Regulog TPP - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 9 | 2 |
| Paracoccus denitrificans PD1222 | 12 | 3 |
| Jannaschia sp. CCS1 | 3 | 1 |
| Rhodobacterales bacterium HTCC2654 | 7 | 2 |
| Oceanicola granulosus HTCC2516 | 7 | 2 |
| Loktanella vestfoldensis SKA53 | 3 | 1 |
| Oceanicola batsensis HTCC2597 | 18 | 4 |
| Roseovarius nubinhibens ISM | 10 | 2 |
| Roseovarius sp. 217 | 12 | 3 |
| Sulfitobacter sp. EE-36 | 13 | 2 |
| Silicibacter TM1040 | 14 | 3 |
| Silicibacter pomeroyi DSS-3 | 10 | 1 |
| Roseobacter sp. MED193 | 10 | 2 |
| Hyphomonas neptunium ATCC 15444 | 2 | 1 |
| Oceanicaulis alexandrii HTCC2633 | 2 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| PF00293 |
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Gene: Pden_2044: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
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Gene: RB2654_04771: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
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Gene: SKA53_12983: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
*
Oceanicola batsensis HTCC2597 Site: position = -152 score = 63.71 sequence = GCCCCTCACCTAGGG... Gene: OB2597_18032: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
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Gene: TM1040_3067: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: SPO0294: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: MED193_10838: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: HNE_2782: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
Gene: OA2633_14381: ADP-ribose pyrophosphatase (EC 3.6.1.13) |
ADP-ribose pyrophosphatase (EC 3.6.1.13) |
| thiD |
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Gene: OB2597_18027: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| CRON 2. | ||||||||||||||||
| ykoF |
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*
Rhodobacterales bacterium HTCC2654 Site: position = -100 score = 68.06 sequence = CACATAACCAGGGGT... Gene: RB2654_21928: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
*
Oceanicola granulosus HTCC2516 Site: position = -99 score = 65.58 sequence = CGAACATAACCGGGG... Gene: OG2516_13249: Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
| thiX2 |
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Gene: RB2654_21933: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: OG2516_13244: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiZ2 |
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Gene: RB2654_21938: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: OG2516_13239: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiY2 |
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Gene: RB2654_21943: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: OG2516_13234: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| CRON 3. | ||||||||||||||||
| thiD |
Gene: RSP_0647: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Paracoccus denitrificans PD1222 Site: position = -145 score = 82.38 sequence = ACTCATACACTTGGG... Gene: Pden_0042: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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*
Oceanicola batsensis HTCC2597 Site: position = -172 score = 70.8 sequence = GCAGAATCCGTTGGG... Gene: OB2597_02767: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: ISM_10651: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Roseovarius sp. 217 Site: position = -148 score = 80.71 sequence = GCAACATCCGTTGGG... Gene: ROS217_09305: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Sulfitobacter sp. EE-36 Site: position = -169 score = 79.57 sequence = CATCTATCCGTCGGG... Gene: EE36_13848: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Silicibacter TM1040 Site: position = -146 score = 79.43 sequence = GCGAACCGTTGGGGT... Gene: TM1040_3649: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Silicibacter pomeroyi DSS-3 Site: position = -148 score = 78.18 sequence = GCCAACCGTTGGGGT... Gene: SPO0045: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: MED193_07758: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
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Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiO |
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Gene: Pden_0041: Glycine oxidase ThiO (EC 1.4.3.19) |
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Gene: OB2597_02762: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: ISM_10626: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: ROS217_09300: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: EE36_13843: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: TM1040_3650: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: SPO0046: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: MED193_07733: Glycine oxidase ThiO (EC 1.4.3.19) |
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Gene: OA2633_03971: Glycine oxidase ThiO (EC 1.4.3.19) |
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiS |
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Gene: Pden_0040: Sulfur carrier protein ThiS |
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Gene: OB2597_02757: Sulfur carrier protein ThiS |
Gene: ISM_10631: Sulfur carrier protein ThiS |
Gene: ROS217_09295: Sulfur carrier protein ThiS |
Gene: EE36_13838: Sulfur carrier protein ThiS |
Gene: TM1040_3651: Sulfur carrier protein ThiS |
Gene: SPO0046.1: Sulfur carrier protein ThiS |
Gene: MED193_07738: Sulfur carrier protein ThiS |
Gene: HNE_2247: Sulfur carrier protein ThiS |
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Sulfur carrier protein ThiS |
| thiG |
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Gene: Pden_0039: Thiazole biosynthesis protein ThiG |
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Gene: OB2597_02752: Thiazole biosynthesis protein ThiG |
Gene: ISM_10636: Thiazole biosynthesis protein ThiG |
Gene: ROS217_09290: Thiazole biosynthesis protein ThiG |
Gene: EE36_13833: Thiazole biosynthesis protein ThiG |
Gene: TM1040_3652: Thiazole biosynthesis protein ThiG |
Gene: SPO0047: Thiazole biosynthesis protein ThiG |
Gene: MED193_07743: Thiazole biosynthesis protein ThiG |
Gene: HNE_2246: Thiazole biosynthesis protein ThiG |
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Thiazole biosynthesis protein ThiG |
| thiE |
Gene: RSP_0648: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Pden_0038: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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2
Oceanicola batsensis HTCC2597 Gene: OB2597_18022: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: OB2597_02747: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: ISM_10641: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: ROS217_09285: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: EE36_13828: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: TM1040_3653: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: SPO0048: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: MED193_07748: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiF |
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Gene: Pden_0037: Thiamine biosynthesis protein ThiF |
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Gene: OB2597_02742: Thiamine biosynthesis protein ThiF |
Gene: ISM_10646: Thiamine biosynthesis protein ThiF |
Gene: ROS217_09280: Thiamine biosynthesis protein ThiF |
Gene: EE36_13823: Thiamine biosynthesis protein ThiF |
Gene: TM1040_3654: Thiamine biosynthesis protein ThiF |
Gene: SPO0049: Thiamine biosynthesis protein ThiF |
Gene: MED193_07753: Thiamine biosynthesis protein ThiF |
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Thiamine biosynthesis protein ThiF |
| thiY |
Gene: RSP_0646: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: Pden_0036: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Gene: OB2597_02737: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Gene: ROS217_09275: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: EE36_13818: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: TM1040_3655: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
Gene: SPO0050: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| tenA |
Gene: RSP_3694: Thiaminase II (EC 3.5.99.2) |
*2
Paracoccus denitrificans PD1222 Gene: Pden_0035: Thiaminase II (EC 3.5.99.2) Site: position = -196 score = 52.9 sequence = GCGCCACCAAGGGGA... Gene: Pden_3673: Thiaminase II (EC 3.5.99.2) |
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Gene: OB2597_02732: Thiaminase II (EC 3.5.99.2) |
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2
Roseovarius sp. 217 Gene: ROS217_09270: Thiaminase II (EC 3.5.99.2) Gene: ROS217_22407: Thiaminase II (EC 3.5.99.2) |
Gene: EE36_13813: Thiaminase II (EC 3.5.99.2) |
Gene: TM1040_3656: Thiaminase II (EC 3.5.99.2) |
Gene: SPO0051: Thiaminase II (EC 3.5.99.2) |
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Thiaminase II (EC 3.5.99.2) |
| thiZ |
Gene: RSP_0645: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: Pden_0034: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Gene: OB2597_02727: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Roseovarius sp. 217 Site: position = -150 score = 61.92 sequence = GATATCCGTTGGGGT... Gene: ROS217_22402: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: EE36_13808: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: TM1040_3657: Hydroxymethylpyrimidine ABC transporter, ATPase component |
Gene: SPO0052: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiX |
Gene: RSP_0644: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: Pden_0033: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Gene: OB2597_02722: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Gene: ROS217_22412: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: EE36_13803: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: TM1040_3658: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
Gene: SPO0053: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiC |
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Paracoccus denitrificans PD1222 Site: position = -253 score = 50.95 sequence = CCTCACGTCAGGGGA... Gene: Pden_2944: Thiamin biosynthesis protein ThiC |
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Oceanicola batsensis HTCC2597 Site: position = -260 score = 67.3 sequence = GCACTCACCCGGGGG... Gene: OB2597_18012: Thiamin biosynthesis protein ThiC |
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Roseovarius nubinhibens ISM Site: position = -223 score = 52.15 sequence = ATTGCACGCAGGGGG... Gene: ISM_10621: Thiamin biosynthesis protein ThiC |
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Roseovarius sp. 217 Site: position = -236 score = 56.6 sequence = AAGAGGGACGCAGGG... Gene: ROS217_02430: Thiamin biosynthesis protein ThiC |
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Silicibacter TM1040 Site: position = -242 score = 48.23 sequence = GCAGCACGCAGGGGA... Gene: TM1040_2054: Thiamin biosynthesis protein ThiC |
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Roseobacter sp. MED193 Site: position = -246 score = 49.92 sequence = TAGCCTACGCAGGGG... Gene: MED193_07728: Thiamin biosynthesis protein ThiC |
Gene: HNE_3338: Thiamin biosynthesis protein ThiC |
Gene: OA2633_07204: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| thiM |
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Rhodobacter sphaeroides 2.4.1 Site: position = -146 score = 54.33 sequence = TCCGGAGTGACAGGG... Gene: RSP_0649: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
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Gene: OB2597_18017: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
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Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| PF04237 |
Gene: RSP_2721: Protein of unknown function DUF419 |
Gene: Pden_4064: Protein of unknown function DUF419 |
Gene: Jann_1957: Protein of unknown function DUF419 |
Gene: RB2654_01745: Protein of unknown function DUF419 |
Gene: OG2516_08713: Protein of unknown function DUF419 |
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Gene: OB2597_04450: Protein of unknown function DUF419 |
Gene: ISM_00285: Protein of unknown function DUF419 |
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Gene: MED193_07249: Protein of unknown function DUF419 |
Gene: HNE_0933: Protein of unknown function DUF419 |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -101 score = 50.05 sequence = CGTCAGTTCCAAGGG... Gene: OA2633_07209: Protein of unknown function DUF419 |
Protein of unknown function DUF419 |
| PF08818 |
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Gene: Jann_1587: Protein of unknown function DUF1801 |
Gene: RB2654_16736: Protein of unknown function DUF1801 |
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Gene: SPO3485: Protein of unknown function DUF1801 |
Gene: MED193_13438: Protein of unknown function DUF1801 |
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Hyphomonas neptunium ATCC 15444 Site: position = -93 score = 63.49 sequence = GCATATCCGAGGGGT... Gene: HNE_3337: Protein of unknown function DUF1801 |
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Protein of unknown function DUF1801 |
| CRON 4. | ||||||||||||||||
| thiB |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -88 score = 63.93 sequence = GTCCCACCTCGGGGT... Gene: RSP_1391: Thiamin ABC transporter, substrate-binding component |
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Jannaschia sp. CCS1 Site: position = -160 score = 52.94 sequence = TAGCGGTACCTCGGG... Gene: Jann_0330: Thiamin ABC transporter, substrate-binding component |
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Rhodobacterales bacterium HTCC2654 Site: position = -143 score = 58.83 sequence = CTGCCTCACCTCGGG... Gene: RB2654_14515: Thiamin ABC transporter, substrate-binding component |
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Oceanicola granulosus HTCC2516 Site: position = -125 score = 67.37 sequence = GCCCCACCTCGGGGT... Gene: OG2516_10591: Thiamin ABC transporter, substrate-binding component |
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Loktanella vestfoldensis SKA53 Site: position = -134 score = 62.93 sequence = GCCCCACCTCGGGGT... Gene: SKA53_12158: Thiamin ABC transporter, substrate-binding component |
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Oceanicola batsensis HTCC2597 Site: position = -147 score = 63.65 sequence = GCGCCACCTCGGGGT... Gene: OB2597_14229: Thiamin ABC transporter, substrate-binding component |
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Roseovarius nubinhibens ISM Site: position = -150 score = 55.97 sequence = TGGAGACCTCGGGGT... Gene: ISM_10586: Thiamin ABC transporter, substrate-binding component |
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*
Sulfitobacter sp. EE-36 Site: position = -135 score = 81.1 sequence = ATAAGATACCTCGGG... Gene: EE36_07818: Thiamin ABC transporter, substrate-binding component |
*2
Silicibacter TM1040 Gene: TM1040_3572: Thiamin ABC transporter, substrate-binding component Site: position = -158 score = 73.27 sequence = TCGCCCCACCTCGGG... Gene: TM1040_2818: Thiamin ABC transporter, substrate-binding component |
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Roseobacter sp. MED193 Site: position = -128 score = 66.97 sequence = GAGATACCTCGGGGT... Gene: MED193_14432: Thiamin ABC transporter, substrate-binding component |
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Thiamin ABC transporter, substrate-binding component |
| thiP |
Gene: RSP_1392: Thiamin ABC transporter, transmembrane component |
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Gene: Jann_0329: Thiamin ABC transporter, transmembrane component |
Gene: RB2654_14510: Thiamin ABC transporter, transmembrane component |
Gene: OG2516_10596: Thiamin ABC transporter, transmembrane component |
Gene: SKA53_12163: Thiamin ABC transporter, transmembrane component |
Gene: OB2597_14234: Thiamin ABC transporter, transmembrane component |
Gene: ISM_10591: Thiamin ABC transporter, transmembrane component |
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Gene: EE36_07813: Thiamin ABC transporter, transmembrane component |
Gene: TM1040_2817: Thiamin ABC transporter, transmembrane component |
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Gene: MED193_14437: Thiamin ABC transporter, transmembrane component |
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Thiamin ABC transporter, transmembrane component |
| thiQ |
Gene: RSP_1393: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
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Gene: Jann_0328: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
Gene: RB2654_14505: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
Gene: OG2516_10601: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
Gene: SKA53_12168: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
Gene: OB2597_14239: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
Gene: ISM_10596: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
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Gene: EE36_07808: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
2
Silicibacter TM1040 Gene: TM1040_0371: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ Gene: TM1040_2816: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
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Gene: MED193_14442: Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
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Thiamin ABC transporter, ATPase component / Thiamine transport ATP-binding protein thiQ |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |