Regulog NtrC - Desulfuromonadales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Desulfuromonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Geobacter metallireducens GS-15 | 10 | 5 |
| Geobacter sulfurreducens PCA | 10 | 5 |
| Geobacter uraniumreducens Rf4 | 7 | 4 |
| Geobacter sp. FRC-32 | 10 | 5 |
| Geobacter sp. M21 | 7 | 4 |
| Geobacter lovleyi SZ | 4 | 3 |
| Pelobacter propionicus DSM 2379 | 11 | 5 |
| Pelobacter carbinolicus str. DSM 2380 | 5 | 3 |
| Desulfuromonas acetoxidans DSM 684 | 8 | 5 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| nifR |
*
Geobacter metallireducens GS-15 Site: position = -46 score = 5.02959 sequence = TGCTTAAATTTTAAGCA Gene: Gmet_2561: Predicted oxidoreductase, FAD binding |
*
Geobacter sulfurreducens PCA Site: position = -41 score = 5.2211 sequence = TGCCTAAATTTTAAGCA Gene: GSU1005: Predicted oxidoreductase, FAD binding |
*
Geobacter uraniumreducens Rf4 Site: position = 9 score = 5.30572 sequence = TGCCCAAAAAATAGGCA Gene: Gura_0914: Predicted oxidoreductase, FAD binding |
*
Geobacter sp. FRC-32 Site: position = -42 score = 5.38266 sequence = TGCCCAAAATTTAGGCA Gene: Geob_1718: Predicted oxidoreductase, FAD binding |
*
Geobacter sp. M21 Site: position = -36 score = 5.11422 sequence = TGCTCATTTTTTAGGCA Gene: GM21_1403: Predicted oxidoreductase, FAD binding |
Gene: Glov_2788: Predicted oxidoreductase, FAD binding |
*
Pelobacter propionicus DSM 2379 Site: position = -66 score = 5.38266 sequence = TGCCCAAATTTTAGGCA Gene: Ppro_3077: Predicted oxidoreductase, FAD binding |
Gene: Pcar_1992: Predicted oxidoreductase, FAD binding |
*
Desulfuromonas acetoxidans DSM 684 Site: position = -10 score = 5.11422 sequence = TGCCTAAATAATGAGCA Gene: Dace_0518: Predicted oxidoreductase, FAD binding |
Predicted oxidoreductase, FAD binding |
| ntrB |
Gene: Gmet_2562: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: GSU1004: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Gura_0915: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Geob_1719: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: GM21_1404: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Glov_2787: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Ppro_3078: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Pcar_1993: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Dace_0519: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: Gmet_2563: Nitrogen regulation protein NR(I), Fis family |
Gene: GSU1003: Nitrogen regulation protein NR(I), Fis family |
Gene: Gura_0916: Nitrogen regulation protein NR(I), Fis family |
Gene: Geob_1720: Nitrogen regulation protein NR(I), Fis family |
Gene: GM21_1405: Nitrogen regulation protein NR(I), Fis family |
Gene: Glov_2786: Nitrogen regulation protein NR(I), Fis family |
Gene: Ppro_3079: Nitrogen regulation protein NR(I), Fis family |
Gene: Pcar_1994: Nitrogen regulation protein NR(I), Fis family |
Gene: Dace_0520: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| CRON 2. | ||||||||||
| gdhA |
*
Geobacter metallireducens GS-15 Site: position = -152 score = 4.53351 sequence = TGCCGCAAATTCGGGCA Gene: Gmet_1186: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Geobacter sulfurreducens PCA Site: position = -151 score = 4.75005 sequence = TGCCGATAAATCAGGCA Site: position = -110 score = 4.51226 sequence = TGCACAGTTTTGGTGCA Site: position = -88 score = 4.76339 sequence = TGCATAAAATGCAGGCA Gene: GSU1305: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Geobacter uraniumreducens Rf4 Site: position = -168 score = 4.35857 sequence = TGCTTAATATTTAAGCT Site: position = -118 score = 4.96651 sequence = TGCCTATTTATGGTGCA Gene: Gura_2800: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Geobacter sp. FRC-32 Site: position = -191 score = 4.53763 sequence = TGAATAATTAATGTGCA Site: position = -172 score = 4.12201 sequence = TGCTTCTTGTTTGAGCA Site: position = -98 score = 4.75484 sequence = TGCCTGTTTATGGTGCA Gene: Geob_2399: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Geobacter sp. M21 Site: position = -143 score = 4.8294 sequence = TGCATGTTTTTCGGGCA Site: position = -100 score = 4.25118 sequence = TGCATACAAATGTGGCA Gene: GM21_0175: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Geobacter lovleyi SZ Site: position = -136 score = 4.28595 sequence = TGTCTGCTTTTTGTGCA Site: position = -103 score = 4.72796 sequence = TGTATATTTAATATGCA Site: position = -84 score = 4.16044 sequence = TGACTTAATATTAGGCA Gene: Glov_0573: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
*
Pelobacter propionicus DSM 2379 Site: position = -101 score = 4.17622 sequence = TGCCGATAAAATGTGCT Gene: Ppro_3497: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
|
*
Desulfuromonas acetoxidans DSM 684 Site: position = -126 score = 4.58219 sequence = TGTTTATAAAATGTGCA Gene: Dace_2426: NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) |
| CRON 3. | ||||||||||
| nifEN |
*
Geobacter metallireducens GS-15 Site: position = -217 score = 4.89212 sequence = TGCATAAAATGTGTGCA Gene: Gmet_0669: Nitrogenase FeMo-cofactor scaffold and assembly protein |
*
Geobacter sulfurreducens PCA Site: position = -215 score = 5.06123 sequence = TGCATAAAAAATGAGCA Gene: GSU2806: Nitrogenase FeMo-cofactor scaffold and assembly protein |
*
Geobacter uraniumreducens Rf4 Site: position = -228 score = 5.30732 sequence = TGCCCAATAATTGGGCA Gene: Gura_1201: Nitrogenase FeMo-cofactor scaffold and assembly protein |
*
Geobacter sp. FRC-32 Site: position = -219 score = 5.32842 sequence = TGCCCAAATTATAGGCA Gene: Geob_2581: Nitrogenase FeMo-cofactor scaffold and assembly protein |
Gene: GM21_2142: Nitrogenase FeMo-cofactor scaffold and assembly protein |
Gene: Glov_0639: Nitrogenase FeMo-cofactor scaffold and assembly protein |
*
Pelobacter propionicus DSM 2379 Site: position = -230 score = 4.63337 sequence = TGCAAAAAAAACAGGCA Gene: Ppro_3491: Nitrogenase FeMo-cofactor scaffold and assembly protein |
Gene: Pcar_0313: Nitrogenase FeMo-cofactor scaffold and assembly protein |
*
Desulfuromonas acetoxidans DSM 684 Site: position = -310 score = 4.46247 sequence = TGCTTAAACTTTGAGCA Gene: Dace_0726: Nitrogenase FeMo-cofactor scaffold and assembly protein |
Nitrogenase FeMo-cofactor scaffold and assembly protein |
| CRON 4. | ||||||||||
| Gmet_0693 |
*
Geobacter metallireducens GS-15 Site: position = -349 score = 5.00699 sequence = TGCTTATATAATGTGCA Gene: Gmet_0693: Conserved hypothetical protein |
*
Geobacter sulfurreducens PCA Site: position = -329 score = 5.25273 sequence = TGCATAAATAATGGGCA Gene: GSU0938: Conserved hypothetical protein |
Gene: Gura_3367: Conserved hypothetical protein |
*
Geobacter sp. FRC-32 Site: position = -323 score = 4.42181 sequence = TGCACAAAAAATAATCA Gene: Geob_1817: Conserved hypothetical protein |
*
Geobacter sp. M21 Site: position = -311 score = 4.06724 sequence = TGCACAAACAATAGGCT Gene: GM21_3137: Conserved hypothetical protein |
*
Geobacter lovleyi SZ Site: position = -268 score = 4.10953 sequence = TGCAAGATAGTTGGGCA Site: position = -213 score = 4.07814 sequence = TGCTGAATAAATGGTCA Gene: Glov_3332: Conserved hypothetical protein |
*
Pelobacter propionicus DSM 2379 Site: position = -332 score = 4.55688 sequence = TGCCTGTTTTTTGCGCA Site: position = -241 score = 4.8049 sequence = TGTATAAAAAATATGCA Gene: Ppro_0484: Conserved hypothetical protein |
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Conserved hypothetical protein |
| glnK1 |
Gene: Gmet_0694: Nitrogen regulatory protein P-II |
Gene: GSU0939: Nitrogen regulatory protein P-II |
Gene: Gura_3366: Nitrogen regulatory protein P-II |
Gene: Geob_1818: Nitrogen regulatory protein P-II |
Gene: GM21_2709: Nitrogen regulatory protein P-II |
Gene: Glov_0472: Nitrogen regulatory protein P-II |
Gene: Ppro_0485: Nitrogen regulatory protein P-II |
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Nitrogen regulatory protein P-II |
| amtB2 |
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Gene: Ppro_0486: Ammonium transporter |
Gene: Pcar_1022: Ammonium transporter |
Gene: Dace_2802: Ammonium transporter |
Ammonium transporter |
| amtB |
Gene: Gmet_0695: Ammonium transporter |
Gene: GSU0940: Ammonium transporter |
Gene: Gura_3365: Ammonium transporter |
Gene: Geob_1819: Ammonium transporter |
Gene: GM21_2708: Ammonium transporter |
Gene: Glov_0471: Ammonium transporter |
Gene: Ppro_0487: Ammonium transporter |
*
Pelobacter carbinolicus str. DSM 2380 Site: position = -263 score = 4.68033 sequence = TGCCTCCATTATGGGCA Site: position = -242 score = 4.49607 sequence = TGCCTATTTTGGAAGCA Gene: Pcar_2589: Ammonium transporter |
*
Desulfuromonas acetoxidans DSM 684 Site: position = -219 score = 4.88239 sequence = TGCCCGTTTTTCAGGCA Gene: Dace_1145: Ammonium transporter |
Ammonium transporter |
| glnK2 |
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*
Pelobacter carbinolicus str. DSM 2380 Site: position = -241 score = 4.35132 sequence = TGCTCAAAATTTAAGCC Gene: Pcar_1021: Nitrogen regulatory protein P-II |
Gene: Dace_2803: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| CRON 5. | ||||||||||
| glnB |
*
Geobacter metallireducens GS-15 Site: position = -259 score = 4.27226 sequence = TGCTTCTGATTTGTGCA Gene: Gmet_1351: Nitrogen regulatory protein P-II |
*
Geobacter sulfurreducens PCA Site: position = -266 score = 4.42429 sequence = TGCCTGATAATTGTGCT Site: position = -253 score = 4.12853 sequence = TGCTCATTTGGTATGCA Gene: GSU1836: Nitrogen regulatory protein P-II |
*
Geobacter uraniumreducens Rf4 Site: position = -266 score = 4.19047 sequence = TGCCCATCCATTGGGCA Site: position = -234 score = 4.27439 sequence = TGCTCAATTTATAAGCT Gene: Gura_2229: Nitrogen regulatory protein P-II |
*
Geobacter sp. FRC-32 Site: position = -255 score = 4.47479 sequence = TGGTTATATATTGGGCA Site: position = -224 score = 4.6574 sequence = TGCCTAATTTATGGGCT Gene: Geob_2994: Nitrogen regulatory protein P-II |
*
Geobacter sp. M21 Site: position = -158 score = 4.19591 sequence = TGCCGGAATGTTGTGCA Gene: GM21_1183: Nitrogen regulatory protein P-II |
*
Geobacter lovleyi SZ Site: position = -154 score = 4.27409 sequence = TGCCTAATTTGTGTGCT Gene: Glov_1879: Nitrogen regulatory protein P-II |
*
Pelobacter propionicus DSM 2379 Site: position = -238 score = 5.0195 sequence = TGCCTAATTAAGGGGCA Site: position = -207 score = 4.32007 sequence = TGCCTATAATCAAGGCA Gene: Ppro_1680: Nitrogen regulatory protein P-II |
*
Pelobacter carbinolicus str. DSM 2380 Site: position = -306 score = 4.07995 sequence = TGTTTAAATAATAGTCA Site: position = -274 score = 4.93516 sequence = TGTCTAAATATTGGGCA Gene: Pcar_1500: Nitrogen regulatory protein P-II |
*
Desulfuromonas acetoxidans DSM 684 Site: position = -254 score = 4.27107 sequence = TGCTTAAAATGTCAGCA Site: position = -222 score = 4.07614 sequence = TGAGTAAATAATGTGCA Gene: Dace_1046: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| glnA |
Gene: Gmet_1352: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: GSU1835: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Gura_2228: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Geob_2993: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: GM21_1184: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Glov_1880: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Ppro_1681: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Pcar_1501: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Dace_1045: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |