Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Rhodobacterales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodobacter sphaeroides 2.4.1 9 2
Paracoccus denitrificans PD1222 12 3
Jannaschia sp. CCS1 3 1
Rhodobacterales bacterium HTCC2654 7 2
Oceanicola granulosus HTCC2516 7 2
Loktanella vestfoldensis SKA53 3 1
Oceanicola batsensis HTCC2597 18 4
Roseovarius nubinhibens ISM 10 2
Roseovarius sp. 217 12 3
Sulfitobacter sp. EE-36 13 2
Silicibacter TM1040 14 3
Silicibacter pomeroyi DSS-3 10 1
Roseobacter sp. MED193 10 2
Hyphomonas neptunium ATCC 15444 2 1
Oceanicaulis alexandrii HTCC2633 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00293
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_2044: ADP-ribose pyrophosphatase (EC 3.6.1.13)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_04771: ADP-ribose pyrophosphatase (EC 3.6.1.13)
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12983: ADP-ribose pyrophosphatase (EC 3.6.1.13)
*
Oceanicola batsensis HTCC2597

Site:
position = -152
score = 63.71
sequence = GCCCCTCACCTAGGG...

Gene: OB2597_18032: ADP-ribose pyrophosphatase (EC 3.6.1.13)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040

Gene: TM1040_3067: ADP-ribose pyrophosphatase (EC 3.6.1.13)
 
Silicibacter pomeroyi DSS-3

Gene: SPO0294: ADP-ribose pyrophosphatase (EC 3.6.1.13)
 
Roseobacter sp. MED193

Gene: MED193_10838: ADP-ribose pyrophosphatase (EC 3.6.1.13)
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2782: ADP-ribose pyrophosphatase (EC 3.6.1.13)
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_14381: ADP-ribose pyrophosphatase (EC 3.6.1.13)
ADP-ribose pyrophosphatase (EC 3.6.1.13)
thiD
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_18027: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
CRON 2.
ykoF
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
*
Rhodobacterales bacterium HTCC2654

Site:
position = -100
score = 68.06
sequence = CACATAACCAGGGGT...

Gene: RB2654_21928: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Oceanicola granulosus HTCC2516

Site:
position = -99
score = 65.58
sequence = CGAACATAACCGGGG...

Gene: OG2516_13249: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
thiX2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_21933: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13244: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiZ2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_21938: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13239: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hydroxymethylpyrimidine ABC transporter, ATPase component
thiY2
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_21943: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Oceanicola granulosus HTCC2516

Gene: OG2516_13234: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
CRON 3.
thiD
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0647: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
*
Paracoccus denitrificans PD1222

Site:
position = -145
score = 82.38
sequence = ACTCATACACTTGGG...

Gene: Pden_0042: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
*
Oceanicola batsensis HTCC2597

Site:
position = -172
score = 70.8
sequence = GCAGAATCCGTTGGG...

Gene: OB2597_02767: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Roseovarius nubinhibens ISM

Gene: ISM_10651: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
*
Roseovarius sp. 217

Site:
position = -148
score = 80.71
sequence = GCAACATCCGTTGGG...

Gene: ROS217_09305: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
*
Sulfitobacter sp. EE-36

Site:
position = -169
score = 79.57
sequence = CATCTATCCGTCGGG...

Gene: EE36_13848: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
*
Silicibacter TM1040

Site:
position = -146
score = 79.43
sequence = GCGAACCGTTGGGGT...

Gene: TM1040_3649: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
*
Silicibacter pomeroyi DSS-3

Site:
position = -148
score = 78.18
sequence = GCCAACCGTTGGGGT...

Gene: SPO0045: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Roseobacter sp. MED193

Gene: MED193_07758: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiO
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0041: Glycine oxidase ThiO (EC 1.4.3.19)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02762: Glycine oxidase ThiO (EC 1.4.3.19)
 
Roseovarius nubinhibens ISM

Gene: ISM_10626: Glycine oxidase ThiO (EC 1.4.3.19)
 
Roseovarius sp. 217

Gene: ROS217_09300: Glycine oxidase ThiO (EC 1.4.3.19)
 
Sulfitobacter sp. EE-36

Gene: EE36_13843: Glycine oxidase ThiO (EC 1.4.3.19)
 
Silicibacter TM1040

Gene: TM1040_3650: Glycine oxidase ThiO (EC 1.4.3.19)
 
Silicibacter pomeroyi DSS-3

Gene: SPO0046: Glycine oxidase ThiO (EC 1.4.3.19)
 
Roseobacter sp. MED193

Gene: MED193_07733: Glycine oxidase ThiO (EC 1.4.3.19)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_03971: Glycine oxidase ThiO (EC 1.4.3.19)
Glycine oxidase ThiO (EC 1.4.3.19)
thiS
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0040: Sulfur carrier protein ThiS
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02757: Sulfur carrier protein ThiS
 
Roseovarius nubinhibens ISM

Gene: ISM_10631: Sulfur carrier protein ThiS
 
Roseovarius sp. 217

Gene: ROS217_09295: Sulfur carrier protein ThiS
 
Sulfitobacter sp. EE-36

Gene: EE36_13838: Sulfur carrier protein ThiS
 
Silicibacter TM1040

Gene: TM1040_3651: Sulfur carrier protein ThiS
 
Silicibacter pomeroyi DSS-3

Gene: SPO0046.1: Sulfur carrier protein ThiS
 
Roseobacter sp. MED193

Gene: MED193_07738: Sulfur carrier protein ThiS
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2247: Sulfur carrier protein ThiS
 
Oceanicaulis alexandrii HTCC2633
Sulfur carrier protein ThiS
thiG
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0039: Thiazole biosynthesis protein ThiG
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02752: Thiazole biosynthesis protein ThiG
 
Roseovarius nubinhibens ISM

Gene: ISM_10636: Thiazole biosynthesis protein ThiG
 
Roseovarius sp. 217

Gene: ROS217_09290: Thiazole biosynthesis protein ThiG
 
Sulfitobacter sp. EE-36

Gene: EE36_13833: Thiazole biosynthesis protein ThiG
 
Silicibacter TM1040

Gene: TM1040_3652: Thiazole biosynthesis protein ThiG
 
Silicibacter pomeroyi DSS-3

Gene: SPO0047: Thiazole biosynthesis protein ThiG
 
Roseobacter sp. MED193

Gene: MED193_07743: Thiazole biosynthesis protein ThiG
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_2246: Thiazole biosynthesis protein ThiG
 
Oceanicaulis alexandrii HTCC2633
Thiazole biosynthesis protein ThiG
thiE
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0648: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Paracoccus denitrificans PD1222

Gene: Pden_0038: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 2
Oceanicola batsensis HTCC2597

Gene: OB2597_18022: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

Gene: OB2597_02747: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Roseovarius nubinhibens ISM

Gene: ISM_10641: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Roseovarius sp. 217

Gene: ROS217_09285: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Sulfitobacter sp. EE-36

Gene: EE36_13828: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Silicibacter TM1040

Gene: TM1040_3653: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Silicibacter pomeroyi DSS-3

Gene: SPO0048: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Roseobacter sp. MED193

Gene: MED193_07748: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222

Gene: Pden_0037: Thiamine biosynthesis protein ThiF
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02742: Thiamine biosynthesis protein ThiF
 
Roseovarius nubinhibens ISM

Gene: ISM_10646: Thiamine biosynthesis protein ThiF
 
Roseovarius sp. 217

Gene: ROS217_09280: Thiamine biosynthesis protein ThiF
 
Sulfitobacter sp. EE-36

Gene: EE36_13823: Thiamine biosynthesis protein ThiF
 
Silicibacter TM1040

Gene: TM1040_3654: Thiamine biosynthesis protein ThiF
 
Silicibacter pomeroyi DSS-3

Gene: SPO0049: Thiamine biosynthesis protein ThiF
 
Roseobacter sp. MED193

Gene: MED193_07753: Thiamine biosynthesis protein ThiF
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Thiamine biosynthesis protein ThiF
thiY
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0646: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Paracoccus denitrificans PD1222

Gene: Pden_0036: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02737: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_09275: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Sulfitobacter sp. EE-36

Gene: EE36_13818: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Silicibacter TM1040

Gene: TM1040_3655: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Silicibacter pomeroyi DSS-3

Gene: SPO0050: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
tenA
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_3694: Thiaminase II (EC 3.5.99.2)
*2
Paracoccus denitrificans PD1222

Gene: Pden_0035: Thiaminase II (EC 3.5.99.2)

Site:
position = -196
score = 52.9
sequence = GCGCCACCAAGGGGA...

Gene: Pden_3673: Thiaminase II (EC 3.5.99.2)
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02732: Thiaminase II (EC 3.5.99.2)
 
Roseovarius nubinhibens ISM
 2
Roseovarius sp. 217

Gene: ROS217_09270: Thiaminase II (EC 3.5.99.2)

Gene: ROS217_22407: Thiaminase II (EC 3.5.99.2)
 
Sulfitobacter sp. EE-36

Gene: EE36_13813: Thiaminase II (EC 3.5.99.2)
 
Silicibacter TM1040

Gene: TM1040_3656: Thiaminase II (EC 3.5.99.2)
 
Silicibacter pomeroyi DSS-3

Gene: SPO0051: Thiaminase II (EC 3.5.99.2)
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Thiaminase II (EC 3.5.99.2)
thiZ
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0645: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Paracoccus denitrificans PD1222

Gene: Pden_0034: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02727: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Roseovarius nubinhibens ISM
*
Roseovarius sp. 217

Site:
position = -150
score = 61.92
sequence = GATATCCGTTGGGGT...

Gene: ROS217_22402: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Sulfitobacter sp. EE-36

Gene: EE36_13808: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Silicibacter TM1040

Gene: TM1040_3657: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Silicibacter pomeroyi DSS-3

Gene: SPO0052: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_0644: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Paracoccus denitrificans PD1222

Gene: Pden_0033: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_02722: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217

Gene: ROS217_22412: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Sulfitobacter sp. EE-36

Gene: EE36_13803: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Silicibacter TM1040

Gene: TM1040_3658: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Silicibacter pomeroyi DSS-3

Gene: SPO0053: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiC
 
Rhodobacter sphaeroides 2.4.1
*
Paracoccus denitrificans PD1222

Site:
position = -253
score = 50.95
sequence = CCTCACGTCAGGGGA...

Gene: Pden_2944: Thiamin biosynthesis protein ThiC
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
*
Oceanicola batsensis HTCC2597

Site:
position = -260
score = 67.3
sequence = GCACTCACCCGGGGG...

Gene: OB2597_18012: Thiamin biosynthesis protein ThiC
*
Roseovarius nubinhibens ISM

Site:
position = -223
score = 52.15
sequence = ATTGCACGCAGGGGG...

Gene: ISM_10621: Thiamin biosynthesis protein ThiC
*
Roseovarius sp. 217

Site:
position = -236
score = 56.6
sequence = AAGAGGGACGCAGGG...

Gene: ROS217_02430: Thiamin biosynthesis protein ThiC
 
Sulfitobacter sp. EE-36
*
Silicibacter TM1040

Site:
position = -242
score = 48.23
sequence = GCAGCACGCAGGGGA...

Gene: TM1040_2054: Thiamin biosynthesis protein ThiC
 
Silicibacter pomeroyi DSS-3
*
Roseobacter sp. MED193

Site:
position = -246
score = 49.92
sequence = TAGCCTACGCAGGGG...

Gene: MED193_07728: Thiamin biosynthesis protein ThiC
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_3338: Thiamin biosynthesis protein ThiC
 
Oceanicaulis alexandrii HTCC2633

Gene: OA2633_07204: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
thiM
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -146
score = 54.33
sequence = TCCGGAGTGACAGGG...

Gene: RSP_0649: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1
 
Rhodobacterales bacterium HTCC2654
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_18017: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Hydroxyethylthiazole kinase (EC 2.7.1.50)
PF04237
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_2721: Protein of unknown function DUF419
 
Paracoccus denitrificans PD1222

Gene: Pden_4064: Protein of unknown function DUF419
 
Jannaschia sp. CCS1

Gene: Jann_1957: Protein of unknown function DUF419
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_01745: Protein of unknown function DUF419
 
Oceanicola granulosus HTCC2516

Gene: OG2516_08713: Protein of unknown function DUF419
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597

Gene: OB2597_04450: Protein of unknown function DUF419
 
Roseovarius nubinhibens ISM

Gene: ISM_00285: Protein of unknown function DUF419
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_07249: Protein of unknown function DUF419
 
Hyphomonas neptunium ATCC 15444

Gene: HNE_0933: Protein of unknown function DUF419
*
Oceanicaulis alexandrii HTCC2633

Site:
position = -101
score = 50.05
sequence = CGTCAGTTCCAAGGG...

Gene: OA2633_07209: Protein of unknown function DUF419
Protein of unknown function DUF419
PF08818
 
Rhodobacter sphaeroides 2.4.1
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_1587: Protein of unknown function DUF1801
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_16736: Protein of unknown function DUF1801
 
Oceanicola granulosus HTCC2516
 
Loktanella vestfoldensis SKA53
 
Oceanicola batsensis HTCC2597
 
Roseovarius nubinhibens ISM
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36
 
Silicibacter TM1040
 
Silicibacter pomeroyi DSS-3

Gene: SPO3485: Protein of unknown function DUF1801
 
Roseobacter sp. MED193

Gene: MED193_13438: Protein of unknown function DUF1801
*
Hyphomonas neptunium ATCC 15444

Site:
position = -93
score = 63.49
sequence = GCATATCCGAGGGGT...

Gene: HNE_3337: Protein of unknown function DUF1801
 
Oceanicaulis alexandrii HTCC2633
Protein of unknown function DUF1801
 
CRON 4.
thiB
*
Rhodobacter sphaeroides 2.4.1

Site:
position = -88
score = 63.93
sequence = GTCCCACCTCGGGGT...

Gene: RSP_1391: Thiamin ABC transporter, substrate-binding component
 
Paracoccus denitrificans PD1222
*
Jannaschia sp. CCS1

Site:
position = -160
score = 52.94
sequence = TAGCGGTACCTCGGG...

Gene: Jann_0330: Thiamin ABC transporter, substrate-binding component
*
Rhodobacterales bacterium HTCC2654

Site:
position = -143
score = 58.83
sequence = CTGCCTCACCTCGGG...

Gene: RB2654_14515: Thiamin ABC transporter, substrate-binding component
*
Oceanicola granulosus HTCC2516

Site:
position = -125
score = 67.37
sequence = GCCCCACCTCGGGGT...

Gene: OG2516_10591: Thiamin ABC transporter, substrate-binding component
*
Loktanella vestfoldensis SKA53

Site:
position = -134
score = 62.93
sequence = GCCCCACCTCGGGGT...

Gene: SKA53_12158: Thiamin ABC transporter, substrate-binding component
*
Oceanicola batsensis HTCC2597

Site:
position = -147
score = 63.65
sequence = GCGCCACCTCGGGGT...

Gene: OB2597_14229: Thiamin ABC transporter, substrate-binding component
*
Roseovarius nubinhibens ISM

Site:
position = -150
score = 55.97
sequence = TGGAGACCTCGGGGT...

Gene: ISM_10586: Thiamin ABC transporter, substrate-binding component
 
Roseovarius sp. 217
*
Sulfitobacter sp. EE-36

Site:
position = -135
score = 81.1
sequence = ATAAGATACCTCGGG...

Gene: EE36_07818: Thiamin ABC transporter, substrate-binding component
*2
Silicibacter TM1040

Gene: TM1040_3572: Thiamin ABC transporter, substrate-binding component

Site:
position = -158
score = 73.27
sequence = TCGCCCCACCTCGGG...

Gene: TM1040_2818: Thiamin ABC transporter, substrate-binding component
 
Silicibacter pomeroyi DSS-3
*
Roseobacter sp. MED193

Site:
position = -128
score = 66.97
sequence = GAGATACCTCGGGGT...

Gene: MED193_14432: Thiamin ABC transporter, substrate-binding component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Thiamin ABC transporter, substrate-binding component
thiP
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_1392: Thiamin ABC transporter, transmembrane component
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_0329: Thiamin ABC transporter, transmembrane component
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_14510: Thiamin ABC transporter, transmembrane component
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10596: Thiamin ABC transporter, transmembrane component
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12163: Thiamin ABC transporter, transmembrane component
 
Oceanicola batsensis HTCC2597

Gene: OB2597_14234: Thiamin ABC transporter, transmembrane component
 
Roseovarius nubinhibens ISM

Gene: ISM_10591: Thiamin ABC transporter, transmembrane component
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_07813: Thiamin ABC transporter, transmembrane component
 
Silicibacter TM1040

Gene: TM1040_2817: Thiamin ABC transporter, transmembrane component
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14437: Thiamin ABC transporter, transmembrane component
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Thiamin ABC transporter, transmembrane component
thiQ
 
Rhodobacter sphaeroides 2.4.1

Gene: RSP_1393: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Paracoccus denitrificans PD1222
 
Jannaschia sp. CCS1

Gene: Jann_0328: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Rhodobacterales bacterium HTCC2654

Gene: RB2654_14505: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Oceanicola granulosus HTCC2516

Gene: OG2516_10601: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Loktanella vestfoldensis SKA53

Gene: SKA53_12168: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Oceanicola batsensis HTCC2597

Gene: OB2597_14239: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Roseovarius nubinhibens ISM

Gene: ISM_10596: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Roseovarius sp. 217
 
Sulfitobacter sp. EE-36

Gene: EE36_07808: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 2
Silicibacter TM1040

Gene: TM1040_0371: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ

Gene: TM1040_2816: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Silicibacter pomeroyi DSS-3
 
Roseobacter sp. MED193

Gene: MED193_14442: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
 
Hyphomonas neptunium ATCC 15444
 
Oceanicaulis alexandrii HTCC2633
Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD