Statistics of regulated genes

Genome	Genes	Operons
Azoarcus sp. EbN1	4	1
Thauera sp. MZ1T	5	3
Dechloromonas aromatica RCB	11	5
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans	6	3
Chromobacterium violaceum ATCC 12472
Neisseria meningitidis MC58
Laribacter hongkongensis HLHK9
Methylobacillus flagellatus KT
Methylotenera mobilis JLW8
Methylophilales bacterium HTCC2181

Clusters of co-Regulated Orthologous operoNs (CRONs)

Genes													Function
CRON 1.
lexA	* Azoarcus sp. EbN1 Site: position = -82 score = 5.74648 sequence = ATGTGTATAAATATACAGCA Gene: ebA3086: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Thauera sp. MZ1T Site: position = -37 score = 5.86775 sequence = GACTGTTTAAAATTACAGCC Gene: Tmz1t_2297: SOS-response repressor and protease LexA (EC 3.4.21.88)	* Dechloromonas aromatica RCB Site: position = -44 score = 6.1293 sequence = TACTGTACAAAAATACAGTC Gene: Daro_1939: SOS-response repressor and protease LexA (EC 3.4.21.88)	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	* Thiobacillus denitrificans Site: position = 125 score = 5.03145 sequence = TACTGTACGGACATACAGTA Gene: Tbd_1483: SOS-response repressor and protease LexA (EC 3.4.21.88)	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	SOS-response repressor and protease LexA (EC 3.4.21.88)
imuA	Azoarcus sp. EbN1 Gene: ebA3084: Predicted RecA/RadA recombinase	Thauera sp. MZ1T Gene: Tmz1t_2298: Predicted RecA/RadA recombinase	Dechloromonas aromatica RCB Gene: Daro_1940: Predicted RecA/RadA recombinase	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	* Thiobacillus denitrificans Site: position = -192 score = 5.91029 sequence = TACTGTATAAATCAACAGTA Gene: Tbd_0830: Predicted RecA/RadA recombinase	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	Predicted RecA/RadA recombinase
imuB	Azoarcus sp. EbN1 Gene: ebA3079: DNA polymerase-like protein PA0670	Thauera sp. MZ1T Gene: Tmz1t_2299: DNA polymerase-like protein PA0670	Dechloromonas aromatica RCB Gene: Daro_1941: DNA polymerase-like protein PA0670	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans Gene: Tbd_0829: DNA polymerase-like protein PA0670	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	DNA polymerase-like protein PA0670
dnaE2	Azoarcus sp. EbN1 Gene: ebA3077: DNA polymerase III alpha subunit (EC 2.7.7.7)	* Thauera sp. MZ1T Site: position = -25 score = 5.83682 sequence = AACTGTATTTTTATACAGTC Gene: Tmz1t_1948: DNA polymerase III alpha subunit (EC 2.7.7.7)	Dechloromonas aromatica RCB Gene: Daro_1942: DNA polymerase III alpha subunit (EC 2.7.7.7)	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans Gene: Tbd_0828: DNA polymerase III alpha subunit (EC 2.7.7.7)	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	DNA polymerase III alpha subunit (EC 2.7.7.7)
dnaQ	Azoarcus sp. EbN1 Gene: ebA4628: DNA polymerase III epsilon subunit (EC 2.7.7.7)	Thauera sp. MZ1T Gene: Tmz1t_3956: DNA polymerase III epsilon subunit (EC 2.7.7.7)	Dechloromonas aromatica RCB Gene: Daro_1907: DNA polymerase III epsilon subunit (EC 2.7.7.7)	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans Gene: Tbd_0827: DNA polymerase III epsilon subunit (EC 2.7.7.7)	Chromobacterium violaceum ATCC 12472 Gene: CV1020: DNA polymerase III epsilon subunit (EC 2.7.7.7)	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9 Gene: LHK_02526: DNA polymerase III epsilon subunit (EC 2.7.7.7)	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	DNA polymerase III epsilon subunit (EC 2.7.7.7)
CRON 2.
dinB	Azoarcus sp. EbN1	Thauera sp. MZ1T	* Dechloromonas aromatica RCB Site: position = -262 score = 5.95356 sequence = GGCTGTATATTTATACAGCC Gene: Daro_2123: DNA polymerase IV (EC 2.7.7.7)	Nitrosomonas europaea ATCC 19718 Gene: NE1219: DNA polymerase IV (EC 2.7.7.7)	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A0949: DNA polymerase IV (EC 2.7.7.7)	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT Gene: Mfla_0008: DNA polymerase IV (EC 2.7.7.7)	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	DNA polymerase IV (EC 2.7.7.7)
CRON 3.
uvrD	Azoarcus sp. EbN1	* Thauera sp. MZ1T Site: position = -20 score = 5.37152 sequence = GGCTGAATATACTTACAGCC Gene: Tmz1t_0548: ATP-dependent DNA helicase II	Dechloromonas aromatica RCB	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	* Thiobacillus denitrificans Site: position = -19 score = 6.49066 sequence = TACTGTATAAAAATACAGCA Gene: Tbd_1306: ATP-dependent DNA helicase II	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8	Methylophilales bacterium HTCC2181	ATP-dependent DNA helicase II
CRON 4.
uvrA	Azoarcus sp. EbN1 Gene: ebA3857: Excinuclease ABC subunit A	Thauera sp. MZ1T Gene: Tmz1t_3309: Excinuclease ABC subunit A	* Dechloromonas aromatica RCB Site: position = -85 score = 6.15295 sequence = TGCTGTATAAAAAAACAGCC Gene: Daro_0473: Excinuclease ABC subunit A	Nitrosomonas europaea ATCC 19718 Gene: NE2455: Excinuclease ABC subunit A	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A2229: Excinuclease ABC subunit A	Thiobacillus denitrificans Gene: Tbd_0436: Excinuclease ABC subunit A	Chromobacterium violaceum ATCC 12472 Gene: CV1893: Excinuclease ABC subunit A	Neisseria meningitidis MC58 Gene: NMB0962: Excinuclease ABC subunit A	Laribacter hongkongensis HLHK9 Gene: LHK_01605: Excinuclease ABC subunit A	Methylobacillus flagellatus KT Gene: Mfla_2426: Excinuclease ABC subunit A	Methylotenera mobilis JLW8 Gene: Mmol_2133: Excinuclease ABC subunit A	Methylophilales bacterium HTCC2181 Gene: MB2181_01620: Excinuclease ABC subunit A	Excinuclease ABC subunit A
CRON 5.
recA	Azoarcus sp. EbN1 Gene: ebA3396: Recombinase A	Thauera sp. MZ1T Gene: Tmz1t_0711: Recombinase A	* Dechloromonas aromatica RCB Site: position = -146 score = 5.81546 sequence = TACTGTATTTATACACAGTA Gene: Daro_4152: Recombinase A	Nitrosomonas europaea ATCC 19718 Gene: NE1932: Recombinase A	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A0019: Recombinase A	Thiobacillus denitrificans Gene: Tbd_2197: Recombinase A	Chromobacterium violaceum ATCC 12472 Gene: CV1607: Recombinase A	Neisseria meningitidis MC58 Gene: NMB1445: Recombinase A	Laribacter hongkongensis HLHK9 Gene: LHK_00793: Recombinase A	Methylobacillus flagellatus KT Gene: Mfla_0570: Recombinase A	Methylotenera mobilis JLW8 Gene: Mmol_1903: Recombinase A	Methylophilales bacterium HTCC2181 Gene: MB2181_02395: Recombinase A	Recombinase A
recX	Azoarcus sp. EbN1	Thauera sp. MZ1T Gene: Tmz1t_0710: Regulatory protein RecX	Dechloromonas aromatica RCB Gene: Daro_4151: Regulatory protein RecX	Nitrosomonas europaea ATCC 19718 Gene: NE1931: Regulatory protein RecX	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A0020: Regulatory protein RecX	Thiobacillus denitrificans Gene: Tbd_2198: Regulatory protein RecX	Chromobacterium violaceum ATCC 12472 Gene: CV1606: Regulatory protein RecX	Neisseria meningitidis MC58 Gene: NMB1479: Regulatory protein RecX	Laribacter hongkongensis HLHK9 Gene: LHK_00794: Regulatory protein RecX	Methylobacillus flagellatus KT Gene: Mfla_0569: Regulatory protein RecX	Methylotenera mobilis JLW8 Gene: Mmol_1904: Regulatory protein RecX	Methylophilales bacterium HTCC2181 Gene: MB2181_02390: Regulatory protein RecX	Regulatory protein RecX
CRON 6.
ruvA	Azoarcus sp. EbN1 Gene: ebA3959: Holliday junction DNA helicase RuvA	Thauera sp. MZ1T Gene: Tmz1t_3831: Holliday junction DNA helicase RuvA	* Dechloromonas aromatica RCB Site: position = -47 score = 5.71081 sequence = AACTGTGTGAAAATACAGTA Gene: Daro_4062: Holliday junction DNA helicase RuvA	Nitrosomonas europaea ATCC 19718 Gene: NE0212: Holliday junction DNA helicase RuvA	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A2720: Holliday junction DNA helicase RuvA	Thiobacillus denitrificans Gene: Tbd_2213: Holliday junction DNA helicase RuvA	Chromobacterium violaceum ATCC 12472 Gene: CV4223: Holliday junction DNA helicase RuvA	Neisseria meningitidis MC58 Gene: NMB0265: Holliday junction DNA helicase RuvA	Laribacter hongkongensis HLHK9 Gene: LHK_03111: Holliday junction DNA helicase RuvA	Methylobacillus flagellatus KT Gene: Mfla_2353: Holliday junction DNA helicase RuvA	Methylotenera mobilis JLW8 Gene: Mmol_2086: Holliday junction DNA helicase RuvA	Methylophilales bacterium HTCC2181 Gene: MB2181_01680: Holliday junction DNA helicase RuvA	Holliday junction DNA helicase RuvA
yhhT	Azoarcus sp. EbN1	Thauera sp. MZ1T	Dechloromonas aromatica RCB Gene: Daro_4061: Putative membrane protein	Nitrosomonas europaea ATCC 19718	Nitrosospira multiformis ATCC 25196	Thiobacillus denitrificans	Chromobacterium violaceum ATCC 12472	Neisseria meningitidis MC58	Laribacter hongkongensis HLHK9	Methylobacillus flagellatus KT	Methylotenera mobilis JLW8 Gene: Mmol_2085: Putative membrane protein	Methylophilales bacterium HTCC2181	Putative membrane protein
ruvB	Azoarcus sp. EbN1 Gene: ebA3958: Holliday junction DNA helicase RuvB	Thauera sp. MZ1T Gene: Tmz1t_3832: Holliday junction DNA helicase RuvB	Dechloromonas aromatica RCB Gene: Daro_4060: Holliday junction DNA helicase RuvB	Nitrosomonas europaea ATCC 19718 Gene: NE0213: Holliday junction DNA helicase RuvB	Nitrosospira multiformis ATCC 25196 Gene: Nmul_A2719: Holliday junction DNA helicase RuvB	Thiobacillus denitrificans Gene: Tbd_2211: Holliday junction DNA helicase RuvB	Chromobacterium violaceum ATCC 12472 Gene: CV4215: Holliday junction DNA helicase RuvB	Neisseria meningitidis MC58 Gene: NMB1243: Holliday junction DNA helicase RuvB	Laribacter hongkongensis HLHK9 Gene: LHK_00086: Holliday junction DNA helicase RuvB	Methylobacillus flagellatus KT Gene: Mfla_2344: Holliday junction DNA helicase RuvB	Methylotenera mobilis JLW8 Gene: Mmol_2084: Holliday junction DNA helicase RuvB	Methylophilales bacterium HTCC2181 Gene: MB2181_01685: Holliday junction DNA helicase RuvB	Holliday junction DNA helicase RuvB

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