Regulog SMc04260 - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sugar utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 15 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Agrobacterium tumefaciens str. C58 (Cereon)	8	4
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099	7	2
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42	5	2
Rhizobium leguminosarum bv. viciae 3841	9	3
Rhizobium sp. NGR234	2	2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021	8	2
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
bgl	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -105 score = 5.09187 sequence = ATCCTGAAACGTTGTAGATT Gene: Atu4485: Beta-glucosidase	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -108 score = 5.90148 sequence = CTACTGTAACGTTGCAGTTT Gene: RHE_CH03640: Beta-glucosidase	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -102 score = 5.69392 sequence = CTCCTGCAACGTTGCAGTTT Gene: RL4168: Beta-glucosidase	Rhizobium sp. NGR234 Gene: NGR_c29440: Beta-glucosidase	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc03160: Beta-glucosidase	Xanthobacter autotrophicus Py2	Beta-glucosidase

CRON 2.
SMc04260	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu1522: Transcriptional regulator, LacI family	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -116 score = 5.74518 sequence = AATCTGTAACGTTTCAGTAT Gene: mlr3320: Transcriptional regulator, LacI family	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH02462: Transcriptional regulator, LacI family	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -119 score = 5.60457 sequence = CTACTGTATCGTTACAGATT Gene: RL2797: Transcriptional regulator, LacI family	* Rhizobium sp. NGR234 Site: position = -175 score = 5.62812 sequence = CTACTGTATCGTTACAGATA Gene: NGR_c17850: Transcriptional regulator, LacI family	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -143 score = 5.60457 sequence = CTACTGTATCGTTACAGATT Gene: SMc04260: Transcriptional regulator, LacI family	Xanthobacter autotrophicus Py2	Transcriptional regulator, LacI family

CRON 3.
SMc04259	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -32 score = 5.67861 sequence = CTACTGCAACGTTTCAGTGA Gene: Atu3352: Sugar ABC transporter, substrate-binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	* Mesorhizobium loti MAFF303099 Site: position = -35 score = 5.56701 sequence = AATCTGTAACGTTTCAGATT Gene: mll3319: Sugar ABC transporter, substrate-binding protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	* Rhizobium etli CFN 42 Site: position = -33 score = 5.43618 sequence = TTCCGGCAACGTTTCAGTGA Gene: RHE_CH02461: Sugar ABC transporter, substrate-binding protein	* Rhizobium leguminosarum bv. viciae 3841 Site: position = -33 score = 5.43618 sequence = TTCCGGCAACGTTTCAGTGA Gene: RL2796: Sugar ABC transporter, substrate-binding protein	* Rhizobium sp. NGR234 Site: position = -32 score = 5.78891 sequence = TTACGGTAACGTTACAGTGA Gene: NGR_c17830: Sugar ABC transporter, substrate-binding protein	Rhodopseudomonas palustris CGA009	* Sinorhizobium meliloti 1021 Site: position = -32 score = 5.71385 sequence = TTACGGCAACGTTACAGTGA Gene: SMc04259: Sugar ABC transporter, substrate-binding protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, substrate-binding protein
SMc04258	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -28 score = 5.58138 sequence = TGACTGTAACGTTACAGGAG Gene: Atu3351: Sugar ABC transporter, inner membrane protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll3316: Sugar ABC transporter, inner membrane protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH02460: Sugar ABC transporter, inner membrane protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2795: Sugar ABC transporter, inner membrane protein	Rhizobium sp. NGR234 Gene: NGR_c17820: Sugar ABC transporter, inner membrane protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04258: Sugar ABC transporter, inner membrane protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, inner membrane protein
SMc04257	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3350: Sugar ABC transporter, inner membrane protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll3315: Sugar ABC transporter, inner membrane protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH02459: Sugar ABC transporter, inner membrane protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2794: Sugar ABC transporter, inner membrane protein	Rhizobium sp. NGR234 Gene: NGR_c17810: Sugar ABC transporter, inner membrane protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04257: Sugar ABC transporter, inner membrane protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, inner membrane protein
SMc04256	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3349: Sugar ABC transporter, ATP-binding protein	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll3314: Sugar ABC transporter, ATP-binding protein	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH02458: Sugar ABC transporter, ATP-binding protein	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2793: Sugar ABC transporter, ATP-binding protein	Rhizobium sp. NGR234 Gene: NGR_c17800: Sugar ABC transporter, ATP-binding protein	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04256: Sugar ABC transporter, ATP-binding protein	Xanthobacter autotrophicus Py2	Sugar ABC transporter, ATP-binding protein
manA	* Agrobacterium tumefaciens str. C58 (Cereon) Site: position = -150 score = 5.53351 sequence = TTACGGTAACGTTGCCGGAG Gene: Atu1523: Beta-mannosidase (EC 3.2.1.25)	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH02457: Beta-mannosidase (EC 3.2.1.25)	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2792: Beta-mannosidase (EC 3.2.1.25)	Rhizobium sp. NGR234 Gene: NGR_c17790: Beta-mannosidase (EC 3.2.1.25)	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04255: Beta-mannosidase (EC 3.2.1.25)	Xanthobacter autotrophicus Py2	Beta-mannosidase (EC 3.2.1.25)
COG1082	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3348: Sugar phosphate isomerases/epimerases	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll3313: Sugar phosphate isomerases/epimerases	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH02456: Sugar phosphate isomerases/epimerases	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2791: Sugar phosphate isomerases/epimerases	Rhizobium sp. NGR234 Gene: NGR_c17780: Sugar phosphate isomerases/epimerases	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04254: Sugar phosphate isomerases/epimerases	Xanthobacter autotrophicus Py2	Sugar phosphate isomerases/epimerases
COG0673	Agrobacterium tumefaciens str. C58 (Cereon) Gene: Atu3347: Predicted dehydrogenases and related proteins	Azorhizobium caulinodans ORS 571	Bartonella quintana str. Toulouse	Bradyrhizobium japonicum USDA 110	Bradyrhizobium sp. BTAi1	Brucella melitensis 16M	Mesorhizobium loti MAFF303099 Gene: mll3311: Predicted dehydrogenases and related proteins	Mesorhizobium sp. BNC1	Nitrobacter winogradskyi Nb-255	Rhizobium etli CFN 42 Gene: RHE_CH02455: Predicted dehydrogenases and related proteins	Rhizobium leguminosarum bv. viciae 3841 Gene: RL2790: Predicted dehydrogenases and related proteins	Rhizobium sp. NGR234 Gene: NGR_c17770: Predicted dehydrogenases and related proteins	Rhodopseudomonas palustris CGA009	Sinorhizobium meliloti 1021 Gene: SMc04253: Predicted dehydrogenases and related proteins	Xanthobacter autotrophicus Py2	Predicted dehydrogenases and related proteins

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SMc04260 - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --