Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NtrC in Dechloromonas aromatica RCB

Properties
Regulator type: Transcription factor
TF locus tag: Daro_3758
Regulator family: Fis
Regulation mode: activator (repressor)
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Regulog: NtrC - Various betaproteobacteria
Statistics of regulated genes:
- Genes 12
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 47 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -214
Score: 5.7
Sequence: TGCACCAAAATAGTGCG
Position: -183
Score: 5
Sequence: TGCACGATCGTGGTGCA
Locus tag: Daro_3763
Name: glnA
Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: Daro_3762
Name: ntrZ
Funciton: Conserved hypothetical signal peptide protein
glnA
Glutamine synthetase type I (EC 6.3.1.2)
ntrZ
Conserved hypothetical signal peptide protein

Position: -119
Score: 4.9
Sequence: TGCACCAAACAGGTGCT
Position: -53
Score: 4.8
Sequence: TGCACTGGAATGGTGCT
Locus tag: Daro_3703
Name: amtB2
Funciton: Ammonium transporter
amtB2
Ammonium transporter

Position: -199
Score: 5.3
Sequence: TGCACGAATTTGGTGCG
Locus tag: Daro_0816
Name: nasD
Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: Daro_0817
Name: nasE
Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: Daro_0818
Name: Daro_0818
Funciton: Hypothetical protein
Locus tag: Daro_0819
Name: narK
Funciton: Nitrate/nitrite antiporter
nasD
Nitrite reductase, large subunit (EC 1.7.1.4)
nasE
Nitrite reductase, small subunit (EC 1.7.1.4)
Daro_0818
Hypothetical protein
narK
Nitrate/nitrite antiporter

Position: -204
Score: 5.6
Sequence: TGCACCAATACGGTGCG
Locus tag: Daro_3759
Name: ntrB
Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: Daro_3758
Name: ntrC
Funciton: Nitrogen regulation protein NR(I), Fis family
ntrB
Nitrogen regulation protein NR(II) (EC 2.7.3.-)
ntrC
Nitrogen regulation protein NR(I), Fis family

Position: -148
Score: 5
Sequence: CGCACAGTTTTGGTGCG
Locus tag: Daro_0052
Name: CHP02001
Funciton: Conserved hypothetical protein CHP02001
Locus tag: Daro_0053
Name: glnK
Funciton: Nitrogen regulatory protein P-II
Locus tag: Daro_0054
Name: amtB
Funciton: Ammonium transporter
CHP02001
Conserved hypothetical protein CHP02001
glnK
Nitrogen regulatory protein P-II
amtB
Ammonium transporter
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
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