Regulon of LexA in Nocardia farcinica IFM 10152
| Regulator type: | Transcription factor |
| TF locus tag: | nfa38000, nfa52180 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Nocardiaceae |
| Statistics of regulated genes: | |
| - Genes | 10 |
| - Operons | 6 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - LexA
- By taxonomy - Nocardiaceae
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -35
Score: 5.3 Sequence: TCGAACAGTTGTTCGT
Locus tag: nfa36970
Name: ruvC Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: nfa36960
Name: ruvA Funciton: Holliday junction DNA helicase RuvA
Locus tag: nfa36950
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvC
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Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
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ruvA
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Holliday junction DNA helicase RuvA
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -21
Score: 5.5 Sequence: TCGAACATATGTGCGA
Locus tag: nfa9140
Name: nfa9140 Funciton: Hypothetical protein
Locus tag: nfa9150
Name: dnaE2 Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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nfa9140
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Hypothetical protein
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dnaE2
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -79
Score: 5.1 Sequence: TCGAACGTATATTCGA
Locus tag: nfa9050
Name: nfa9050 Funciton: Recombinase-like hypothetical protein
Locus tag: nfa9060
Name: COG0389 Funciton: DNA polymerase-like protein PA0670 |
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nfa9050
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Recombinase-like hypothetical protein
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COG0389
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DNA polymerase-like protein PA0670
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Position: -108
Score: 5.5 Sequence: TCGAACACCTGTTCGT
Locus tag: nfa38430
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -8
Score: 5.2 Sequence: GCGAACATGTGTTCGT
Locus tag: nfa26700
Name: dinB Funciton: DNA polymerase IV (EC 2.7.7.7) |
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dinB
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DNA polymerase IV (EC 2.7.7.7)
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Position: -159
Score: 5.5 Sequence: TCGATCACATGTTCGA
Position: -78
Score: 5.6 Sequence: TCGAACAGATGTTTGA
Locus tag: nfa38000
Name: lexA Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88) |
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lexA
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SOS-response repressor and protease LexA (EC 3.4.21.88)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |