Regulog NtrC - Desulfuromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 56 sites [see more]

Member of regulog collections

By taxonomy - Desulfuromonadales
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Statistics of regulated genes
Genome	Genes	Operons
Geobacter metallireducens GS-15	10	5
Geobacter sulfurreducens PCA	10	5
Geobacter uraniumreducens Rf4	7	4
Geobacter sp. FRC-32	10	5
Geobacter sp. M21	7	4
Geobacter lovleyi SZ	4	3
Pelobacter propionicus DSM 2379	11	5
Pelobacter carbinolicus str. DSM 2380	5	3
Desulfuromonas acetoxidans DSM 684	8	5

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
nifR	* Geobacter metallireducens GS-15 Site: position = -46 score = 5.02959 sequence = TGCTTAAATTTTAAGCA Gene: Gmet_2561: Predicted oxidoreductase, FAD binding	* Geobacter sulfurreducens PCA Site: position = -41 score = 5.2211 sequence = TGCCTAAATTTTAAGCA Gene: GSU1005: Predicted oxidoreductase, FAD binding	* Geobacter uraniumreducens Rf4 Site: position = 9 score = 5.30572 sequence = TGCCCAAAAAATAGGCA Gene: Gura_0914: Predicted oxidoreductase, FAD binding	* Geobacter sp. FRC-32 Site: position = -42 score = 5.38266 sequence = TGCCCAAAATTTAGGCA Gene: Geob_1718: Predicted oxidoreductase, FAD binding	* Geobacter sp. M21 Site: position = -36 score = 5.11422 sequence = TGCTCATTTTTTAGGCA Gene: GM21_1403: Predicted oxidoreductase, FAD binding	Geobacter lovleyi SZ Gene: Glov_2788: Predicted oxidoreductase, FAD binding	* Pelobacter propionicus DSM 2379 Site: position = -66 score = 5.38266 sequence = TGCCCAAATTTTAGGCA Gene: Ppro_3077: Predicted oxidoreductase, FAD binding	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_1992: Predicted oxidoreductase, FAD binding	* Desulfuromonas acetoxidans DSM 684 Site: position = -10 score = 5.11422 sequence = TGCCTAAATAATGAGCA Gene: Dace_0518: Predicted oxidoreductase, FAD binding	Predicted oxidoreductase, FAD binding
ntrB	Geobacter metallireducens GS-15 Gene: Gmet_2562: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Geobacter sulfurreducens PCA Gene: GSU1004: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Geobacter uraniumreducens Rf4 Gene: Gura_0915: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Geobacter sp. FRC-32 Gene: Geob_1719: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Geobacter sp. M21 Gene: GM21_1404: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Geobacter lovleyi SZ Gene: Glov_2787: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Pelobacter propionicus DSM 2379 Gene: Ppro_3078: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_1993: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Desulfuromonas acetoxidans DSM 684 Gene: Dace_0519: Nitrogen regulation protein NR(II) (EC 2.7.3.-)	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC	Geobacter metallireducens GS-15 Gene: Gmet_2563: Nitrogen regulation protein NR(I), Fis family	Geobacter sulfurreducens PCA Gene: GSU1003: Nitrogen regulation protein NR(I), Fis family	Geobacter uraniumreducens Rf4 Gene: Gura_0916: Nitrogen regulation protein NR(I), Fis family	Geobacter sp. FRC-32 Gene: Geob_1720: Nitrogen regulation protein NR(I), Fis family	Geobacter sp. M21 Gene: GM21_1405: Nitrogen regulation protein NR(I), Fis family	Geobacter lovleyi SZ Gene: Glov_2786: Nitrogen regulation protein NR(I), Fis family	Pelobacter propionicus DSM 2379 Gene: Ppro_3079: Nitrogen regulation protein NR(I), Fis family	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_1994: Nitrogen regulation protein NR(I), Fis family	Desulfuromonas acetoxidans DSM 684 Gene: Dace_0520: Nitrogen regulation protein NR(I), Fis family	Nitrogen regulation protein NR(I), Fis family

CRON 2.
gdhA	* Geobacter metallireducens GS-15 Site: position = -152 score = 4.53351 sequence = TGCCGCAAATTCGGGCA Gene: Gmet_1186: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	* Geobacter sulfurreducens PCA Site: position = -151 score = 4.75005 sequence = TGCCGATAAATCAGGCA Site: position = -110 score = 4.51226 sequence = TGCACAGTTTTGGTGCA Site: position = -88 score = 4.76339 sequence = TGCATAAAATGCAGGCA Gene: GSU1305: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	* Geobacter uraniumreducens Rf4 Site: position = -168 score = 4.35857 sequence = TGCTTAATATTTAAGCT Site: position = -118 score = 4.96651 sequence = TGCCTATTTATGGTGCA Gene: Gura_2800: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	* Geobacter sp. FRC-32 Site: position = -191 score = 4.53763 sequence = TGAATAATTAATGTGCA Site: position = -172 score = 4.12201 sequence = TGCTTCTTGTTTGAGCA Site: position = -98 score = 4.75484 sequence = TGCCTGTTTATGGTGCA Gene: Geob_2399: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	* Geobacter sp. M21 Site: position = -143 score = 4.8294 sequence = TGCATGTTTTTCGGGCA Site: position = -100 score = 4.25118 sequence = TGCATACAAATGTGGCA Gene: GM21_0175: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	* Geobacter lovleyi SZ Site: position = -136 score = 4.28595 sequence = TGTCTGCTTTTTGTGCA Site: position = -103 score = 4.72796 sequence = TGTATATTTAATATGCA Site: position = -84 score = 4.16044 sequence = TGACTTAATATTAGGCA Gene: Glov_0573: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	* Pelobacter propionicus DSM 2379 Site: position = -101 score = 4.17622 sequence = TGCCGATAAAATGTGCT Gene: Ppro_3497: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	Pelobacter carbinolicus str. DSM 2380	* Desulfuromonas acetoxidans DSM 684 Site: position = -126 score = 4.58219 sequence = TGTTTATAAAATGTGCA Gene: Dace_2426: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)	NADP-specific glutamate dehydrogenase (EC 1.4.1.4)

CRON 3.
nifEN	* Geobacter metallireducens GS-15 Site: position = -217 score = 4.89212 sequence = TGCATAAAATGTGTGCA Gene: Gmet_0669: Nitrogenase FeMo-cofactor scaffold and assembly protein	* Geobacter sulfurreducens PCA Site: position = -215 score = 5.06123 sequence = TGCATAAAAAATGAGCA Gene: GSU2806: Nitrogenase FeMo-cofactor scaffold and assembly protein	* Geobacter uraniumreducens Rf4 Site: position = -228 score = 5.30732 sequence = TGCCCAATAATTGGGCA Gene: Gura_1201: Nitrogenase FeMo-cofactor scaffold and assembly protein	* Geobacter sp. FRC-32 Site: position = -219 score = 5.32842 sequence = TGCCCAAATTATAGGCA Gene: Geob_2581: Nitrogenase FeMo-cofactor scaffold and assembly protein	Geobacter sp. M21 Gene: GM21_2142: Nitrogenase FeMo-cofactor scaffold and assembly protein	Geobacter lovleyi SZ Gene: Glov_0639: Nitrogenase FeMo-cofactor scaffold and assembly protein	* Pelobacter propionicus DSM 2379 Site: position = -230 score = 4.63337 sequence = TGCAAAAAAAACAGGCA Gene: Ppro_3491: Nitrogenase FeMo-cofactor scaffold and assembly protein	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_0313: Nitrogenase FeMo-cofactor scaffold and assembly protein	* Desulfuromonas acetoxidans DSM 684 Site: position = -310 score = 4.46247 sequence = TGCTTAAACTTTGAGCA Gene: Dace_0726: Nitrogenase FeMo-cofactor scaffold and assembly protein	Nitrogenase FeMo-cofactor scaffold and assembly protein

CRON 4.
Gmet_0693	* Geobacter metallireducens GS-15 Site: position = -349 score = 5.00699 sequence = TGCTTATATAATGTGCA Gene: Gmet_0693: Conserved hypothetical protein	* Geobacter sulfurreducens PCA Site: position = -329 score = 5.25273 sequence = TGCATAAATAATGGGCA Gene: GSU0938: Conserved hypothetical protein	Geobacter uraniumreducens Rf4 Gene: Gura_3367: Conserved hypothetical protein	* Geobacter sp. FRC-32 Site: position = -323 score = 4.42181 sequence = TGCACAAAAAATAATCA Gene: Geob_1817: Conserved hypothetical protein	* Geobacter sp. M21 Site: position = -311 score = 4.06724 sequence = TGCACAAACAATAGGCT Gene: GM21_3137: Conserved hypothetical protein	* Geobacter lovleyi SZ Site: position = -268 score = 4.10953 sequence = TGCAAGATAGTTGGGCA Site: position = -213 score = 4.07814 sequence = TGCTGAATAAATGGTCA Gene: Glov_3332: Conserved hypothetical protein	* Pelobacter propionicus DSM 2379 Site: position = -332 score = 4.55688 sequence = TGCCTGTTTTTTGCGCA Site: position = -241 score = 4.8049 sequence = TGTATAAAAAATATGCA Gene: Ppro_0484: Conserved hypothetical protein	Pelobacter carbinolicus str. DSM 2380	Desulfuromonas acetoxidans DSM 684	Conserved hypothetical protein
glnK1	Geobacter metallireducens GS-15 Gene: Gmet_0694: Nitrogen regulatory protein P-II	Geobacter sulfurreducens PCA Gene: GSU0939: Nitrogen regulatory protein P-II	Geobacter uraniumreducens Rf4 Gene: Gura_3366: Nitrogen regulatory protein P-II	Geobacter sp. FRC-32 Gene: Geob_1818: Nitrogen regulatory protein P-II	Geobacter sp. M21 Gene: GM21_2709: Nitrogen regulatory protein P-II	Geobacter lovleyi SZ Gene: Glov_0472: Nitrogen regulatory protein P-II	Pelobacter propionicus DSM 2379 Gene: Ppro_0485: Nitrogen regulatory protein P-II	Pelobacter carbinolicus str. DSM 2380	Desulfuromonas acetoxidans DSM 684	Nitrogen regulatory protein P-II
amtB2	Geobacter metallireducens GS-15	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	Geobacter sp. FRC-32	Geobacter sp. M21	Geobacter lovleyi SZ	Pelobacter propionicus DSM 2379 Gene: Ppro_0486: Ammonium transporter	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_1022: Ammonium transporter	Desulfuromonas acetoxidans DSM 684 Gene: Dace_2802: Ammonium transporter	Ammonium transporter
amtB	Geobacter metallireducens GS-15 Gene: Gmet_0695: Ammonium transporter	Geobacter sulfurreducens PCA Gene: GSU0940: Ammonium transporter	Geobacter uraniumreducens Rf4 Gene: Gura_3365: Ammonium transporter	Geobacter sp. FRC-32 Gene: Geob_1819: Ammonium transporter	Geobacter sp. M21 Gene: GM21_2708: Ammonium transporter	Geobacter lovleyi SZ Gene: Glov_0471: Ammonium transporter	Pelobacter propionicus DSM 2379 Gene: Ppro_0487: Ammonium transporter	* Pelobacter carbinolicus str. DSM 2380 Site: position = -263 score = 4.68033 sequence = TGCCTCCATTATGGGCA Site: position = -242 score = 4.49607 sequence = TGCCTATTTTGGAAGCA Gene: Pcar_2589: Ammonium transporter	* Desulfuromonas acetoxidans DSM 684 Site: position = -219 score = 4.88239 sequence = TGCCCGTTTTTCAGGCA Gene: Dace_1145: Ammonium transporter	Ammonium transporter
glnK2	Geobacter metallireducens GS-15	Geobacter sulfurreducens PCA	Geobacter uraniumreducens Rf4	Geobacter sp. FRC-32	Geobacter sp. M21	Geobacter lovleyi SZ	Pelobacter propionicus DSM 2379	* Pelobacter carbinolicus str. DSM 2380 Site: position = -241 score = 4.35132 sequence = TGCTCAAAATTTAAGCC Gene: Pcar_1021: Nitrogen regulatory protein P-II	Desulfuromonas acetoxidans DSM 684 Gene: Dace_2803: Nitrogen regulatory protein P-II	Nitrogen regulatory protein P-II

CRON 5.
glnB	* Geobacter metallireducens GS-15 Site: position = -259 score = 4.27226 sequence = TGCTTCTGATTTGTGCA Gene: Gmet_1351: Nitrogen regulatory protein P-II	* Geobacter sulfurreducens PCA Site: position = -266 score = 4.42429 sequence = TGCCTGATAATTGTGCT Site: position = -253 score = 4.12853 sequence = TGCTCATTTGGTATGCA Gene: GSU1836: Nitrogen regulatory protein P-II	* Geobacter uraniumreducens Rf4 Site: position = -266 score = 4.19047 sequence = TGCCCATCCATTGGGCA Site: position = -234 score = 4.27439 sequence = TGCTCAATTTATAAGCT Gene: Gura_2229: Nitrogen regulatory protein P-II	* Geobacter sp. FRC-32 Site: position = -255 score = 4.47479 sequence = TGGTTATATATTGGGCA Site: position = -224 score = 4.6574 sequence = TGCCTAATTTATGGGCT Gene: Geob_2994: Nitrogen regulatory protein P-II	* Geobacter sp. M21 Site: position = -158 score = 4.19591 sequence = TGCCGGAATGTTGTGCA Gene: GM21_1183: Nitrogen regulatory protein P-II	* Geobacter lovleyi SZ Site: position = -154 score = 4.27409 sequence = TGCCTAATTTGTGTGCT Gene: Glov_1879: Nitrogen regulatory protein P-II	* Pelobacter propionicus DSM 2379 Site: position = -238 score = 5.0195 sequence = TGCCTAATTAAGGGGCA Site: position = -207 score = 4.32007 sequence = TGCCTATAATCAAGGCA Gene: Ppro_1680: Nitrogen regulatory protein P-II	* Pelobacter carbinolicus str. DSM 2380 Site: position = -306 score = 4.07995 sequence = TGTTTAAATAATAGTCA Site: position = -274 score = 4.93516 sequence = TGTCTAAATATTGGGCA Gene: Pcar_1500: Nitrogen regulatory protein P-II	* Desulfuromonas acetoxidans DSM 684 Site: position = -254 score = 4.27107 sequence = TGCTTAAAATGTCAGCA Site: position = -222 score = 4.07614 sequence = TGAGTAAATAATGTGCA Gene: Dace_1046: Nitrogen regulatory protein P-II	Nitrogen regulatory protein P-II
glnA	Geobacter metallireducens GS-15 Gene: Gmet_1352: Glutamine synthetase type I (EC 6.3.1.2)	Geobacter sulfurreducens PCA Gene: GSU1835: Glutamine synthetase type I (EC 6.3.1.2)	Geobacter uraniumreducens Rf4 Gene: Gura_2228: Glutamine synthetase type I (EC 6.3.1.2)	Geobacter sp. FRC-32 Gene: Geob_2993: Glutamine synthetase type I (EC 6.3.1.2)	Geobacter sp. M21 Gene: GM21_1184: Glutamine synthetase type I (EC 6.3.1.2)	Geobacter lovleyi SZ Gene: Glov_1880: Glutamine synthetase type I (EC 6.3.1.2)	Pelobacter propionicus DSM 2379 Gene: Ppro_1681: Glutamine synthetase type I (EC 6.3.1.2)	Pelobacter carbinolicus str. DSM 2380 Gene: Pcar_1501: Glutamine synthetase type I (EC 6.3.1.2)	Desulfuromonas acetoxidans DSM 684 Gene: Dace_1045: Glutamine synthetase type I (EC 6.3.1.2)	Glutamine synthetase type I (EC 6.3.1.2)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NtrC - Desulfuromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --