Regulog ScrR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sucrose utilization
Effector:	Sucrose
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 21 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By TF family - LacI
By effector - Sucrose
By pathway - Sucrose utilization

Statistics of regulated genes
Genome	Genes	Operons
Alteromonadales bacterium TW-7	4	3
Alteromonas macleodii 'Deep ecotype'	5	5
Colwellia psychrerythraea 34H
Glaciecola sp. HTCC2999	10	5
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas atlantica T6c	5	4
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2	4	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
GHTCC_010100010863	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -75 score = 5.93154 sequence = ACCCTTAATCGATTAAGTTT Gene: GHTCC_010100010863: putative sugar transport protein	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	putative sugar transport protein
ogl	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100010858: putative oligo-1,6-glucosidase	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	putative oligo-1,6-glucosidase

CRON 2.
omp(Scr)2	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -109 score = 5.95177 sequence = TTACTTAATCAATTAAGAAA Gene: GHTCC_010100001240: Predicted sucrose-specific TonB-dependent receptor	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Predicted sucrose-specific TonB-dependent receptor
trpH2	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100001235: tryptophan halogenase	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	tryptophan halogenase
trpH	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100001230: tryptophan halogenase	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	tryptophan halogenase
MADE_01454	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100001225: metallo-beta-lactamase family protein	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	metallo-beta-lactamase family protein

CRON 3.
scrP	* Alteromonadales bacterium TW-7 Site: position = -38 score = 6.95982 sequence = TATCTTAATCGATTAAGATT Gene: ATW7_02152: Sucrose phosphorylase (EC 2.4.1.7)	* Alteromonas macleodii 'Deep ecotype' Site: position = -202 score = 6.58815 sequence = TATCTTAATCGATTAAGAGT Gene: MADE_01971: Sucrose phosphorylase (EC 2.4.1.7)	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -37 score = 6.63858 sequence = ATACTTAATCGATTAAGATT Gene: GHTCC_010100011053: Sucrose phosphorylase (EC 2.4.1.7)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -35 score = 6.95982 sequence = TATCTTAATCGATTAAGATT Gene: PTD2_22187: Sucrose phosphorylase (EC 2.4.1.7)	Sucrose phosphorylase (EC 2.4.1.7)

CRON 4.
scrR	Alteromonadales bacterium TW-7 Gene: ATW7_02157: Transcriptional regulator for sucrose utilization, LacI family	* Alteromonas macleodii 'Deep ecotype' Site: position = -108 score = 5.80045 sequence = TAAGTTAAACGTTTAAGATA Gene: MADE_02629: Transcriptional regulator for sucrose utilization, LacI family	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -81 score = 5.94409 sequence = TCGCTTAATCGATTAAGTTT Gene: GHTCC_010100004760: Transcriptional regulator for sucrose utilization, LacI family	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -377 score = 6.29075 sequence = CATCTTAAACGTTTAAGATT Gene: Patl_3821: Transcriptional regulator for sucrose utilization, LacI family	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2 Gene: PTD2_22182: Transcriptional regulator for sucrose utilization, LacI family	Transcriptional regulator for sucrose utilization, LacI family

CRON 5.
scrT	* Alteromonadales bacterium TW-7 Site: position = -158 score = 6.95982 sequence = AATCTTAATCGATTAAGATA Gene: ATW7_02147: Predicted sucrose permease, MFS family, FucP subfamily	* Alteromonas macleodii 'Deep ecotype' Site: position = -211 score = 6.71921 sequence = TATCTTAATCGTTTAAGATT Gene: MADE_00677: Predicted sucrose permease, MFS family, FucP subfamily	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -146 score = 6.40017 sequence = TATCTTAAACGATTAAGTTG Gene: Patl_3819: Predicted sucrose permease, MFS family, FucP subfamily	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -206 score = 6.95982 sequence = AATCTTAATCGATTAAGATA Gene: PTD2_22192: Predicted sucrose permease, MFS family, FucP subfamily	Predicted sucrose permease, MFS family, FucP subfamily

CRON 6.
ATW7_17172	Alteromonadales bacterium TW-7 Gene: ATW7_17172: Alpha-glucosidase	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	* Glaciecola sp. HTCC2999 Site: position = -97 score = 6.56292 sequence = AATCTTAATCGTTTAAGTTT Gene: GHTCC_010100000760: Alpha-glucosidase	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2848: Alpha-glucosidase (EC 3.2.1.20)	Pseudoalteromonas tunicata D2 Gene: PTD2_01461: Alpha-glucosidase (EC 3.2.1.20)	Alpha-glucosidase
ATW7_16475	Alteromonadales bacterium TW-7 Gene: ATW7_16475: hypothetical protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02608: putative ATP synthase F0, A subunit	Colwellia psychrerythraea 34H Gene: CPS_4187: hypothetical protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000755: putative ATP synthase F0, A subunit	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0039: conserved protein of unknown function	Pseudoalteromonas tunicata D2 Gene: PTD2_09697: hypothetical protein	hypothetical protein

CRON 7.
omp(Scr)	* Alteromonadales bacterium TW-7 Site: position = -61 score = 6.35499 sequence = TTACTTAATCGATTAAGTAA Gene: ATW7_02142: Predicted sucrose-specific TonB-dependent receptor	* Alteromonas macleodii 'Deep ecotype' Site: position = -101 score = 6.47363 sequence = ATTCTTAATCGATTAAGTAT Gene: MADE_02625: Predicted sucrose-specific TonB-dependent receptor	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	* Pseudoalteromonas tunicata D2 Site: position = -68 score = 6.47583 sequence = TAACTTAATCGATTAAGAAG Gene: PTD2_22197: Predicted sucrose-specific TonB-dependent receptor	Predicted sucrose-specific TonB-dependent receptor
scrK	Alteromonadales bacterium TW-7 Gene: ATW7_02137: Fructokinase (EC 2.7.1.4)	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2 Gene: PTD2_22202: Fructokinase (EC 2.7.1.4)	Fructokinase (EC 2.7.1.4)

CRON 8.
ams	Alteromonadales bacterium TW-7	* Alteromonas macleodii 'Deep ecotype' Site: position = -108 score = 6.71921 sequence = AATCTTAAACGATTAAGATA Gene: MADE_00676: Amylosucrase (EC 2.4.1.4)	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -160 score = 6.40017 sequence = CAACTTAATCGTTTAAGATA Site: position = -31 score = 5.54075 sequence = TAACTTAATCGTTTTAGACA Gene: Patl_3820: Amylosucrase (EC 2.4.1.4)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Amylosucrase (EC 2.4.1.4)

CRON 9.
Patl_3822	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -155 score = 6.29075 sequence = AATCTTAAACGTTTAAGATG Gene: Patl_3822: Predicted sucrose transporter	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Predicted sucrose transporter
scrB	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype'	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_3823: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Sucrose-6-phosphate hydrolase (EC 3.2.1.26)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog ScrR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --