Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SMc04260 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 15 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 8 4
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099 7 2
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 5 2
Rhizobium leguminosarum bv. viciae 3841 9 3
Rhizobium sp. NGR234 2 2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 8 2
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bgl
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -105
score = 5.09187
sequence = ATCCTGAAACGTTGTAGATT

Gene: Atu4485: Beta-glucosidase
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -108
score = 5.90148
sequence = CTACTGTAACGTTGCAGTTT

Gene: RHE_CH03640: Beta-glucosidase
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -102
score = 5.69392
sequence = CTCCTGCAACGTTGCAGTTT

Gene: RL4168: Beta-glucosidase
 
Rhizobium sp. NGR234

Gene: NGR_c29440: Beta-glucosidase
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc03160: Beta-glucosidase
 
Xanthobacter autotrophicus Py2
Beta-glucosidase
 
CRON 2.
SMc04260
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu1522: Transcriptional regulator, LacI family
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
*
Mesorhizobium loti MAFF303099

Site:
position = -116
score = 5.74518
sequence = AATCTGTAACGTTTCAGTAT

Gene: mlr3320: Transcriptional regulator, LacI family
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02462: Transcriptional regulator, LacI family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -119
score = 5.60457
sequence = CTACTGTATCGTTACAGATT

Gene: RL2797: Transcriptional regulator, LacI family
*
Rhizobium sp. NGR234

Site:
position = -175
score = 5.62812
sequence = CTACTGTATCGTTACAGATA

Gene: NGR_c17850: Transcriptional regulator, LacI family
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -143
score = 5.60457
sequence = CTACTGTATCGTTACAGATT

Gene: SMc04260: Transcriptional regulator, LacI family
 
Xanthobacter autotrophicus Py2
Transcriptional regulator, LacI family
 
CRON 3.
SMc04259
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -32
score = 5.67861
sequence = CTACTGCAACGTTTCAGTGA

Gene: Atu3352: Sugar ABC transporter, substrate-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
*
Mesorhizobium loti MAFF303099

Site:
position = -35
score = 5.56701
sequence = AATCTGTAACGTTTCAGATT

Gene: mll3319: Sugar ABC transporter, substrate-binding protein
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -33
score = 5.43618
sequence = TTCCGGCAACGTTTCAGTGA

Gene: RHE_CH02461: Sugar ABC transporter, substrate-binding protein
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -33
score = 5.43618
sequence = TTCCGGCAACGTTTCAGTGA

Gene: RL2796: Sugar ABC transporter, substrate-binding protein
*
Rhizobium sp. NGR234

Site:
position = -32
score = 5.78891
sequence = TTACGGTAACGTTACAGTGA

Gene: NGR_c17830: Sugar ABC transporter, substrate-binding protein
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -32
score = 5.71385
sequence = TTACGGCAACGTTACAGTGA

Gene: SMc04259: Sugar ABC transporter, substrate-binding protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, substrate-binding protein
SMc04258
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -28
score = 5.58138
sequence = TGACTGTAACGTTACAGGAG

Gene: Atu3351: Sugar ABC transporter, inner membrane protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll3316: Sugar ABC transporter, inner membrane protein
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02460: Sugar ABC transporter, inner membrane protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2795: Sugar ABC transporter, inner membrane protein
 
Rhizobium sp. NGR234

Gene: NGR_c17820: Sugar ABC transporter, inner membrane protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc04258: Sugar ABC transporter, inner membrane protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, inner membrane protein
SMc04257
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3350: Sugar ABC transporter, inner membrane protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll3315: Sugar ABC transporter, inner membrane protein
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02459: Sugar ABC transporter, inner membrane protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2794: Sugar ABC transporter, inner membrane protein
 
Rhizobium sp. NGR234

Gene: NGR_c17810: Sugar ABC transporter, inner membrane protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc04257: Sugar ABC transporter, inner membrane protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, inner membrane protein
SMc04256
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3349: Sugar ABC transporter, ATP-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll3314: Sugar ABC transporter, ATP-binding protein
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02458: Sugar ABC transporter, ATP-binding protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2793: Sugar ABC transporter, ATP-binding protein
 
Rhizobium sp. NGR234

Gene: NGR_c17800: Sugar ABC transporter, ATP-binding protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc04256: Sugar ABC transporter, ATP-binding protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, ATP-binding protein
manA
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -150
score = 5.53351
sequence = TTACGGTAACGTTGCCGGAG

Gene: Atu1523: Beta-mannosidase (EC 3.2.1.25)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02457: Beta-mannosidase (EC 3.2.1.25)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2792: Beta-mannosidase (EC 3.2.1.25)
 
Rhizobium sp. NGR234

Gene: NGR_c17790: Beta-mannosidase (EC 3.2.1.25)
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc04255: Beta-mannosidase (EC 3.2.1.25)
 
Xanthobacter autotrophicus Py2
Beta-mannosidase (EC 3.2.1.25)
COG1082
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3348: Sugar phosphate isomerases/epimerases
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll3313: Sugar phosphate isomerases/epimerases
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02456: Sugar phosphate isomerases/epimerases
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2791: Sugar phosphate isomerases/epimerases
 
Rhizobium sp. NGR234

Gene: NGR_c17780: Sugar phosphate isomerases/epimerases
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc04254: Sugar phosphate isomerases/epimerases
 
Xanthobacter autotrophicus Py2
Sugar phosphate isomerases/epimerases
COG0673
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3347: Predicted dehydrogenases and related proteins
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll3311: Predicted dehydrogenases and related proteins
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH02455: Predicted dehydrogenases and related proteins
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL2790: Predicted dehydrogenases and related proteins
 
Rhizobium sp. NGR234

Gene: NGR_c17770: Predicted dehydrogenases and related proteins
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMc04253: Predicted dehydrogenases and related proteins
 
Xanthobacter autotrophicus Py2
Predicted dehydrogenases and related proteins
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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