Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Rhodococcus erythropolis PR4

Properties
Regulator type: Transcription factor
TF locus tag: RER_53970, RER_27760
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Nocardiaceae
Statistics of regulated genes:
- Genes 11
- Operons 8
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 33 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -99
Score: 5.6
Sequence: TCGAACATCAGTTCGA
Locus tag: RER_19790
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)

Position: -202
Score: 5.6
Sequence: TCGAACAGATGTTTGA
Locus tag: RER_27760
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -35
Score: 5.6
Sequence: TCGAACAGCTGTTCGG
Locus tag: RER_29230
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: RER_29240
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: RER_29250
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB

Position: -57
Score: 5.5
Sequence: TCGAACATATGTGCGA
Locus tag: pREC1_0098
Name: nfa9050
Funciton: Recombinase-like hypothetical protein
nfa9050
Recombinase-like hypothetical protein

Position: -24
Score: 5.3
Sequence: TCGAACCTGTGTTCGA
Locus tag: pREL1_0107
Name: nfa9050
Funciton: Recombinase-like hypothetical protein
nfa9050
Recombinase-like hypothetical protein

Position: -254
Score: 5.4
Sequence: TCGAACACGTGTTCGT
Locus tag: RER_27530
Name: recA
Funciton: Recombinase A
Locus tag: RER_27540
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -8
Score: 4.9
Sequence: GGGAACATATGTTCGT
Locus tag: RER_37190
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -28
Score: 5.3
Sequence: GGGAACATATGTTCGA
Locus tag: RER_46860
Name: alkB
Funciton: DNA repair system specific for alkylated DNA
alkB
DNA repair system specific for alkylated DNA
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD