Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Sphingopyxis alaskensis RB2256

Properties
Regulator type: Transcription factor
TF locus tag: Sala_1275
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Sphingomonadales
Statistics of regulated genes:
- Genes 9
- Operons 3
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -163
Score: 5.8
Sequence: TGCCCAAAAATTAGGCA
Locus tag: Sala_2326
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Sala_2327
Name: amtB
Funciton: Ammonium transporter
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter

Position: -38
Score: 5.7
Sequence: TGCTCAAAATTTAGGCA
Locus tag: Sala_1277
Name: nifR3
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Locus tag: Sala_1276
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Sala_1275
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: Sala_1274
Name: ntrY
Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: Sala_1273
Name: ntrXY
Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
nifR3
Nitrogen assimilation transcriptional regulator NtrX, Fis family
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
Nitrogen regulation protein NR(I), Fis family
ntrY
Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
ntrXY
Nitrogen assimilation transcriptional regulator NtrX, Fis family

Position: -229
Score: 4.6
Sequence: TGCTGCTTTTTTAGGCA
Locus tag: Sala_0148
Name: glnB
Funciton: Glutamate synthase, large chain (EC 1.4.1.13)
Locus tag: Sala_0149
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
glnB
Glutamate synthase, large chain (EC 1.4.1.13)
glnA
Glutamine synthetase type I (EC 6.3.1.2)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD