Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Rhodococcus opacus B4

Properties
Regulator type: Transcription factor
TF locus tag: ROP_31520, ROP_67740
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Nocardiaceae
Statistics of regulated genes:
- Genes 11
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 33 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -37
Score: 5.1
Sequence: GGGAACATACGTTCGA
Locus tag: ROP_49990
Name: alkB
Funciton: DNA repair system specific for alkylated DNA
alkB
DNA repair system specific for alkylated DNA

Position: -36
Score: 5.6
Sequence: TCGAACAGCTGTTCGG
Locus tag: ROP_68710
Name: ruvC
Funciton: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
Locus tag: ROP_68720
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: ROP_68730
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvC
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4)
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB

Position: -192
Score: 5.2
Sequence: TCGATCACCCGTTCGA
Position: -176
Score: 5.1
Sequence: AAGAACACATGTTCGA
Position: -113
Score: 5.6
Sequence: TCGAACAGATGTTTGA
Locus tag: ROP_67740
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -110
Score: 5
Sequence: TCGAACACACGTTCCC
Locus tag: ROP_67510
Name: recA
Funciton: Recombinase A
Locus tag: ROP_67520
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -14
Score: 5.3
Sequence: GCGAACATATGTTCGT
Locus tag: ROP_10970
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -100
Score: 5.1
Sequence: TCGAAAATACGTTCGA
Locus tag: ROP_62720
Name: nfa9050
Funciton: Recombinase-like hypothetical protein
Locus tag: ROP_62730
Name: COG0389
Funciton: DNA polymerase-like protein PA0670
nfa9050
Recombinase-like hypothetical protein
COG0389
DNA polymerase-like protein PA0670

Position: -90
Score: 5.3
Sequence: TCGAACGCCAGTTCGA
Locus tag: ROP_62860
Name: dnaE2
Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7)
dnaE2
DNA polymerase III alpha subunit (EC 2.7.7.7)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD