Regulog NtrC - Sphingomonadales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/alpha |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Erythrobacter litoralis HTCC2594 | 9 | 3 |
| Erythrobacter sp. NAP1 | 9 | 3 |
| Novosphingobium aromaticivorans DSM 12444 | 9 | 3 |
| Sphingopyxis alaskensis RB2256 | 9 | 3 |
| Sphingobium japonicum UT26S | 9 | 3 |
| Sphingomonas wittichii RW1 | 7 | 3 |
| Zymomonas mobilis subsp. mobilis ZM4 |
| Genes | Function | |||||||
|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||
| glnB |
*
Erythrobacter litoralis HTCC2594 Site: position = -237 score = 5.75215 sequence = TGCCTAAATTTTAAGCA Gene: ELI_01665: Glutamate synthase, large chain (EC 1.4.1.13) |
*
Erythrobacter sp. NAP1 Site: position = -208 score = 5.9175 sequence = TGCCCAAAATTTAGGCA Gene: NAP1_00830: Glutamate synthase, large chain (EC 1.4.1.13) |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -265 score = 5.47006 sequence = TGCCTAAAAATAAGGCA Site: position = -243 score = 4.86041 sequence = TGCGTAAAATTTGTGCA Gene: Saro_1109: Glutamate synthase, large chain (EC 1.4.1.13) |
*
Sphingopyxis alaskensis RB2256 Site: position = -229 score = 4.61141 sequence = TGCTGCTTTTTTAGGCA Gene: Sala_0148: Glutamate synthase, large chain (EC 1.4.1.13) |
*
Sphingobium japonicum UT26S Site: position = -199 score = 4.06513 sequence = TGCCCGGAATCCGGGCA Site: position = -230 score = 5.65598 sequence = TGCCTAAAAAATGGGCA Gene: SJA_C1-19360: Glutamate synthase, large chain (EC 1.4.1.13) |
*
Sphingomonas wittichii RW1 Site: position = -145 score = 5.36085 sequence = TGCCCATTTTTCAGGCA Gene: Swit_4832: Glutamate synthase, large chain (EC 1.4.1.13) |
Gene: ZMO0492: Glutamate synthase, large chain (EC 1.4.1.13) |
Glutamate synthase, large chain (EC 1.4.1.13) |
| glnA |
Gene: ELI_01660: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: NAP1_00825: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Saro_1108: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Sala_0149: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: SJA_C1-19370: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Swit_4831: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: ZMO0493: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| CRON 2. | ||||||||
| glnK |
*
Erythrobacter litoralis HTCC2594 Site: position = -134 score = 4.82405 sequence = TGCGTATTCTTTGGGCA Site: position = -152 score = 4.67588 sequence = TGACTAAAAATTAGGCC Gene: ELI_13865: Nitrogen regulatory protein P-II |
*
Erythrobacter sp. NAP1 Site: position = -164 score = 4.63952 sequence = TGCTCAAAAAATAAACA Site: position = -145 score = 4.20443 sequence = TGATTAAACCTTAGGCA Gene: NAP1_12238: Nitrogen regulatory protein P-II |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -182 score = 5.75215 sequence = TGCTTAAAATTTAGGCA Site: position = -207 score = 3.65002 sequence = TGCCCGGAAACGAAGCA Gene: Saro_0693: Nitrogen regulatory protein P-II |
*
Sphingopyxis alaskensis RB2256 Site: position = -163 score = 5.83403 sequence = TGCCCAAAAATTAGGCA Gene: Sala_2326: Nitrogen regulatory protein P-II |
*
Sphingobium japonicum UT26S Site: position = -121 score = 4.34492 sequence = TGCCCATTTTTTCAGCG Site: position = -150 score = 5.57124 sequence = TGCCTAATTTTTGAGCA Gene: SJA_C1-01910: Nitrogen regulatory protein P-II |
*
Sphingomonas wittichii RW1 Site: position = -159 score = 5.36085 sequence = TGCCTAAAAAACGGGCA Site: position = -141 score = 3.98131 sequence = GGCTCAACTTTTAGACA Gene: Swit_1918: Nitrogen regulatory protein P-II |
|
Nitrogen regulatory protein P-II |
| amtB |
Gene: ELI_13870: Ammonium transporter |
Gene: NAP1_12233: Ammonium transporter |
Gene: Saro_0694: Ammonium transporter |
Gene: Sala_2327: Ammonium transporter |
Gene: SJA_C1-01900: Ammonium transporter |
Gene: Swit_1917: Ammonium transporter |
|
Ammonium transporter |
| CRON 3. | ||||||||
| nifR3 |
*
Erythrobacter litoralis HTCC2594 Site: position = -31 score = 5.9175 sequence = TGCCCAAATTTTAGGCA Gene: ELI_06285: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
*
Erythrobacter sp. NAP1 Site: position = -32 score = 5.83403 sequence = TGCCCAATATTTAGGCA Gene: NAP1_05550: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
*
Novosphingobium aromaticivorans DSM 12444 Site: position = -28 score = 5.45829 sequence = TGCCTGTTTTTTAGGCA Gene: Saro_1926: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
*
Sphingopyxis alaskensis RB2256 Site: position = -38 score = 5.6547 sequence = TGCTCAAAATTTAGGCA Gene: Sala_1277: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
*
Sphingobium japonicum UT26S Site: position = -28 score = 5.45829 sequence = TGCCTGTTTTTTAGGCA Gene: SJA_C1-16750: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
*
Sphingomonas wittichii RW1 Site: position = -27 score = 4.87421 sequence = TGCCGCTTTTTTAGGCA Gene: Swit_0245: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: ZMO1127: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Nitrogen assimilation transcriptional regulator NtrX, Fis family |
| ntrB |
Gene: ELI_06280: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: NAP1_05545: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Saro_1927: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Sala_1276: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: SJA_C1-16740: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Swit_0246: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
|
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: ELI_06275: Nitrogen regulation protein NR(I), Fis family |
Gene: NAP1_05540: Nitrogen regulation protein NR(I), Fis family |
Gene: Saro_1928: Nitrogen regulation protein NR(I), Fis family |
Gene: Sala_1275: Nitrogen regulation protein NR(I), Fis family |
Gene: SJA_C1-16730: Nitrogen regulation protein NR(I), Fis family |
Gene: Swit_0247: Nitrogen regulation protein NR(I), Fis family |
|
Nitrogen regulation protein NR(I), Fis family |
| ntrY |
Gene: ELI_06270: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: NAP1_05535: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: Saro_1929: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: Sala_1274: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: SJA_C1-16720: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: Swit_0249: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Gene: ZMO1125: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-) |
| ntrXY |
Gene: ELI_06265: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: NAP1_05530: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: Saro_1930: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: Sala_1273: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: SJA_C1-16710: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: Swit_0250: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Gene: ZMO1124: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Nitrogen assimilation transcriptional regulator NtrX, Fis family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |