Regulog NtrC - Various betaproteobacteria
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | 10 | 5 |
| Thauera sp. MZ1T | 12 | 6 |
| Dechloromonas aromatica RCB | 12 | 5 |
| Nitrosomonas europaea ATCC 19718 | ||
| Nitrosospira multiformis ATCC 25196 | ||
| Thiobacillus denitrificans | 8 | 3 |
| Chromobacterium violaceum ATCC 12472 | 6 | 3 |
| Neisseria meningitidis MC58 | ||
| Laribacter hongkongensis HLHK9 | 1 | 1 |
| Methylobacillus flagellatus KT | 6 | 2 |
| Methylotenera mobilis JLW8 | 13 | 5 |
| Methylophilales bacterium HTCC2181 | 7 | 3 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| glnA |
*
Azoarcus sp. EbN1 Site: position = -253 score = 5.54432 sequence = TGCACCATGATGGTGCG Gene: ebA4121: Glutamine synthetase type I (EC 6.3.1.2) |
*
Thauera sp. MZ1T Site: position = -196 score = 5.14676 sequence = CGCACCATTGAAGTGCA Site: position = -228 score = 5.4965 sequence = CGCACCATAGTAGTGCA Gene: Tmz1t_3648: Glutamine synthetase type I (EC 6.3.1.2) |
*
Dechloromonas aromatica RCB Site: position = -214 score = 5.66532 sequence = TGCACCAAAATAGTGCG Site: position = -183 score = 5.0109 sequence = TGCACGATCGTGGTGCA Gene: Daro_3763: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: NE0504: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: Nmul_A2288: Glutamine synthetase type I (EC 6.3.1.2) |
*
Thiobacillus denitrificans Site: position = -188 score = 4.33197 sequence = CGCCCTATAATGGAGCG Site: position = -220 score = 4.97217 sequence = TGCACCAAGACGGGGCA Gene: Tbd_2503: Glutamine synthetase type I (EC 6.3.1.2) |
*
Chromobacterium violaceum ATCC 12472 Site: position = -202 score = 5.22356 sequence = GGCACCATATCGGTGCA Site: position = -172 score = 4.6826 sequence = GGCACCAGAATGGTTCA Gene: CV3589: Glutamine synthetase type I (EC 6.3.1.2) |
Gene: NMB0359: Glutamine synthetase type I (EC 6.3.1.2) |
*
Laribacter hongkongensis HLHK9 Site: position = -226 score = 5.44086 sequence = TTCACCATTTTGGTGCA Site: position = -255 score = 5.11526 sequence = TGCACCATTGATGTGCA Gene: LHK_01876: Glutamine synthetase type I (EC 6.3.1.2) |
*
Methylobacillus flagellatus KT Site: position = -189 score = 5.57169 sequence = AGCACCAATATGGTGCA Site: position = -158 score = 4.90293 sequence = CGCAATATAGTGGTGCA Gene: Mfla_2447: Glutamine synthetase type I (EC 6.3.1.2) |
*
Methylotenera mobilis JLW8 Site: position = -153 score = 4.99457 sequence = TGCATTGTATTGGTGCA Site: position = -183 score = 5.28408 sequence = TGCACCAAAAATGTGCA Gene: Mmol_2138: Glutamine synthetase type I (EC 6.3.1.2) |
*
Methylophilales bacterium HTCC2181 Site: position = -173 score = 5.45712 sequence = TGCACTAAATTAGTGCG Site: position = -141 score = 4.42018 sequence = AGCATTTAATTGGTGCA Gene: MB2181_01610: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| ntrZ |
Gene: ebA4118: Conserved hypothetical signal peptide protein |
Gene: Tmz1t_3649: Conserved hypothetical signal peptide protein |
Gene: Daro_3762: Conserved hypothetical signal peptide protein |
Gene: NE0503: Conserved hypothetical signal peptide protein |
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Gene: Tbd_2502: Conserved hypothetical signal peptide protein |
Gene: CV3590: Conserved hypothetical signal peptide protein |
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Gene: Mfla_2448: Conserved hypothetical signal peptide protein |
Gene: Mmol_2139: Conserved hypothetical signal peptide protein |
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Conserved hypothetical signal peptide protein |
| ntrB |
Gene: ebA4117: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Tmz1t_3650: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Dechloromonas aromatica RCB Site: position = -204 score = 5.56447 sequence = TGCACCAATACGGTGCG Gene: Daro_3759: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
|
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Gene: Tbd_2501: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Chromobacterium violaceum ATCC 12472 Site: position = -118 score = 6.03802 sequence = TGCACCAAAATGGTGCA Gene: CV3591: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
|
Gene: LHK_01905: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Mfla_2449: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Methylotenera mobilis JLW8 Site: position = -268 score = 5.68828 sequence = TGCACCTAAATGGTGCA Site: position = -9 score = 4.91006 sequence = AGCACTATTATGGTTCA Gene: Mmol_2140: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: MB2181_01605: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
*
Azoarcus sp. EbN1 Site: position = -23 score = 5.31558 sequence = CGCACCAAAAAAGTGCA Gene: ebA4116: Nitrogen regulation protein NR(I), Fis family |
*
Thauera sp. MZ1T Site: position = -23 score = 5.3698 sequence = CGCACCAGAATAGTGCA Gene: Tmz1t_3651: Nitrogen regulation protein NR(I), Fis family |
Gene: Daro_3758: Nitrogen regulation protein NR(I), Fis family |
|
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Gene: Tbd_2500: Nitrogen regulation protein NR(I), Fis family |
Gene: CV3592: Nitrogen regulation protein NR(I), Fis family |
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Gene: LHK_01906: Nitrogen regulation protein NR(I), Fis family |
Gene: Mfla_2450: Nitrogen regulation protein NR(I), Fis family |
Gene: Mmol_2141: Nitrogen regulation protein NR(I), Fis family |
Gene: MB2181_01600: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| CRON 2. | |||||||||||||
| CHP02001 |
*
Azoarcus sp. EbN1 Site: position = 20 score = 4.99359 sequence = CGCACCGTTCCGGTGCA Gene: ebA3154: Conserved hypothetical protein CHP02001 |
*
Thauera sp. MZ1T Site: position = -175 score = 5.43914 sequence = CGCACCACATTGGTGCG Gene: Tmz1t_0595: Conserved hypothetical protein CHP02001 |
*
Dechloromonas aromatica RCB Site: position = -148 score = 4.96208 sequence = CGCACAGTTTTGGTGCG Gene: Daro_0052: Conserved hypothetical protein CHP02001 |
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Gene: Tbd_0239: Conserved hypothetical protein CHP02001 |
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Gene: Mfla_2512: Conserved hypothetical protein CHP02001 |
*
Methylotenera mobilis JLW8 Site: position = -288 score = 4.71349 sequence = CGCCCTTTAATAGTGCA Gene: Mmol_2289: Conserved hypothetical protein CHP02001 |
*
Methylophilales bacterium HTCC2181 Site: position = -282 score = 4.74984 sequence = TGCCCTGAAGTAGTGCA Gene: MB2181_01245: Conserved hypothetical protein CHP02001 |
Conserved hypothetical protein CHP02001 |
| glnK |
Gene: ebB95: Nitrogen regulatory protein P-II |
Gene: Tmz1t_0594: Nitrogen regulatory protein P-II |
Gene: Daro_0053: Nitrogen regulatory protein P-II |
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Gene: Tbd_0240: Nitrogen regulatory protein P-II |
*
Chromobacterium violaceum ATCC 12472 Site: position = -176 score = 5.23357 sequence = TGCACCAAAACCGTGCA Gene: CV4002: Nitrogen regulatory protein P-II |
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|
*2
Methylobacillus flagellatus KT Site: position = -188 score = 5.3427 sequence = TGAACTATTTTGGTGCA Site: position = -206 score = 5.08157 sequence = TGCACATCATTGGTGCA Gene: Mfla_0433: Nitrogen regulatory protein P-II Gene: Mfla_2513: Nitrogen regulatory protein P-II |
Gene: Mmol_2290: Nitrogen regulatory protein P-II |
Gene: MB2181_01250: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| amtB |
Gene: ebA3151: Ammonium transporter |
Gene: Tmz1t_0593: Ammonium transporter |
Gene: Daro_0054: Ammonium transporter |
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Gene: Tbd_0241: Ammonium transporter |
Gene: CV4003: Ammonium transporter |
Gene: NMB0615: Ammonium transporter |
Gene: LHK_02933: Ammonium transporter |
2
Methylobacillus flagellatus KT Gene: Mfla_2514: Ammonium transporter Gene: Mfla_0434: Ammonium transporter |
Gene: Mmol_2291: Ammonium transporter |
Gene: MB2181_01255: Ammonium transporter |
Ammonium transporter |
| CRON 3. | |||||||||||||
| amtB2 |
*
Azoarcus sp. EbN1 Site: position = -159 score = 5.19396 sequence = CGCACCGTAATTGTGCA Gene: ebA4609: Ammonium transporter |
*
Thauera sp. MZ1T Site: position = -115 score = 4.47361 sequence = CGCACCCCTCTGGTGCG Site: position = -49 score = 4.35274 sequence = CGCACTGGAACGGTGCT Gene: Tmz1t_0457: Ammonium transporter |
*
Dechloromonas aromatica RCB Site: position = -119 score = 4.89274 sequence = TGCACCAAACAGGTGCT Site: position = -53 score = 4.82629 sequence = TGCACTGGAATGGTGCT Gene: Daro_3703: Ammonium transporter |
|
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*
Thiobacillus denitrificans Site: position = -114 score = 4.33968 sequence = CGCACTTCGGCGGTGCA Gene: Tbd_1701: Ammonium transporter |
|
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Gene: LHK_03154: Ammonium transporter |
|
*
Methylotenera mobilis JLW8 Site: position = -152 score = 5.07588 sequence = TGCACATATTTAGTGCA Site: position = -122 score = 5.1301 sequence = TGCACAATGTTAGTGCA Gene: Mmol_1494: Ammonium transporter |
*
Methylophilales bacterium HTCC2181 Site: position = -134 score = 5.26994 sequence = TGCACCAAAATAATGCA Gene: MB2181_03520: Ammonium transporter |
Ammonium transporter |
| CRON 4. | |||||||||||||
| gltB |
*
Azoarcus sp. EbN1 Site: position = -96 score = 5.16027 sequence = TGCACAGTTTTGGTGCG Gene: ebA2252: Glutamate synthase, large chain (EC 1.4.1.13) |
*
Thauera sp. MZ1T Site: position = -141 score = 5.70881 sequence = TGCACCAGATTGGTGCA Gene: Tmz1t_0842: Glutamate synthase, large chain (EC 1.4.1.13) |
Gene: Daro_0217: Glutamate synthase, large chain (EC 1.4.1.13) |
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Gene: Mmol_2309: Glutamate synthase, large chain (EC 1.4.1.13) |
Gene: MB2181_01170: Glutamate synthase, large chain (EC 1.4.1.13) |
Glutamate synthase, large chain (EC 1.4.1.13) |
| gltD |
Gene: ebA2251: Glutamate synthase, small chain (EC 1.4.1.13) |
Gene: Tmz1t_0843: Glutamate synthase, small chain (EC 1.4.1.13) |
Gene: Daro_0218: Glutamate synthase, small chain (EC 1.4.1.13) |
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Gene: Mmol_2308: Glutamate synthase, small chain (EC 1.4.1.13) |
Gene: MB2181_01175: Glutamate synthase, small chain (EC 1.4.1.13) |
Glutamate synthase, small chain (EC 1.4.1.13) |
| CRON 5. | |||||||||||||
| nasD |
Gene: ebA1216: Nitrite reductase, large subunit (EC 1.7.1.4) |
*
Thauera sp. MZ1T Site: position = -290 score = 4.33303 sequence = CGCACCAGGGCTGTGCA Site: position = -258 score = 4.74326 sequence = TGCACCGCAGCAGTGCG Gene: Tmz1t_1142: Nitrite reductase, large subunit (EC 1.7.1.4) |
*
Dechloromonas aromatica RCB Site: position = -199 score = 5.27706 sequence = TGCACGAATTTGGTGCG Gene: Daro_0816: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Gene: Tbd_2309: Nitrite reductase, large subunit (EC 1.7.1.4) |
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*
Methylotenera mobilis JLW8 Site: position = -219 score = 4.34884 sequence = TGCACCAAAGTAGTAAA Gene: Mmol_1652: Nitrite reductase, large subunit (EC 1.7.1.4) |
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Nitrite reductase, large subunit (EC 1.7.1.4) |
| narK |
Gene: ebA1213: Nitrate/nitrite transporter |
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Gene: Mmol_1651: Nitrate/nitrite transporter |
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Nitrate/nitrite transporter |
| pkn |
Gene: ebA1212: Probable serine/threonine-protein kinase SCO3848 |
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Gene: Mmol_1650: Probable serine/threonine-protein kinase SCO3848 |
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Probable serine/threonine-protein kinase SCO3848 |
| nasE |
Gene: ebA1215: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Tmz1t_1143: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Daro_0817: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Gene: Tbd_2308: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Gene: Mmol_1649: Nitrite reductase, small subunit (EC 1.7.1.4) |
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Nitrite reductase, small subunit (EC 1.7.1.4) |
| nasA |
Gene: ebA1211: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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*
Thiobacillus denitrificans Site: position = -138 score = 4.4317 sequence = CGCACCAATTTGCGGCG Gene: Tbd_2310: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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Gene: Mmol_1648: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
| Daro_0818 |
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Gene: Daro_0818: Hypothetical protein |
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Hypothetical protein |
| narK |
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Gene: Daro_0819: Nitrate/nitrite antiporter |
Gene: NE0680: Nitrate/nitrite antiporter |
Gene: Nmul_A2663: Nitrate/nitrite antiporter |
Gene: Tbd_1943: Nitrate/nitrite antiporter |
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Gene: Mfla_0331: Nitrate/nitrite antiporter |
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Nitrate/nitrite antiporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |