Regulon of LexA in Nocardia farcinica IFM 10152

Properties
Regulator type:	Transcription factor
TF locus tag:	nfa38000, nfa52180
Regulator family:	LexA
Regulation mode:	repressor
Biological process:	SOS response
Effector:	DNA damage
Regulog:	LexA - Nocardiaceae
Statistics of regulated genes:
- Genes	10
- Operons	6
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 33 sites [see more]

Member of regulog collections

By trascription factor - LexA
By taxonomy - Nocardiaceae
By TF family - LexA
By effector - DNA damage
By pathway - SOS response

Regulated operons
	Locus Tag	Name	Function
Position: -35 Score: 5.3 Sequence: TCGAACAGTTGTTCGT Locus tag: nfa36970 Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Locus tag: nfa36960 Name: ruvA Funciton: Holliday junction DNA helicase RuvA Locus tag: nfa36950 Name: ruvB Funciton: Holliday junction DNA helicase RuvB
	nfa36970	ruvC	Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
	nfa36960	ruvA	Holliday junction DNA helicase RuvA
	nfa36950	ruvB	Holliday junction DNA helicase RuvB
Position: -21 Score: 5.5 Sequence: TCGAACATATGTGCGA Locus tag: nfa9140 Name: nfa9140 Funciton: Hypothetical protein Locus tag: nfa9150 Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
	nfa9140	nfa9140	Hypothetical protein
	nfa9150	dnaE2	DNA polymerase III alpha subunit (EC 2.7.7.7)
Position: -79 Score: 5.1 Sequence: TCGAACGTATATTCGA Locus tag: nfa9050 Name: nfa9050 Funciton: Recombinase-like hypothetical protein Locus tag: nfa9060 Name: COG0389 Funciton: DNA polymerase-like protein PA0670
	nfa9050	nfa9050	Recombinase-like hypothetical protein
	nfa9060	COG0389	DNA polymerase-like protein PA0670
Position: -108 Score: 5.5 Sequence: TCGAACACCTGTTCGT Locus tag: nfa38430 Name: recA Funciton: Recombinase A
	nfa38430	recA	Recombinase A
Position: -8 Score: 5.2 Sequence: GCGAACATGTGTTCGT Locus tag: nfa26700 Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7)
	nfa26700	dinB	DNA polymerase IV (EC 2.7.7.7)
Position: -159 Score: 5.5 Sequence: TCGATCACATGTTCGA Position: -78 Score: 5.6 Sequence: TCGAACAGATGTTTGA Locus tag: nfa38000 Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
	nfa38000	lexA	SOS-response repressor and protease LexA (EC 3.4.21.88)

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD