Regulon of NtrC in Sphingopyxis alaskensis RB2256
| Regulator type: | Transcription factor |
| TF locus tag: | Sala_1275 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Sphingomonadales |
| Statistics of regulated genes: | |
| - Genes | 9 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Sphingomonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -163
Score: 5.8 Sequence: TGCCCAAAAATTAGGCA
Locus tag: Sala_2326
Name: glnK Funciton: Nitrogen regulatory protein P-II
Locus tag: Sala_2327
Name: amtB Funciton: Ammonium transporter |
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glnK
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Nitrogen regulatory protein P-II
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amtB
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Ammonium transporter
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Position: -38
Score: 5.7 Sequence: TGCTCAAAATTTAGGCA
Locus tag: Sala_1277
Name: nifR3 Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family
Locus tag: Sala_1276
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Sala_1275
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
Locus tag: Sala_1274
Name: ntrY Funciton: Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
Locus tag: Sala_1273
Name: ntrXY Funciton: Nitrogen assimilation transcriptional regulator NtrX, Fis family |
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nifR3
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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ntrY
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Nitrogen regulation protein NtrY, sensor kinase (EC 2.7.3.-)
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ntrXY
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Nitrogen assimilation transcriptional regulator NtrX, Fis family
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Position: -229
Score: 4.6 Sequence: TGCTGCTTTTTTAGGCA
Locus tag: Sala_0148
Name: glnB Funciton: Glutamate synthase, large chain (EC 1.4.1.13)
Locus tag: Sala_0149
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) |
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glnB
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Glutamate synthase, large chain (EC 1.4.1.13)
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |