Regulog LexA - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Nocardiaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | 10 | 6 |
| Rhodococcus erythropolis PR4 | 11 | 8 |
| Rhodococcus opacus B4 | 11 | 7 |
| Rhodococcus sp. RHA1 | 11 | 7 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| lexA |
*2
Nocardia farcinica IFM 10152 Site: position = -159 score = 5.51183 sequence = TCGATCACATGTTCGA Site: position = -78 score = 5.62069 sequence = TCGAACAGATGTTTGA Gene: nfa38000: SOS-response repressor and protease LexA (EC 3.4.21.88) Gene: nfa52180: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*2
Rhodococcus erythropolis PR4 Site: position = -202 score = 5.62069 sequence = TCGAACAGATGTTTGA Gene: RER_27760: SOS-response repressor and protease LexA (EC 3.4.21.88) Gene: RER_53970: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*2
Rhodococcus opacus B4 Site: position = -192 score = 5.23642 sequence = TCGATCACCCGTTCGA Site: position = -176 score = 5.10797 sequence = AAGAACACATGTTCGA Site: position = -113 score = 5.62069 sequence = TCGAACAGATGTTTGA Gene: ROP_67740: SOS-response repressor and protease LexA (EC 3.4.21.88) Gene: ROP_31520: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*2
Rhodococcus sp. RHA1 Site: position = -192 score = 5.17239 sequence = TCGATCACGCGTTCGA Site: position = -176 score = 5.10797 sequence = AAGAACACATGTTCGA Site: position = -113 score = 5.62069 sequence = TCGAACAGATGTTTGA Gene: RHA1_ro06788: SOS-response repressor and protease LexA (EC 3.4.21.88) Gene: RHA1_ro00572: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 2. | |||||
| nfa9140 |
*
Nocardia farcinica IFM 10152 Site: position = -21 score = 5.45255 sequence = TCGAACATATGTGCGA Gene: nfa9140: Hypothetical protein |
|
|
|
Hypothetical protein |
| dnaE2 |
Gene: nfa9150: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Rhodococcus erythropolis PR4 Site: position = -99 score = 5.61105 sequence = TCGAACATCAGTTCGA Gene: RER_19790: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Rhodococcus opacus B4 Site: position = -90 score = 5.2716 sequence = TCGAACGCCAGTTCGA Gene: ROP_62860: DNA polymerase III alpha subunit (EC 2.7.7.7) |
*
Rhodococcus sp. RHA1 Site: position = -89 score = 5.2716 sequence = TCGAACTCCCGTTCGA Gene: RHA1_ro06227: DNA polymerase III alpha subunit (EC 2.7.7.7) |
DNA polymerase III alpha subunit (EC 2.7.7.7) |
| CRON 3. | |||||
| ruvC |
*
Nocardia farcinica IFM 10152 Site: position = -35 score = 5.32353 sequence = TCGAACAGTTGTTCGT Gene: nfa36970: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Rhodococcus erythropolis PR4 Site: position = -35 score = 5.60054 sequence = TCGAACAGCTGTTCGG Gene: RER_29230: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Rhodococcus opacus B4 Site: position = -36 score = 5.60054 sequence = TCGAACAGCTGTTCGG Gene: ROP_68710: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Rhodococcus sp. RHA1 Site: position = -36 score = 5.60054 sequence = TCGAACAGCTGTTCGG Gene: RHA1_ro06892: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
| ruvA |
Gene: nfa36960: Holliday junction DNA helicase RuvA |
Gene: RER_29240: Holliday junction DNA helicase RuvA |
Gene: ROP_68720: Holliday junction DNA helicase RuvA |
Gene: RHA1_ro06893: Holliday junction DNA helicase RuvA |
Holliday junction DNA helicase RuvA |
| ruvB |
Gene: nfa36950: Holliday junction DNA helicase RuvB |
Gene: RER_29250: Holliday junction DNA helicase RuvB |
Gene: ROP_68730: Holliday junction DNA helicase RuvB |
Gene: RHA1_ro06894: Holliday junction DNA helicase RuvB |
Holliday junction DNA helicase RuvB |
| CRON 4. | |||||
| nfa9050 |
*
Nocardia farcinica IFM 10152 Site: position = -79 score = 5.05958 sequence = TCGAACGTATATTCGA Gene: nfa9050: Recombinase-like hypothetical protein |
*2
Rhodococcus erythropolis PR4 Site: position = -24 score = 5.29677 sequence = TCGAACCTGTGTTCGA Gene: pREL1_0107: Recombinase-like hypothetical protein Site: position = -57 score = 5.45255 sequence = TCGAACATATGTGCGA Gene: pREC1_0098: Recombinase-like hypothetical protein |
*
Rhodococcus opacus B4 Site: position = -100 score = 5.05958 sequence = TCGAAAATACGTTCGA Gene: ROP_62720: Recombinase-like hypothetical protein |
*
Rhodococcus sp. RHA1 Site: position = -64 score = 5.05958 sequence = TCGAAAATACGTTCGA Gene: RHA1_ro06212: Recombinase-like hypothetical protein |
Recombinase-like hypothetical protein |
| COG0389 |
Gene: nfa9060: DNA polymerase-like protein PA0670 |
|
Gene: ROP_62730: DNA polymerase-like protein PA0670 |
Gene: RHA1_ro06213: DNA polymerase-like protein PA0670 |
DNA polymerase-like protein PA0670 |
| CRON 5. | |||||
| dinB |
*
Nocardia farcinica IFM 10152 Site: position = -8 score = 5.18358 sequence = GCGAACATGTGTTCGT Gene: nfa26700: DNA polymerase IV (EC 2.7.7.7) |
*
Rhodococcus erythropolis PR4 Site: position = -8 score = 4.87151 sequence = GGGAACATATGTTCGT Gene: RER_37190: DNA polymerase IV (EC 2.7.7.7) |
*
Rhodococcus opacus B4 Site: position = -14 score = 5.25813 sequence = GCGAACATATGTTCGT Gene: ROP_10970: DNA polymerase IV (EC 2.7.7.7) |
*
Rhodococcus sp. RHA1 Site: position = -8 score = 5.25813 sequence = GCGAACATATGTTCGT Gene: RHA1_ro01383: DNA polymerase IV (EC 2.7.7.7) |
DNA polymerase IV (EC 2.7.7.7) |
| CRON 6. | |||||
| recA |
*
Nocardia farcinica IFM 10152 Site: position = -108 score = 5.48407 sequence = TCGAACACCTGTTCGT Gene: nfa38430: Recombinase A |
*
Rhodococcus erythropolis PR4 Site: position = -254 score = 5.42004 sequence = TCGAACACGTGTTCGT Gene: RER_27530: Recombinase A |
*
Rhodococcus opacus B4 Site: position = -110 score = 4.9979 sequence = TCGAACACACGTTCCC Gene: ROP_67510: Recombinase A |
*
Rhodococcus sp. RHA1 Site: position = -111 score = 4.9979 sequence = TCGAACACACGTTCCC Gene: RHA1_ro06765: Recombinase A |
Recombinase A |
| recX |
Gene: nfa38410: Regulatory protein RecX |
Gene: RER_27540: Regulatory protein RecX |
Gene: ROP_67520: Regulatory protein RecX |
Gene: RHA1_ro06766: Regulatory protein RecX |
Regulatory protein RecX |
| CRON 7. | |||||
| alkB |
Gene: nfa36260: DNA repair system specific for alkylated DNA |
*
Rhodococcus erythropolis PR4 Site: position = -28 score = 5.33734 sequence = GGGAACATATGTTCGA Gene: RER_46860: DNA repair system specific for alkylated DNA |
*
Rhodococcus opacus B4 Site: position = -37 score = 5.07244 sequence = GGGAACATACGTTCGA Gene: ROP_49990: DNA repair system specific for alkylated DNA |
*
Rhodococcus sp. RHA1 Site: position = -36 score = 4.78141 sequence = GTGAACATACGTTCGA Gene: RHA1_ro04932: DNA repair system specific for alkylated DNA |
DNA repair system specific for alkylated DNA |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |