Regulog Fur - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | FUR |
| Regulation mode: | repressor (activator) |
| Biological process: | Iron homeostasis |
| Effector: | Iron ion, (Fe2+) |
| Phylum: | Proteobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - FUR
- By TF family - FUR
- By effector - Iron ion, (Fe2+)
- By pathway - Iron homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | 11 | 7 |
| Erythrobacter sp. NAP1 | 26 | 11 |
| Novosphingobium aromaticivorans DSM 12444 | 6 | 4 |
| Sphingopyxis alaskensis RB2256 | 17 | 10 |
| Sphingobium japonicum UT26S | 45 | 13 |
| Sphingomonas wittichii RW1 | 32 | 9 |
| Zymomonas mobilis subsp. mobilis ZM4 | 14 | 9 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| omp11 |
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*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -80 score = 4.64509 sequence = ATTGAAAATCAATATCAAT Gene: ZMO0795: TonB-dependent siderophore receptor |
TonB-dependent siderophore receptor |
| CRON 2. | ||||||||
| omp12 |
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*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -75 score = 4.31716 sequence = ATTGACAATCAATATCAAT Gene: ZMO1631: TonB-dependent siderophore receptor |
TonB-dependent siderophore receptor |
| ZMO1630 |
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Gene: ZMO1630: Hypothetical protein |
Hypothetical protein |
| ZMO1629 |
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Gene: ZMO1629: Hypothetical protein |
Hypothetical protein |
| COG3182 |
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Gene: ZMO1628: PepSY-associated TM helix domain protein |
PepSY-associated TM helix domain protein |
| CRON 3. | ||||||||
| PF03929 |
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*
Sphingobium japonicum UT26S Site: position = -61 score = 5.11822 sequence = ATTGCGAGTCGTTCGCGTT Gene: SJA_C1-09170: PepSY-associated TM helix domain protein |
*
Sphingomonas wittichii RW1 Site: position = -93 score = 5.84662 sequence = ATTGCGAACAGTTCGCATT Gene: Swit_0430: PepSY-associated TM helix domain protein |
|
PepSY-associated TM helix domain protein |
| COG3656 |
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Gene: SJA_C1-09160: Periplasmic-like protein |
Gene: Swit_0429: Periplasmic-like protein |
|
Periplasmic-like protein |
| SJA_C1-09150 |
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Gene: SJA_C1-09150: Putative exported protein |
Gene: Swit_0428: Putative exported protein |
|
Putative exported protein |
| apbE |
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Gene: SJA_C1-09140: ApbE family lipoprotein |
Gene: Swit_0427: ApbE family lipoprotein |
|
ApbE family lipoprotein |
| CRON 4. | ||||||||
| ELI_08285 |
*
Erythrobacter litoralis HTCC2594 Site: position = -127 score = 5.00771 sequence = GTTGCAACTCATTCTCATT Gene: ELI_08285: Hypothetical protein |
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*
Sphingobium japonicum UT26S Site: position = -63 score = 5.08794 sequence = CTTGCGATTGACTCGCAAT Gene: SJA_C1-21400: Hypothetical protein |
*
Sphingomonas wittichii RW1 Site: position = -62 score = 5.643 sequence = ATTGCGATTGACTCGCAAT Gene: Swit_2730: Hypothetical protein |
|
Hypothetical protein |
| CRON 5. | ||||||||
| tonB |
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*
Sphingobium japonicum UT26S Site: position = -72 score = 4.68375 sequence = GATGCGATTGAGTAGCATT Gene: SJA_C1-10330: Ferric siderophore transport system, periplasmic binding protein TonB |
*
Sphingomonas wittichii RW1 Site: position = -56 score = 5.28779 sequence = ATTGCGATTGATTTGCACT Gene: Swit_4047: Ferric siderophore transport system, periplasmic binding protein TonB |
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Ferric siderophore transport system, periplasmic binding protein TonB |
| piuC |
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Gene: SJA_C1-10340: Iron-uptake factor PiuC |
Gene: Swit_4046: Iron-uptake factor PiuC |
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Iron-uptake factor PiuC |
| CRON 6. | ||||||||
| pbuA |
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*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -208 score = 4.55714 sequence = TATGATATTGATTTGCAAT Gene: ZMO0188: Ferric-pseudobactin M114 receptor pbuA precursor |
Ferric-pseudobactin M114 receptor pbuA precursor |
| CRON 7. | ||||||||
| omp10 |
*
Erythrobacter litoralis HTCC2594 Site: position = -60 score = 4.92277 sequence = ATTGCGAATACGTCTCAAT Gene: ELI_04405: TonB-dependent siderophore receptor |
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TonB-dependent siderophore receptor |
| CRON 8. | ||||||||
| NAP1_11718 |
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*
Erythrobacter sp. NAP1 Site: position = -56 score = 5.10569 sequence = ATTGCGAAGCGCTTGCAAT Gene: NAP1_11718: Hypothetical protein |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -73 score = 5.57767 sequence = AATGAGAACGATTCGCATT Gene: Saro_0968: Hypothetical protein |
*
Sphingopyxis alaskensis RB2256 Site: position = -144 score = 5.47782 sequence = ATTGCGATTAATTCTCAAT Gene: Sala_0587: Hypothetical protein |
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|
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Hypothetical protein |
| CRON 9. | ||||||||
| feoA |
*
Erythrobacter litoralis HTCC2594 Site: position = -47 score = 5.32309 sequence = ATTGAGAATGAGTTGCAAT Gene: ELI_00185: Ferrous iron transport protein A |
|
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -47 score = 5.66075 sequence = ATTGCGAACGACTTGCAAT Gene: Saro_2850: Ferrous iron transport protein A |
*
Sphingopyxis alaskensis RB2256 Site: position = -27 score = 5.03174 sequence = ATTGATAATCGCTCGCAAA Gene: Sala_2986: Ferrous iron transport protein A |
*
Sphingobium japonicum UT26S Site: position = -24 score = 4.51076 sequence = ATTGATAGTCACTCGCAGA Gene: SJA_C1-02970: Ferrous iron transport protein A |
*
Sphingomonas wittichii RW1 Site: position = -19 score = 4.83325 sequence = ATTGATAATCACTCGCAGC Gene: Swit_2450: Ferrous iron transport protein A |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -158 score = 4.2292 sequence = ATTGATAAGCAGTTGCATT Gene: ZMO1540: Ferrous iron transport protein A |
Ferrous iron transport protein A |
| feoB |
Gene: ELI_00190: Ferrous iron transport protein B |
|
Gene: Saro_2849: Ferrous iron transport protein B |
Gene: Sala_2987: Ferrous iron transport protein B |
Gene: SJA_C1-02980: Ferrous iron transport protein B |
Gene: Swit_2451: Ferrous iron transport protein B |
Gene: ZMO1541: Ferrous iron transport protein B |
Ferrous iron transport protein B |
| CRON 10. | ||||||||
| omp1 |
*
Erythrobacter litoralis HTCC2594 Site: position = -64 score = 5.47782 sequence = ATTGCGACTTATTCTCAAT Site: position = -30 score = 4.67705 sequence = ATCGAGAATCGTTCGCAAG Gene: ELI_00385: TonB-dependent siderophore receptor |
*
Erythrobacter sp. NAP1 Site: position = -77 score = 5.24771 sequence = TTTGAGAACAATTCTCAAT Site: position = -46 score = 4.81391 sequence = TATGAGAATAGTTTTCAAT Gene: NAP1_15908: TonB-dependent siderophore receptor |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -35 score = 5.20581 sequence = AGTGCGATTGAGTCGCAAT Site: position = -66 score = 5.05373 sequence = ATTGCGAAAAATTCTCAAA Gene: Saro_3280: TonB-dependent siderophore receptor |
*
Sphingopyxis alaskensis RB2256 Site: position = 52 score = 4.98728 sequence = GTTGCAATTCGCTCGCATT Gene: Sala_2091: TonB-dependent siderophore receptor |
|
|
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -36 score = 4.76803 sequence = ATTGCGAGACATTATCAAT Gene: ZMO1822: TonB-dependent siderophore receptor |
TonB-dependent siderophore receptor |
| CRON 11. | ||||||||
| mdh |
*
Erythrobacter litoralis HTCC2594 Site: position = -177 score = 5.40762 sequence = ATTGCGAACTATTTGCATA Gene: ELI_07980: Malate dehydrogenase (EC 1.1.1.37) |
*
Erythrobacter sp. NAP1 Site: position = -172 score = 4.90436 sequence = ATTGCGAACTATTTGCGAA Gene: NAP1_07210: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Saro_1182: Malate dehydrogenase (EC 1.1.1.37) |
*
Sphingopyxis alaskensis RB2256 Site: position = -173 score = 5.10219 sequence = ATTGCGAACTAATAGCAAA Gene: Sala_2230: Malate dehydrogenase (EC 1.1.1.37) |
*
Sphingobium japonicum UT26S Site: position = -117 score = 5.06067 sequence = ACTGCGAATGAATTGCAAA Gene: SJA_C1-24340: Malate dehydrogenase (EC 1.1.1.37) |
Gene: Swit_1300: Malate dehydrogenase (EC 1.1.1.37) |
Gene: ZZM4_0073: Malate dehydrogenase (EC 1.1.1.37) |
Malate dehydrogenase (EC 1.1.1.37) |
| CRON 12. | ||||||||
| bfd |
*
Erythrobacter litoralis HTCC2594 Site: position = -59 score = 5.32264 sequence = ATTGAGAACTGTTCGCATA Site: position = -32 score = 4.55882 sequence = CTTGCGAATCACTCGCAGG Gene: ELI_01070: Bacterioferritin-associated ferredoxin |
*
Erythrobacter sp. NAP1 Site: position = -62 score = 4.38322 sequence = ATTGAGAAAGAGTTGCATA Gene: NAP1_00235: Bacterioferritin-associated ferredoxin |
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*
Sphingobium japonicum UT26S Site: position = -82 score = 4.44664 sequence = AACGCAAAAGATTCGCAAC Site: position = -48 score = 4.71707 sequence = ATTGCGACCTATTATCATC Gene: SJA_C1-23930: Bacterioferritin-associated ferredoxin |
*
Sphingomonas wittichii RW1 Site: position = -50 score = 4.6889 sequence = ATTGATAGTCAGTTGCAAT Gene: Swit_3138: Bacterioferritin-associated ferredoxin |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -84 score = 4.19677 sequence = ATTGATACTTGTTATCATT Gene: ZMO2019: Bacterioferritin-associated ferredoxin |
Bacterioferritin-associated ferredoxin |
| bfr |
Gene: ELI_01075: Bacterioferritin |
Gene: NAP1_00240: Bacterioferritin |
|
*
Sphingopyxis alaskensis RB2256 Site: position = -353 score = 5.18429 sequence = ACTGCGAACCAGTCGCATC Site: position = -292 score = 4.68526 sequence = GTTGAGAAGGATTCGCACA Site: position = -328 score = 4.85115 sequence = GTTGCGAATCTGTCGCACT Gene: Sala_0588: Bacterioferritin |
Gene: SJA_C1-23940: Bacterioferritin |
Gene: Swit_3139: Bacterioferritin |
Gene: ZMO1410: Bacterioferritin |
Bacterioferritin |
| CRON 13. | ||||||||
| omp4 |
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*
Sphingobium japonicum UT26S Site: position = -58 score = 5.15118 sequence = TCTGCGAACAAGTCGCAAT Site: position = -86 score = 4.51824 sequence = AATAATAATTAGTCGCAAT Gene: SJA_C1-10320: TonB-dependent siderophore receptor |
*
Sphingomonas wittichii RW1 Site: position = -85 score = 4.94347 sequence = AATGAGAATCATTCTCAGA Site: position = -61 score = 5.09597 sequence = TTTGCGATTCATTTTCAAT Gene: Swit_3225: TonB-dependent siderophore receptor |
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TonB-dependent siderophore receptor |
| CRON 14. | ||||||||
| omp3 |
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*
Sphingomonas wittichii RW1 Site: position = -72 score = 5.07741 sequence = ATTGCGTTTGATTCGCATT Gene: Swit_3561: TonB-dependent siderophore receptor |
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TonB-dependent siderophore receptor |
| omp2 |
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*
Sphingopyxis alaskensis RB2256 Site: position = -62 score = 5.18319 sequence = AATGCAACTAATTCGCATT Gene: Sala_0947: TonB-dependent siderophore receptor |
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Gene: Swit_3560: TonB-dependent siderophore receptor |
|
TonB-dependent siderophore receptor |
| CRON 15. | ||||||||
| hemA |
*
Erythrobacter litoralis HTCC2594 Site: position = -70 score = 5.71164 sequence = GATGCGAATCATTCGCAAA Gene: ELI_04785: 5-aminolevulinate synthase (EC 2.3.1.37) |
*
Erythrobacter sp. NAP1 Site: position = -195 score = 5.10148 sequence = ACTGCAAATCGCTCGCAAA Gene: NAP1_03945: 5-aminolevulinate synthase (EC 2.3.1.37) |
Gene: Saro_1797: 5-aminolevulinate synthase (EC 2.3.1.37) |
*
Sphingopyxis alaskensis RB2256 Site: position = -117 score = 5.52561 sequence = ACTGCGAATCGTTCGCACT Gene: Sala_1206: 5-aminolevulinate synthase (EC 2.3.1.37) |
*
Sphingobium japonicum UT26S Site: position = -63 score = 4.37264 sequence = GCTGCGAGCGGTTATCACT Gene: SJA_C1-17200: 5-aminolevulinate synthase (EC 2.3.1.37) |
*
Sphingomonas wittichii RW1 Site: position = -96 score = 5.23297 sequence = ATTGGGAATCGTTCGCACT Gene: Swit_3823: 5-aminolevulinate synthase (EC 2.3.1.37) |
Gene: ZMO1198: 5-aminolevulinate synthase (EC 2.3.1.37) |
5-aminolevulinate synthase (EC 2.3.1.37) |
| ELI_04780 |
Gene: ELI_04780: Hypothetical protein |
|
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Gene: Sala_1423: Hypothetical protein |
|
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Hypothetical protein |
| ELI_04775 |
Gene: ELI_04775: Putative nitroreductase |
Gene: NAP1_03930: Putative nitroreductase |
Gene: Saro_1796: Putative nitroreductase |
Gene: Sala_1205: Putative nitroreductase |
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Putative nitroreductase |
| CRON 16. | ||||||||
| iscR |
Gene: ELI_12790: Iron-sulfur cluster regulator IscR |
*
Erythrobacter sp. NAP1 Site: position = -39 score = 4.89867 sequence = TTTAAGAATGACTCGCAAC Gene: NAP1_13233: Iron-sulfur cluster regulator IscR |
Gene: Saro_0194: Iron-sulfur cluster regulator IscR |
*
Sphingopyxis alaskensis RB2256 Site: position = -34 score = 5.15692 sequence = GTTAAGAATCGTTCGCAAC Gene: Sala_0675: Iron-sulfur cluster regulator IscR |
*
Sphingobium japonicum UT26S Site: position = -29 score = 5.11088 sequence = TTTGAGAATGGTTCGCAAG Gene: SJA_C1-34000: Iron-sulfur cluster regulator IscR |
Gene: Swit_2919: Iron-sulfur cluster regulator IscR |
Gene: ZMO0422: Iron-sulfur cluster regulator IscR |
Iron-sulfur cluster regulator IscR |
| sufB |
Gene: ELI_12785: Iron-sulfur cluster assembly protein SufB |
Gene: NAP1_13238: Iron-sulfur cluster assembly protein SufB |
Gene: Saro_0195: Iron-sulfur cluster assembly protein SufB |
Gene: Sala_0674: Iron-sulfur cluster assembly protein SufB |
Gene: SJA_C1-33990: Iron-sulfur cluster assembly protein SufB |
Gene: Swit_2918: Iron-sulfur cluster assembly protein SufB |
Gene: ZMO0423: Iron-sulfur cluster assembly protein SufB |
Iron-sulfur cluster assembly protein SufB |
| NAP1_13243 |
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Gene: NAP1_13243: Acetyltransferase, GNAT family |
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Gene: Sala_0672: Acetyltransferase, GNAT family |
|
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Acetyltransferase, GNAT family |
| ELI_12765 |
Gene: ELI_12765: Hypothetical protein |
Gene: NAP1_13248: Hypothetical protein |
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Hypothetical protein |
| sufC |
Gene: ELI_12760: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: NAP1_13253: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: Saro_0197: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: Sala_0671: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: SJA_C1-33960: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: Swit_2917: Iron-sulfur cluster assembly ATPase protein SufC |
Gene: ZMO0425: Iron-sulfur cluster assembly ATPase protein SufC |
Iron-sulfur cluster assembly ATPase protein SufC |
| NAP1_13258 |
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Gene: NAP1_13258: Hypothetical protein |
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Hypothetical protein |
| sufD |
Gene: ELI_12755: Iron-sulfur cluster assembly protein SufD |
Gene: NAP1_13263: Iron-sulfur cluster assembly protein SufD |
Gene: Saro_0198: Iron-sulfur cluster assembly protein SufD |
Gene: Sala_0670: Iron-sulfur cluster assembly protein SufD |
Gene: SJA_C1-33950: Iron-sulfur cluster assembly protein SufD |
Gene: Swit_2916: Iron-sulfur cluster assembly protein SufD |
Gene: ZMO0426: Iron-sulfur cluster assembly protein SufD |
Iron-sulfur cluster assembly protein SufD |
| sufS |
Gene: ELI_12750: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: NAP1_13268: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Saro_0199: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Sala_0669: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: SJA_C1-33940: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: Swit_2915: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Gene: ZMO0427: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily |
| ELI_12745 |
Gene: ELI_12745: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: NAP1_13273: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: Saro_0200: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: Sala_0668: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: SJA_C1-33930: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: Swit_2914: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
Gene: ZMO0428: PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
PaaD-like protein (DUF59) involved in Fe-S cluster assembly |
| sufA |
Gene: ELI_12740: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: NAP1_13278: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Saro_0201: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Sala_0667: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: SJA_C1-33920: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: Swit_2913: Iron binding protein SufA for iron-sulfur cluster assembly |
Gene: ZMO0429: Iron binding protein SufA for iron-sulfur cluster assembly |
Iron binding protein SufA for iron-sulfur cluster assembly |
| Sala_0673 |
|
|
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Gene: Sala_0673: DNA methylase, putative |
Gene: SJA_C1-33980: DNA methylase, putative |
|
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DNA methylase, putative |
| SJA_C1-33970 |
|
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Gene: SJA_C1-33970: Hypothetical protein |
|
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Hypothetical protein |
| ELI_13620 |
Gene: ELI_13620: Nucleoside-diphosphate-sugar epimerases |
Gene: NAP1_12473: Nucleoside-diphosphate-sugar epimerases |
Gene: Saro_3269: Nucleoside-diphosphate-sugar epimerases |
Gene: Sala_0474: Nucleoside-diphosphate-sugar epimerases |
Gene: SJA_C1-33910: Nucleoside-diphosphate-sugar epimerases |
Gene: Swit_2753: Nucleoside-diphosphate-sugar epimerases |
|
Nucleoside-diphosphate-sugar epimerases |
| CRON 17. | ||||||||
| sufS2 |
Gene: ELI_02190: Cysteine desulfurase (EC 2.8.1.7) |
*
Erythrobacter sp. NAP1 Site: position = -82 score = 4.77756 sequence = ATCGAGAATCGTTCTCATT Gene: NAP1_01435: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Saro_2798: Cysteine desulfurase (EC 2.8.1.7) |
|
Gene: SJA_C1-21750: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Swit_0051: Cysteine desulfurase (EC 2.8.1.7) |
|
Cysteine desulfurase (EC 2.8.1.7) |
| NAP1_01440 |
|
Gene: NAP1_01440: Hypothetical protein |
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|
|
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Hypothetical protein |
| sufS |
Gene: ELI_02200: Cysteine desulfurase (EC 2.8.1.7) |
Gene: NAP1_01445: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Saro_2797: Cysteine desulfurase (EC 2.8.1.7) |
*
Sphingopyxis alaskensis RB2256 Site: position = -36 score = 5.84142 sequence = TTTGCGAATTGTTCGCAAT Gene: Sala_0794: Cysteine desulfurase (EC 2.8.1.7) |
Gene: SJA_C1-21740: Cysteine desulfurase (EC 2.8.1.7) |
Gene: Swit_0052: Cysteine desulfurase (EC 2.8.1.7) |
Gene: ZMO0859: Cysteine desulfurase (EC 2.8.1.7) |
Cysteine desulfurase (EC 2.8.1.7) |
| fdx |
Gene: ELI_02205: Ferredoxin, 2Fe-2S |
Gene: NAP1_01450: Ferredoxin, 2Fe-2S |
Gene: Saro_2796: Ferredoxin, 2Fe-2S |
Gene: Sala_0795: Ferredoxin, 2Fe-2S |
Gene: SJA_C1-21730: Ferredoxin, 2Fe-2S |
Gene: Swit_0053: Ferredoxin, 2Fe-2S |
Gene: ZMO0860: Ferredoxin, 2Fe-2S |
Ferredoxin, 2Fe-2S |
| CRON 18. | ||||||||
| adhA |
|
|
|
Gene: Sala_2455: Alcohol dehydrogenase (EC 1.1.1.1) |
Gene: SJA_C1-05070: Alcohol dehydrogenase (EC 1.1.1.1) |
|
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -241 score = 4.59951 sequence = TTTGCAAATGATTTTTATT Gene: ZMO1236: Alcohol dehydrogenase (EC 1.1.1.1) |
Alcohol dehydrogenase (EC 1.1.1.1) |
| CRON 19. | ||||||||
| tonB2 |
Gene: ELI_02180: Ferric siderophore transport system, periplasmic binding protein TonB |
*
Erythrobacter sp. NAP1 Site: position = -141 score = 5.64622 sequence = ATTGCGAACAGGTCGCAAT Gene: NAP1_01425: Ferric siderophore transport system, periplasmic binding protein TonB |
|
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|
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Ferric siderophore transport system, periplasmic binding protein TonB |
| CRON 20. | ||||||||
| dps |
Gene: ELI_09930: DNA-binding ferritin-like protein (oxidative damage protectant) |
*
Erythrobacter sp. NAP1 Site: position = -40 score = 5.6195 sequence = TTTGCGAACAGTTCGCATT Gene: NAP1_10333: DNA-binding ferritin-like protein (oxidative damage protectant) |
Gene: Saro_2646: DNA-binding ferritin-like protein (oxidative damage protectant) |
Gene: Sala_2366: DNA-binding ferritin-like protein (oxidative damage protectant) |
Gene: SJA_C1-01050: DNA-binding ferritin-like protein (oxidative damage protectant) |
Gene: Swit_2779: DNA-binding ferritin-like protein (oxidative damage protectant) |
|
DNA-binding ferritin-like protein (oxidative damage protectant) |
| CRON 21. | ||||||||
| SJA_C1-04740 |
|
|
|
|
*
Sphingobium japonicum UT26S Site: position = -147 score = 5.57767 sequence = GTTGAGAACGATTCGCAAC Gene: SJA_C1-04740: Hypothetical protein |
|
|
Hypothetical protein |
| CRON 22. | ||||||||
| nuoA |
Gene: ELI_06695: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) |
Gene: NAP1_05930: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) |
Gene: Saro_2303: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) |
Gene: Sala_1311: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) |
*
Sphingobium japonicum UT26S Site: position = -91 score = 5.08684 sequence = GTTGCGAATCATTCTCATG Gene: SJA_C1-13210: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) |
*
Sphingomonas wittichii RW1 Site: position = -104 score = 5.46744 sequence = GTTGCGAATCATTCTCACT Gene: Swit_2982: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) |
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NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) |
| nuoB |
Gene: ELI_06690: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) |
Gene: NAP1_05925: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) |
Gene: Saro_2302: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) |
Gene: Sala_1310: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) |
Gene: SJA_C1-13220: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) |
Gene: Swit_2983: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) |
|
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) |
| nuoC |
Gene: ELI_06685: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) |
Gene: NAP1_05915: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) |
Gene: Saro_2301: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) |
Gene: Sala_1309: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) |
Gene: SJA_C1-13230: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) |
Gene: Swit_2984: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) |
|
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) |
| nuoD |
Gene: ELI_06675: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) |
Gene: NAP1_05910: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) |
Gene: Saro_2300: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) |
Gene: Sala_1308: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) |
Gene: SJA_C1-13240: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) |
Gene: Swit_2985: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) |
|
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) |
| nuoE |
Gene: ELI_06665: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) |
Gene: NAP1_05905: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) |
Gene: Saro_2296: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) |
Gene: Sala_1306: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) |
Gene: SJA_C1-13260: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) |
Gene: Swit_2986: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) |
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NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3) |
| Swit_2987 |
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Gene: Swit_2987: Hypothetical protein |
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Hypothetical protein |
| nuoF |
Gene: ELI_06650: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) |
Gene: NAP1_05895: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) |
Gene: Saro_2295: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) |
Gene: Sala_1305: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) |
Gene: SJA_C1-13270: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) |
Gene: Swit_2988: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) |
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NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3) |
| Swit_2989 |
|
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Gene: Swit_2989: Hypothetical protein |
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Hypothetical protein |
| Swit_2990 |
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Gene: Swit_2990: Hypothetical protein |
|
Hypothetical protein |
| nuoG |
Gene: ELI_06640: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) |
Gene: NAP1_05885: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) |
Gene: Saro_2294: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) |
Gene: Sala_1303: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) |
Gene: SJA_C1-13290: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) |
Gene: Swit_2991: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) |
|
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) |
| nuoH |
Gene: ELI_06630: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) |
Gene: NAP1_05880: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) |
Gene: Saro_2293: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) |
Gene: Sala_1302: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) |
Gene: SJA_C1-13300: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) |
Gene: Swit_2992: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) |
|
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3) |
| nuoI |
Gene: ELI_06625: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) |
Gene: NAP1_05875: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) |
Gene: Saro_2292: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) |
Gene: Sala_1301: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) |
Gene: SJA_C1-13310: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) |
Gene: Swit_2993: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) |
|
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) |
| nuoJ |
Gene: ELI_06620: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) |
Gene: NAP1_05870: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) |
Gene: Saro_2291: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) |
Gene: Sala_1300: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) |
Gene: SJA_C1-13320: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) |
Gene: Swit_2994: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) |
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NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3) |
| nuoK |
Gene: ELI_06615: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) |
Gene: NAP1_05865: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) |
Gene: Saro_2290: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) |
Gene: Sala_1299: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) |
Gene: SJA_C1-13330: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) |
Gene: Swit_2995: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) |
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NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3) |
| nuoL |
Gene: ELI_06610: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) |
Gene: NAP1_05860: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) |
Gene: Saro_2289: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) |
Gene: Sala_1298: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) |
Gene: SJA_C1-13340: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) |
Gene: Swit_2996: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) |
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NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) |
| nuoM |
Gene: ELI_06605: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) |
Gene: NAP1_05855: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) |
Gene: Saro_2288: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) |
Gene: Sala_1297: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) |
Gene: SJA_C1-13350: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) |
Gene: Swit_2997: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) |
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NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) |
| nuoN |
Gene: ELI_06600: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
Gene: NAP1_05850: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
Gene: Saro_2287: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
Gene: Sala_1296: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
Gene: SJA_C1-13360: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
Gene: Swit_2998: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
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NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3) |
| SJA_C1-13250 |
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Gene: SJA_C1-13250: Hypothetical protein |
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Hypothetical protein |
| Sala_1304 |
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Gene: Sala_1304: hypothetical protein |
Gene: SJA_C1-13280: hypothetical protein |
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|
hypothetical protein |
| CRON 23. | ||||||||
| omp5 |
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*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -161 score = 5.32309 sequence = ATTGAAAATCAATCGCAAT Gene: ZMO1568: TonB-dependent siderophore receptor |
TonB-dependent siderophore receptor |
| CRON 24. | ||||||||
| omp6 |
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*
Sphingobium japonicum UT26S Site: position = -124 score = 5.06107 sequence = ATTGCGAGTTATTCGCGTT Gene: SJA_C1-03790: TonB-dependent siderophore receptor |
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TonB-dependent siderophore receptor |
| SJA_C1-03780 |
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Gene: SJA_C1-03780: Hypothetical protein |
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Hypothetical protein |
| COG3182 |
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Gene: Sala_0946: PepSY-associated TM helix domain protein |
Gene: SJA_C1-03770: PepSY-associated TM helix domain protein |
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PepSY-associated TM helix domain protein |
| CRON 25. | ||||||||
| omp9 |
|
*
Erythrobacter sp. NAP1 Site: position = -82 score = 5.0278 sequence = CTTGCGAGTAATTCTCAAT Site: position = -51 score = 4.71537 sequence = TTTGCGAGTCATTGTCATT Gene: NAP1_15918: TonB-dependent siderophore receptor |
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TonB-dependent siderophore receptor |
| NAP1_15913 |
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Gene: NAP1_15913: Hypothetical protein |
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Hypothetical protein |
| CRON 26. | ||||||||
| omp8 |
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*
Novosphingobium aromaticivorans DSM 12444 Site: position = -81 score = 5.04669 sequence = AATGCGAATGATTCTTAGT Site: position = -52 score = 4.75279 sequence = CTTGAGAACGACTCGCACT Gene: Saro_1823: TonB-dependent siderophore receptor |
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TonB-dependent siderophore receptor |
| Saro_1822 |
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Gene: Saro_1822: Hypothetical protein |
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Hypothetical protein |
| CRON 27. | ||||||||
| NAP1_09252 |
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*
Erythrobacter sp. NAP1 Site: position = -38 score = 5.42297 sequence = ATTGCAAATCATTCGCAAG Gene: NAP1_09252: Ferric iron ABC transporter, iron-binding protein |
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Ferric iron ABC transporter, iron-binding protein |
| fpr |
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Gene: NAP1_09247: Ferredoxin-NADP reductase |
|
*
Sphingopyxis alaskensis RB2256 Site: position = -190 score = 5.01169 sequence = ATTGCAAATGAGTTGCACT Gene: Sala_1032: Ferredoxin-NADP reductase |
*
Sphingobium japonicum UT26S Site: position = -52 score = 4.07233 sequence = ATTGCGAAGCCCACGCAAC Gene: SJA_C1-10850: Ferredoxin-NADP reductase |
Gene: Swit_0104: Ferredoxin-NADP reductase |
*
Zymomonas mobilis subsp. mobilis ZM4 Site: position = -273 score = 5.2507 sequence = ATTGAGATTTATTCGCAAA Gene: ZMO1753: Ferredoxin-NADP reductase |
Ferredoxin-NADP reductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |