Regulog NtrC - Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alteromonadales
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 5 | 3 |
| Alteromonas macleodii 'Deep ecotype' | 5 | 3 |
| Glaciecola sp. HTCC2999 | 5 | 3 |
| Colwellia psychrerythraea 34H | 5 | 3 |
| Alteromonadales bacterium TW-7 | 5 | 3 |
| Pseudoalteromonas haloplanktis TAC125 | 5 | 3 |
| Pseudoalteromonas tunicata D2 | 5 | 3 |
| Idiomarina baltica OS145 | 3 | 2 |
| Idiomarina loihiensis L2TR | 5 | 3 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| ntrB |
*
Pseudoalteromonas atlantica T6c Site: position = -35 score = 5.60248 sequence = AGCACCAAAATGGTGCG Gene: Patl_1027: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -33 score = 5.61038 sequence = TGCACAATAATGGTGCA Gene: MADE_01589: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Glaciecola sp. HTCC2999 Site: position = -28 score = 5.68549 sequence = CGCACCTTTTTGGTGCA Gene: GHTCC_010100001115: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Colwellia psychrerythraea 34H Site: position = -42 score = 5.52651 sequence = CGCACCAAAACGGTGCA Gene: CPS_0398: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Alteromonadales bacterium TW-7 Site: position = -20 score = 5.59694 sequence = CGCACTAAAATGGTGCA Gene: ATW7_15216: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -20 score = 5.59694 sequence = CGCACTAAAATGGTGCA Gene: PSHAa0164: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Pseudoalteromonas tunicata D2 Site: position = -20 score = 5.59694 sequence = CGCACTAAAATGGTGCA Gene: PTD2_06404: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Idiomarina baltica OS145 Site: position = -39 score = 5.78697 sequence = TGCACCAAATTAGTGCA Gene: OS145_08983: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
*
Idiomarina loihiensis L2TR Site: position = 14 score = 5.57458 sequence = TGCACCAACTTGGTGCG Gene: IL2436: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: Patl_1028: Nitrogen regulation protein NR(I), Fis family |
Gene: MADE_01588: Nitrogen regulation protein NR(I), Fis family |
Gene: GHTCC_010100001120: Nitrogen regulation protein NR(I), Fis family |
Gene: CPS_0397: Nitrogen regulation protein NR(I), Fis family |
Gene: ATW7_15221: Nitrogen regulation protein NR(I), Fis family |
Gene: PSHAa0163: Nitrogen regulation protein NR(I), Fis family |
Gene: PTD2_06399: Nitrogen regulation protein NR(I), Fis family |
Gene: OS145_08978: Nitrogen regulation protein NR(I), Fis family |
Gene: IL2435: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| CRON 2. | ||||||||||
| glnK |
*
Pseudoalteromonas atlantica T6c Site: position = -178 score = 4.90408 sequence = TGCGCTAATTCGGTGCA Gene: Patl_0491: Nitrogen regulatory protein P-II |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -162 score = 5.33111 sequence = TGCACCATTGTTGTGCA Gene: MADE_00479: Nitrogen regulatory protein P-II |
*
Glaciecola sp. HTCC2999 Site: position = -170 score = 5.11119 sequence = TGCACTTATTAAGTGCA Gene: GHTCC_010100001884: Nitrogen regulatory protein P-II |
*
Colwellia psychrerythraea 34H Site: position = -139 score = 4.39941 sequence = TGCACGCTCTTGGTGCG Gene: CPS_0641: Nitrogen regulatory protein P-II |
*
Alteromonadales bacterium TW-7 Site: position = -141 score = 5.59714 sequence = CGCACCTAAATGGTGCG Gene: ATW7_10498: Nitrogen regulatory protein P-II |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -139 score = 5.6988 sequence = CGCACCTAATTGGTGCG Gene: PSHAa2258: Nitrogen regulatory protein P-II |
*
Pseudoalteromonas tunicata D2 Site: position = -142 score = 5.62368 sequence = TGCACAAATATGGTGCG Gene: PTD2_12849: Nitrogen regulatory protein P-II |
Gene: OS145_04543: Nitrogen regulatory protein P-II |
*
Idiomarina loihiensis L2TR Site: position = -124 score = 4.95228 sequence = CGCACGTTTTTTGTGCA Gene: IL2164: Nitrogen regulatory protein P-II |
Nitrogen regulatory protein P-II |
| amtB |
Gene: Patl_0492: Ammonium transporter |
Gene: MADE_00480: Ammonium transporter |
Gene: GHTCC_010100001889: Ammonium transporter |
Gene: CPS_0642: Ammonium transporter |
Gene: ATW7_10493: Ammonium transporter |
Gene: PSHAa2257: Ammonium transporter |
Gene: PTD2_12844: Ammonium transporter |
Gene: OS145_04548: Ammonium transporter |
Gene: IL2165: Ammonium transporter |
Ammonium transporter |
| CRON 3. | ||||||||||
| glnA |
*
Pseudoalteromonas atlantica T6c Site: position = -191 score = 4.29478 sequence = TGCATGGTAATGGTGCG Gene: Patl_1025: Glutamine synthetase type I (EC 6.3.1.2) |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -162 score = 5.5163 sequence = TGCACATTTTTGGTGCA Gene: MADE_01591: Glutamine synthetase type I (EC 6.3.1.2) |
*
Glaciecola sp. HTCC2999 Site: position = -196 score = 5.59676 sequence = TGCACCTATTTGGTGCT Gene: GHTCC_010100001110: Glutamine synthetase type I (EC 6.3.1.2) |
*
Colwellia psychrerythraea 34H Site: position = -203 score = 5.11416 sequence = AGCACCACTAAGGTGCA Gene: CPS_0400: Glutamine synthetase type I (EC 6.3.1.2) |
*
Alteromonadales bacterium TW-7 Site: position = -151 score = 5.60248 sequence = CGCACCATATTGGTGCT Gene: ATW7_15206: Glutamine synthetase type I (EC 6.3.1.2) |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -150 score = 5.69121 sequence = CGCACCATAATGGTGCG Gene: PSHAa0166: Glutamine synthetase type I (EC 6.3.1.2) |
*
Pseudoalteromonas tunicata D2 Site: position = -180 score = 5.45898 sequence = TGCACCAAATCTGTGCA Gene: PTD2_06414: Glutamine synthetase type I (EC 6.3.1.2) |
*
Idiomarina baltica OS145 Site: position = -222 score = 5.5431 sequence = TGAACCAAATTGGTGCA Gene: OS145_08988: Glutamine synthetase type I (EC 6.3.1.2) |
*
Idiomarina loihiensis L2TR Site: position = -158 score = 5.72535 sequence = TGCACCAATTTTGTGCG Gene: IL2437: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |