Profile of regulator NtrC in Alteromonadales
Properties
| Regulator family: |
Fis |
| Regulation mode: |
activator (repressor) |
| Biological process: |
Nitrogen assimilation |
| Effector: |
Phosphorylated NtrB, signal histidine kinase |
| Regulog: |
NtrC - Alteromonadales |
Member of regulog collections
Transcription factor binding sites
|
Locus Tag |
Name |
Position |
Score |
Sequence |
|
Pseudoalteromonas atlantica T6c
|
|
Patl_0491 |
glnK |
-178 |
4.9 |
TGCGCTAATTCGGTGCA |
|
Patl_1025 |
glnA |
-191 |
4.3 |
TGCATGGTAATGGTGCG |
|
Patl_1027 |
ntrB |
-35 |
5.6 |
AGCACCAAAATGGTGCG |
|
Alteromonas macleodii 'Deep ecotype'
|
|
MADE_00479 |
glnK |
-162 |
5.3 |
TGCACCATTGTTGTGCA |
|
MADE_01591 |
glnA |
-162 |
5.5 |
TGCACATTTTTGGTGCA |
|
MADE_01589 |
ntrB |
-33 |
5.6 |
TGCACAATAATGGTGCA |
|
Glaciecola sp. HTCC2999
|
|
GHTCC_010100001884 |
glnK |
-170 |
5.1 |
TGCACTTATTAAGTGCA |
|
GHTCC_010100001110 |
glnA |
-196 |
5.6 |
TGCACCTATTTGGTGCT |
|
GHTCC_010100001115 |
ntrB |
-28 |
5.7 |
CGCACCTTTTTGGTGCA |
|
Colwellia psychrerythraea 34H
|
|
CPS_0641 |
glnK |
-139 |
4.4 |
TGCACGCTCTTGGTGCG |
|
CPS_0400 |
glnA |
-203 |
5.1 |
AGCACCACTAAGGTGCA |
|
CPS_0398 |
ntrB |
-42 |
5.5 |
CGCACCAAAACGGTGCA |
|
Alteromonadales bacterium TW-7
|
|
ATW7_10498 |
glnK |
-141 |
5.6 |
CGCACCTAAATGGTGCG |
|
ATW7_15216 |
ntrB |
-20 |
5.6 |
CGCACTAAAATGGTGCA |
|
ATW7_15206 |
glnA |
-151 |
5.6 |
CGCACCATATTGGTGCT |
|
Pseudoalteromonas haloplanktis TAC125
|
|
PSHAa2258 |
glnK |
-139 |
5.7 |
CGCACCTAATTGGTGCG |
|
PSHAa0164 |
ntrB |
-20 |
5.6 |
CGCACTAAAATGGTGCA |
|
PSHAa0166 |
glnA |
-150 |
5.7 |
CGCACCATAATGGTGCG |
|
Pseudoalteromonas tunicata D2
|
|
PTD2_12849 |
glnK |
-142 |
5.6 |
TGCACAAATATGGTGCG |
|
PTD2_06404 |
ntrB |
-20 |
5.6 |
CGCACTAAAATGGTGCA |
|
PTD2_06414 |
glnA |
-180 |
5.5 |
TGCACCAAATCTGTGCA |
|
Idiomarina baltica OS145
|
|
OS145_08983 |
ntrB |
-39 |
5.8 |
TGCACCAAATTAGTGCA |
|
OS145_08988 |
glnA |
-222 |
5.5 |
TGAACCAAATTGGTGCA |
|
Idiomarina loihiensis L2TR
|
|
IL2164 |
glnK |
-124 |
5 |
CGCACGTTTTTTGTGCA |
|
IL2436 |
ntrB |
14 |
5.6 |
TGCACCAACTTGGTGCG |
|
IL2437 |
glnA |
-158 |
5.7 |
TGCACCAATTTTGTGCG |
Export
|
Regulatory Sites
|
[ FASTA format ]
|
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