Regulon of NtrC in Dechloromonas aromatica RCB

Properties
Regulator type:	Transcription factor
TF locus tag:	Daro_3758
Regulator family:	Fis
Regulation mode:	activator (repressor)
Biological process:	Nitrogen assimilation
Effector:	Phosphorylated NtrB, signal histidine kinase
Regulog:	NtrC - Various betaproteobacteria
Statistics of regulated genes:
- Genes	12
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 47 sites [see more]

Member of regulog collections

By taxonomy - Various betaproteobacteria
By trascription factor - NtrC
By TF family - Fis
By effector - Phosphorylated NtrB, signal histidine kinase
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -214 Score: 5.7 Sequence: TGCACCAAAATAGTGCG Position: -183 Score: 5 Sequence: TGCACGATCGTGGTGCA Locus tag: Daro_3763 Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2) Locus tag: Daro_3762 Name: ntrZ Funciton: Conserved hypothetical signal peptide protein
	Daro_3763	glnA	Glutamine synthetase type I (EC 6.3.1.2)
	Daro_3762	ntrZ	Conserved hypothetical signal peptide protein
Position: -119 Score: 4.9 Sequence: TGCACCAAACAGGTGCT Position: -53 Score: 4.8 Sequence: TGCACTGGAATGGTGCT Locus tag: Daro_3703 Name: amtB2 Funciton: Ammonium transporter
	Daro_3703	amtB2	Ammonium transporter
Position: -199 Score: 5.3 Sequence: TGCACGAATTTGGTGCG Locus tag: Daro_0816 Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4) Locus tag: Daro_0817 Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4) Locus tag: Daro_0818 Name: Daro_0818 Funciton: Hypothetical protein Locus tag: Daro_0819 Name: narK Funciton: Nitrate/nitrite antiporter
	Daro_0816	nasD	Nitrite reductase, large subunit (EC 1.7.1.4)
	Daro_0817	nasE	Nitrite reductase, small subunit (EC 1.7.1.4)
	Daro_0818	Daro_0818	Hypothetical protein
	Daro_0819	narK	Nitrate/nitrite antiporter
Position: -204 Score: 5.6 Sequence: TGCACCAATACGGTGCG Locus tag: Daro_3759 Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-) Locus tag: Daro_3758 Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family
	Daro_3759	ntrB	Nitrogen regulation protein NR(II) (EC 2.7.3.-)
	Daro_3758	ntrC	Nitrogen regulation protein NR(I), Fis family
Position: -148 Score: 5 Sequence: CGCACAGTTTTGGTGCG Locus tag: Daro_0052 Name: CHP02001 Funciton: Conserved hypothetical protein CHP02001 Locus tag: Daro_0053 Name: glnK Funciton: Nitrogen regulatory protein P-II Locus tag: Daro_0054 Name: amtB Funciton: Ammonium transporter
	Daro_0052	CHP02001	Conserved hypothetical protein CHP02001
	Daro_0053	glnK	Nitrogen regulatory protein P-II
	Daro_0054	amtB	Ammonium transporter

Export
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	Regulatory Sites	[ FASTA format ]	DOWNLOAD