodospirillum centenum SW Gene: RC1_1279: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A3331: Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)	Cytochrome c oxidase subunit CcoO (EC 1.9.3.1)
ccoQ	Acetobacter pasteurianus IFO 3283-01	Azospirillum sp. B510 Gene: AZL_003370: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1 Gene: amb4364: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Magnetospirillum magnetotacticum MS-1	Rhodospirillum centenum SW Gene: RC1_1278: Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)	Rhodospirillum rubrum ATCC 11170	Cytochrome c oxidase subunit CcoQ (EC 1.9.3.1)
ccoP	Acetobacter pasteurianus IFO 3283-01	Azospirillum sp. B510 Gene: AZL_003380: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1 Gene: amb4365: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Magnetospirillum magnetotacticum MS-1 Gene: Magn03010409: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Rhodospirillum centenum SW Gene: RC1_1277: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A3330: Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)	Cytochrome c oxidase subunit CcoP (EC 1.9.3.1)

CRON 3.
cycA	Acetobacter pasteurianus IFO 3283-01	Azospirillum sp. B510	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	* Magnetospirillum magneticum AMB-1 Site: position = -78 score = 5.88746 sequence = GACTTGACCTTGCTCAATGC Gene: amb0883: Cytochrome c4 precursor	* Magnetospirillum magnetotacticum MS-1 Site: position = -77 score = 5.88746 sequence = GACTTGACCTTGCTCAATGC Gene: Magn03010752: Cytochrome c4 precursor	Rhodospirillum centenum SW	Rhodospirillum rubrum ATCC 11170	Cytochrome c4 precursor

CRON 4.
hemA	Acetobacter pasteurianus IFO 3283-01	* Azospirillum sp. B510 Site: position = -138 score = 5.50372 sequence = GGCTTGATTTCGATCAATGC Gene: AZL_003210: 5-aminolevulinate synthase (EC 2.3.1.37)	Gluconacetobacter diazotrophicus PAl 5	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1 Gene: amb1683: 5-aminolevulinate synthase (EC 2.3.1.37)	Magnetospirillum magnetotacticum MS-1 Gene: Magn03010319: 5-aminolevulinate synthase (EC 2.3.1.37)	* Rhodospirillum centenum SW Site: position = -164 score = 5.44628 sequence = GAATTGACCGACATCAACGC Gene: RC1_0996: 5-aminolevulinate synthase (EC 2.3.1.37)	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A2508: 5-aminolevulinate synthase (EC 2.3.1.37)	5-aminolevulinate synthase (EC 2.3.1.37)

CRON 5.
fnrN	* Acetobacter pasteurianus IFO 3283-01 Site: position = -207 score = 6.00186 sequence = GCCTTGATTTAGATCAAATC Gene: APA01_25650: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	Azospirillum sp. B510 Gene: AZL_003420: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	* Gluconacetobacter diazotrophicus PAl 5 Site: position = -126 score = 5.98814 sequence = GCATTGATTCAGATCAATTC Gene: Gdia_1984: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	* Gluconobacter oxydans 621H Site: position = -90 score = 5.41318 sequence = ACGTTGACCTGAATCAAGTC Gene: GOX0974: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	Granulibacter bethesdensis CGDNIH1	Magnetospirillum magneticum AMB-1 Gene: amb4369: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	Magnetospirillum magnetotacticum MS-1 Gene: Magn03010404: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	* Rhodospirillum centenum SW Site: position = -305 score = 5.17043 sequence = ACCTTGACTTGGATCAAGAC Gene: RC1_2984: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	* Rhodospirillum rubrum ATCC 11170 Site: position = -119 score = 4.62425 sequence = GGTTTGACCTGGATCAAAAT Gene: Rru_A3322: Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family	Nitrogen fixation and oxygen response transcriptional regulator FnrN, Crp family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FnrN - Rhodospirillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --