Regulog MetR - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | LysR |
| Regulation mode: | repressor (activator) |
| Biological process: | Methionine biosynthesis |
| Effector: | Homocysteine |
| Phylum: | Proteobacteria/Gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - MetR
- By TF family - LysR
- By effector - Homocysteine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 2 | 2 |
| Marinobacter aqueolei | 2 | 2 |
| Marinobacter sp. ELB17 | 2 | 2 |
| Oceanobacter sp. RED65 | 5 | 3 |
| Oceanospirillum sp. MED92 | 3 | 2 |
| Marinomonas sp. MWYL1 | 5 | 2 |
| Saccharophagus degradans 2-40 | 2 | 2 |
| Teredinibacter turnerae T7901 | 2 | 2 |
| Cellvibrio japonicus Ueda107 | 2 | 2 |
| Chromohalobacter salexigens DSM 3043 | 3 | 3 |
| Reinekea sp. MED297 | 2 | 2 |
| Alcanivorax borkumensis SK2 | 2 | 2 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| metE |
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Hahella chejuensis KCTC 2396 Site: position = -91 score = 4.57699 sequence = ATGAATTTATTTAAT Site: position = -70 score = 4.50915 sequence = ATGAAATATTAACAT Gene: HCH_01174: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Marinobacter aqueolei Site: position = -104 score = 4.61489 sequence = GTGAATCTTTTTCAT Site: position = -83 score = 4.05719 sequence = GTGAAATAATACCAT Gene: Maqu_0809: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Marinobacter sp. ELB17 Site: position = -67 score = 4.90154 sequence = GTGAATAGAATTCAT Site: position = -46 score = 4.06 sequence = GTGAAATAATACCAT Gene: MELB17_19821: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Saccharophagus degradans 2-40 Site: position = -62 score = 4.20008 sequence = ATCAATTTTATTCAC Site: position = -93 score = 5.22028 sequence = ATGATTAAAATTCAT Gene: Sde_0638: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Teredinibacter turnerae T7901 Site: position = -81 score = 4.50915 sequence = ATGAAATAATACCAT Site: position = -102 score = 5.35351 sequence = ATGAATTGTATTCAT Gene: TERTU_4688: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Cellvibrio japonicus Ueda107 Site: position = -138 score = 4.65204 sequence = ATTAATTAAATTCAT Gene: CJA_2448: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Chromohalobacter salexigens DSM 3043 Site: position = -163 score = 4.29234 sequence = ATGAGTGCCGTTCAT Gene: Csal_0672: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Reinekea sp. MED297 Site: position = -102 score = 5.02378 sequence = ATGAATTTTACTCAT Site: position = -81 score = 4.58421 sequence = ATGAATTAATACCAT Gene: MED297_11745: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
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Alcanivorax borkumensis SK2 Site: position = -230 score = 4.39374 sequence = ATGAATGCCTTTCCT Site: position = -147 score = 4.39751 sequence = TTGAGAAAAATTCAT Gene: ABO_0861: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
| CRON 2. | |||||||||||||
| PF08908 |
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Oceanobacter sp. RED65 Site: position = -86 score = 4.19905 sequence = ATGAGATAAAATCAA Site: position = -76 score = 4.57699 sequence = ATCAATTTTTTTCAT Gene: RED65_13432: Protein of unknown function DUF1852 |
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Oceanospirillum sp. MED92 Site: position = -188 score = 4.37853 sequence = ATGAATAAATATAAT Site: position = -167 score = 4.72811 sequence = ATGAAAAGGTATCAT Gene: MED92_05643: Protein of unknown function DUF1852 |
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Marinomonas sp. MWYL1 Site: position = -169 score = 5.41874 sequence = ATGAATAATATTCAT Site: position = -149 score = 4.02578 sequence = TTAAAATAAATTCAT Gene: Mmwyl1_0387: Protein of unknown function DUF1852 |
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Protein of unknown function DUF1852 |
| metE2 |
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Gene: RED65_13427: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
Gene: MED92_05638: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
Gene: Mmwyl1_0388: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
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Chromohalobacter salexigens DSM 3043 Site: position = -41 score = 4.75254 sequence = ATGAACGTCATTCAT Gene: Csal_1563: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
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Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14) |
| CRON 3. | |||||||||||||
| metH |
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*2
Oceanobacter sp. RED65 Gene: RED65_09024: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) Site: position = -106 score = 4.40734 sequence = ATGAGTAGTATTCAA Gene: RED65_09029: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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Oceanospirillum sp. MED92 Site: position = -129 score = 4.31029 sequence = ATGACCAATTTTCAT Gene: MED92_04362: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: Mmwyl1_2169: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| CRON 4. | |||||||||||||
| glyA |
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Gene: MED92_08642: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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Marinomonas sp. MWYL1 Site: position = -95 score = 4.79334 sequence = ATGATCTTTTTTCAT Gene: Mmwyl1_2283: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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Serine hydroxymethyltransferase (EC 2.1.2.1) |
| gcvH |
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Gene: MED92_08647: Glycine cleavage system H protein |
Gene: Mmwyl1_2284: Glycine cleavage system H protein |
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Glycine cleavage system H protein |
| gcvP |
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Gene: MED92_08652: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Mmwyl1_2285: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
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Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
| CRON 5. | |||||||||||||
| metR |
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Hahella chejuensis KCTC 2396 Site: position = -47 score = 4.50915 sequence = ATGTTAATATTTCAT Site: position = -26 score = 4.57699 sequence = ATTAAATAAATTCAT Gene: HCH_01175: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Marinobacter aqueolei Site: position = -21 score = 4.05719 sequence = ATGGTATTATTTCAC Site: position = 0 score = 4.61489 sequence = ATGAAAAAGATTCAC Gene: Maqu_0810: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Marinobacter sp. ELB17 Site: position = -44 score = 4.90154 sequence = ATGAATTCTATTCAC Site: position = -65 score = 4.05719 sequence = ATGGTATTATTTCAC Gene: MELB17_19816: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Oceanobacter sp. RED65 Site: position = -29 score = 3.68523 sequence = CTGTATCTCATTCAT Site: position = -53 score = 3.61864 sequence = ATGAATATTCCTAAT Gene: RED65_10519: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Gene: MED92_02289: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Gene: Mmwyl1_3390: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Saccharophagus degradans 2-40 Site: position = -13 score = 5.22028 sequence = ATGAATTTTAATCAT Site: position = -44 score = 4.20008 sequence = GTGAATAAAATTGAT Gene: Sde_0637: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Teredinibacter turnerae T7901 Site: position = 0 score = 4.50915 sequence = ATGGTATTATTTCAT Site: position = 21 score = 5.35351 sequence = ATGAATACAATTCAT Gene: TERTU_4689: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Cellvibrio japonicus Ueda107 Site: position = -84 score = 4.65204 sequence = ATGAATTTAATTAAT Site: position = -115 score = 3.98024 sequence = ATGAATCAAACTGAT Gene: CJA_2446: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Chromohalobacter salexigens DSM 3043 Site: position = -20 score = 4.29234 sequence = ATGAACGGCACTCAT Site: position = -139 score = 3.8959 sequence = ATGAGTGACTTTCAG Gene: Csal_0671: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Reinekea sp. MED297 Site: position = -84 score = 4.58421 sequence = ATGGTATTAATTCAT Site: position = -63 score = 5.02378 sequence = ATGAGTAAAATTCAT Gene: MED297_11750: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
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Alcanivorax borkumensis SK2 Site: position = -96 score = 4.39751 sequence = ATGAATTTTTCTCAA Site: position = -13 score = 4.39374 sequence = AGGAAAGGCATTCAT Gene: ABO_0862: Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Homocysteine-responsive transcriptional regulator of methionine metabolism, LysR family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |