Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Fur in Sphingobium japonicum UT26S

Properties
Regulator type: Transcription factor
TF locus tag: SJA_C1-20540
Regulator family: FUR
Regulation mode: repressor (activator)
Biological process: Iron homeostasis
Effector: Iron ion, (Fe2+)
Regulog: Fur - Sphingomonadales
Statistics of regulated genes:
- Genes 45
- Operons 13
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 74 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -72
Score: 4.7
Sequence: GATGCGATTGAGTAGCATT
Locus tag: SJA_C1-10330
Name: tonB
Funciton: Ferric siderophore transport system, periplasmic binding protein TonB
Locus tag: SJA_C1-10340
Name: piuC
Funciton: Iron-uptake factor PiuC
SJA_C1-10330
tonB
Ferric siderophore transport system, periplasmic binding protein TonB
SJA_C1-10340
piuC
Iron-uptake factor PiuC
Position: -63
Score: 5.1
Sequence: CTTGCGATTGACTCGCAAT
Locus tag: SJA_C1-21400
Name: null
Funciton: Hypothetical protein
SJA_C1-21400
Hypothetical protein
Position: -63
Score: 4.4
Sequence: GCTGCGAGCGGTTATCACT
Locus tag: SJA_C1-17200
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
SJA_C1-17200
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -124
Score: 5.1
Sequence: ATTGCGAGTTATTCGCGTT
Locus tag: SJA_C1-03790
Name: omp6
Funciton: TonB-dependent siderophore receptor
Locus tag: SJA_C1-03780
Name: null
Funciton: Hypothetical protein
Locus tag: SJA_C1-03770
Name: COG3182
Funciton: PepSY-associated TM helix domain protein
SJA_C1-03790
omp6
TonB-dependent siderophore receptor
SJA_C1-03780
Hypothetical protein
SJA_C1-03770
COG3182
PepSY-associated TM helix domain protein
Position: -91
Score: 5.1
Sequence: GTTGCGAATCATTCTCATG
Locus tag: SJA_C1-13210
Name: nuoA
Funciton: NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
Locus tag: SJA_C1-13220
Name: nuoB
Funciton: NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
Locus tag: SJA_C1-13230
Name: nuoC
Funciton: NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
Locus tag: SJA_C1-13240
Name: nuoD
Funciton: NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
Locus tag: SJA_C1-13250
Name: null
Funciton: Hypothetical protein
Locus tag: SJA_C1-13260
Name: nuoE
Funciton: NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
Locus tag: SJA_C1-13270
Name: nuoF
Funciton: NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
Locus tag: SJA_C1-13280
Name: null
Funciton: hypothetical protein
Locus tag: SJA_C1-13290
Name: nuoG
Funciton: NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
Locus tag: SJA_C1-13300
Name: nuoH
Funciton: NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
Locus tag: SJA_C1-13310
Name: nuoI
Funciton: NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
Locus tag: SJA_C1-13320
Name: nuoJ
Funciton: NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
Locus tag: SJA_C1-13330
Name: nuoK
Funciton: NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
Locus tag: SJA_C1-13340
Name: nuoL
Funciton: NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
Locus tag: SJA_C1-13350
Name: nuoM
Funciton: NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
Locus tag: SJA_C1-13360
Name: nuoN
Funciton: NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
SJA_C1-13210
nuoA
NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3)
SJA_C1-13220
nuoB
NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3)
SJA_C1-13230
nuoC
NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)
SJA_C1-13240
nuoD
NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3)
SJA_C1-13250
Hypothetical protein
SJA_C1-13260
nuoE
NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3)
SJA_C1-13270
nuoF
NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3)
SJA_C1-13280
hypothetical protein
SJA_C1-13290
nuoG
NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3)
SJA_C1-13300
nuoH
NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3)
SJA_C1-13310
nuoI
NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3)
SJA_C1-13320
nuoJ
NADH-ubiquinone oxidoreductase chain J (EC 1.6.5.3)
SJA_C1-13330
nuoK
NADH-ubiquinone oxidoreductase chain K (EC 1.6.5.3)
SJA_C1-13340
nuoL
NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)
SJA_C1-13350
nuoM
NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3)
SJA_C1-13360
nuoN
NADH-ubiquinone oxidoreductase chain N (EC 1.6.5.3)
Position: -147
Score: 5.6
Sequence: GTTGAGAACGATTCGCAAC
Locus tag: SJA_C1-04740
Name: null
Funciton: Hypothetical protein
SJA_C1-04740
Hypothetical protein
Position: -29
Score: 5.1
Sequence: TTTGAGAATGGTTCGCAAG
Locus tag: SJA_C1-34000
Name: iscR
Funciton: Iron-sulfur cluster regulator IscR
Locus tag: SJA_C1-33990
Name: sufB
Funciton: Iron-sulfur cluster assembly protein SufB
Locus tag: SJA_C1-33980
Name: null
Funciton: DNA methylase, putative
Locus tag: SJA_C1-33970
Name: null
Funciton: Hypothetical protein
Locus tag: SJA_C1-33960
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein SufC
Locus tag: SJA_C1-33950
Name: sufD
Funciton: Iron-sulfur cluster assembly protein SufD
Locus tag: SJA_C1-33940
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: SJA_C1-33930
Name: null
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: SJA_C1-33920
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
Locus tag: SJA_C1-33910
Name: null
Funciton: Nucleoside-diphosphate-sugar epimerases
SJA_C1-34000
iscR
Iron-sulfur cluster regulator IscR
SJA_C1-33990
sufB
Iron-sulfur cluster assembly protein SufB
SJA_C1-33980
DNA methylase, putative
SJA_C1-33970
Hypothetical protein
SJA_C1-33960
sufC
Iron-sulfur cluster assembly ATPase protein SufC
SJA_C1-33950
sufD
Iron-sulfur cluster assembly protein SufD
SJA_C1-33940
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
SJA_C1-33930
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
SJA_C1-33920
sufA
Iron binding protein SufA for iron-sulfur cluster assembly
SJA_C1-33910
Nucleoside-diphosphate-sugar epimerases
Position: -82
Score: 4.4
Sequence: AACGCAAAAGATTCGCAAC
Position: -48
Score: 4.7
Sequence: ATTGCGACCTATTATCATC
Locus tag: SJA_C1-23930
Name: bfd
Funciton: Bacterioferritin-associated ferredoxin
Locus tag: SJA_C1-23940
Name: bfr
Funciton: Bacterioferritin
SJA_C1-23930
bfd
Bacterioferritin-associated ferredoxin
SJA_C1-23940
bfr
Bacterioferritin
Position: -86
Score: 4.5
Sequence: AATAATAATTAGTCGCAAT
Position: -58
Score: 5.2
Sequence: TCTGCGAACAAGTCGCAAT
Locus tag: SJA_C1-10320
Name: omp4
Funciton: TonB-dependent siderophore receptor
SJA_C1-10320
omp4
TonB-dependent siderophore receptor
Position: -24
Score: 4.5
Sequence: ATTGATAGTCACTCGCAGA
Locus tag: SJA_C1-02970
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: SJA_C1-02980
Name: feoB
Funciton: Ferrous iron transport protein B
SJA_C1-02970
feoA
Ferrous iron transport protein A
SJA_C1-02980
feoB
Ferrous iron transport protein B
Position: -117
Score: 5.1
Sequence: ACTGCGAATGAATTGCAAA
Locus tag: SJA_C1-24340
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
SJA_C1-24340
mdh
Malate dehydrogenase (EC 1.1.1.37)
Position: -52
Score: 4.1
Sequence: ATTGCGAAGCCCACGCAAC
Locus tag: SJA_C1-10850
Name: fpr
Funciton: Ferredoxin-NADP reductase
SJA_C1-10850
fpr
Ferredoxin-NADP reductase
Position: -61
Score: 5.1
Sequence: ATTGCGAGTCGTTCGCGTT
Locus tag: SJA_C1-09170
Name: PF03929
Funciton: PepSY-associated TM helix domain protein
Locus tag: SJA_C1-09160
Name: COG3656
Funciton: Periplasmic-like protein
Locus tag: SJA_C1-09150
Name: null
Funciton: Putative exported protein
Locus tag: SJA_C1-09140
Name: apbE
Funciton: ApbE family lipoprotein
SJA_C1-09170
PF03929
PepSY-associated TM helix domain protein
SJA_C1-09160
COG3656
Periplasmic-like protein
SJA_C1-09150
Putative exported protein
SJA_C1-09140
apbE
ApbE family lipoprotein
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