Regulog NtrC - Ralstonia
| Regulator type: | Transcription factor |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Genome | Genes | Operons |
|---|---|---|
| Ralstonia solanacearum GMI1000 | 14 | 3 |
| Ralstonia pickettii 12J | 10 | 3 |
| Ralstonia metallidurans CH34 | 15 | 5 |
| Ralstonia eutropha JMP134 | 15 | 5 |
| Ralstonia eutropha H16 | 10 | 4 |
| Cupriavidus taiwanensis | 10 | 4 |
| Genes | Function | ||||||
|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||
| glnA |
*2
Ralstonia solanacearum GMI1000 Site: position = -334 score = 5.1269 sequence = CGCACTATGATGGTGCG Gene: RSc1258: Glutamine synthetase type I (EC 6.3.1.2) Gene: RSp0886: Glutamine synthetase type I (EC 6.3.1.2) |
*
Ralstonia pickettii 12J Site: position = -346 score = 4.6835 sequence = TGCACCGTTTATGTGCG Gene: Rpic_1086: Glutamine synthetase type I (EC 6.3.1.2) |
*
Ralstonia metallidurans CH34 Site: position = -297 score = 4.89463 sequence = CGCACCGTTATGGTGTT Gene: Rmet_2062: Glutamine synthetase type I (EC 6.3.1.2) |
*
Ralstonia eutropha JMP134 Site: position = -319 score = 4.89463 sequence = CGCACCGTTATGGTGTT Gene: Reut_A2057: Glutamine synthetase type I (EC 6.3.1.2) |
*2
Ralstonia eutropha H16 Gene: H16_B0618: Glutamine synthetase type I (EC 6.3.1.2) Site: position = -295 score = 4.68597 sequence = TGCACCATTGTGGTGTT Gene: H16_A2335: Glutamine synthetase type I (EC 6.3.1.2) |
*
Cupriavidus taiwanensis Site: position = -334 score = 4.804 sequence = CGCACTAATGCGGTGCG Site: position = -304 score = 4.71001 sequence = TGCACCATGATGGTGTT Gene: RALTA_A1880: Glutamine synthetase type I (EC 6.3.1.2) |
Glutamine synthetase type I (EC 6.3.1.2) |
| ntrZ |
Gene: RS02776: Conserved hypothetical signal peptide protein |
Gene: Rpic_1087: Conserved hypothetical signal peptide protein |
*
Ralstonia metallidurans CH34 Site: position = -193 score = 4.3847 sequence = TGCACCAGGAAGGGGCG Gene: Rmet_2061: Conserved hypothetical signal peptide protein |
*
Ralstonia eutropha JMP134 Site: position = -80 score = 4.6073 sequence = AGCACCATCAAGGGGCG Gene: Reut_A2056: Conserved hypothetical signal peptide protein |
*
Ralstonia eutropha H16 Site: position = -95 score = 4.66625 sequence = TGCACCAGAAAGGGGCG Gene: H16_A2334: Conserved hypothetical signal peptide protein |
*
Cupriavidus taiwanensis Site: position = -190 score = 4.46856 sequence = TGCACCACAAGGGGGCG Gene: RALTA_A1879: Conserved hypothetical signal peptide protein |
Conserved hypothetical signal peptide protein |
| ntrB |
Gene: RSc1260: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Rpic_1088: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Rmet_2060: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: Reut_A2055: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: H16_A2333: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Gene: RALTA_A1878: Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
Nitrogen regulation protein NR(II) (EC 2.7.3.-) |
| ntrC |
Gene: RSc1261: Nitrogen regulation protein NR(I), Fis family |
Gene: Rpic_1089: Nitrogen regulation protein NR(I), Fis family |
Gene: Rmet_2059: Nitrogen regulation protein NR(I), Fis family |
Gene: Reut_A2054: Nitrogen regulation protein NR(I), Fis family |
Gene: H16_A2332: Nitrogen regulation protein NR(I), Fis family |
Gene: RALTA_A1877: Nitrogen regulation protein NR(I), Fis family |
Nitrogen regulation protein NR(I), Fis family |
| CRON 2. | |||||||
| amtB |
|
*
Ralstonia pickettii 12J Site: position = -137 score = 4.87956 sequence = CGCACGACCATGGTGCG Gene: Rpic_0087: Ammonium transporter |
*
Ralstonia metallidurans CH34 Site: position = -185 score = 4.51151 sequence = TGCGCCATCACGGCGCA Gene: Rmet_4750: Ammonium transporter |
*
Ralstonia eutropha JMP134 Site: position = -91 score = 4.61348 sequence = TCCACCATGAAGGTGCA Site: position = -232 score = 4.65733 sequence = TGCACCACTAAGGTTCA Gene: Reut_B4038: Ammonium transporter |
*
Ralstonia eutropha H16 Site: position = -188 score = 4.93537 sequence = CGCGCCATTTTGGCGCA Site: position = -221 score = 5.12771 sequence = CGCACCATAACGGTTCA Gene: H16_B1234: Ammonium transporter |
*
Cupriavidus taiwanensis Site: position = -187 score = 4.93537 sequence = CGCGCCATTTTGGCGCA Gene: RALTA_B1139: Ammonium transporter |
Ammonium transporter |
| CRON 3. | |||||||
| narK |
*
Ralstonia solanacearum GMI1000 Site: position = -258 score = 4.82358 sequence = TGCACCGAAACCGTGCA Gene: RS03167: Nitrate/nitrite antiporter |
*
Ralstonia pickettii 12J Site: position = -272 score = 4.4036 sequence = TGCACCGAAAGCGTGCG Gene: Rpic_4163: Nitrate/nitrite antiporter |
*
Ralstonia metallidurans CH34 Site: position = -284 score = 4.98174 sequence = CGCACCATTGCCGTGCG Gene: Rmet_4817: Nitrate/nitrite antiporter |
*
Ralstonia eutropha JMP134 Site: position = -271 score = 4.19835 sequence = CGCACCATGACTGTGCC Gene: Reut_B4859: Nitrate/nitrite antiporter |
Gene: H16_B0780: Nitrate/nitrite antiporter |
Gene: RALTA_B0614: Nitrate/nitrite antiporter |
Nitrate/nitrite antiporter |
| nasD |
Gene: RSp1222: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Rpic_4164: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Rmet_4818: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: Reut_B4860: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: H16_B0779: Nitrite reductase, large subunit (EC 1.7.1.4) |
Gene: RALTA_B0613: Nitrite reductase, large subunit (EC 1.7.1.4) |
Nitrite reductase, large subunit (EC 1.7.1.4) |
| nasE |
Gene: RSp1221: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Rpic_4165: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Rmet_4819: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: Reut_B4861: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: H16_B0778: Nitrite reductase, small subunit (EC 1.7.1.4) |
Gene: RALTA_B0612: Nitrite reductase, small subunit (EC 1.7.1.4) |
Nitrite reductase, small subunit (EC 1.7.1.4) |
| nasB |
Gene: RS03164: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Gene: Rpic_4166: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Gene: Rmet_4820: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Gene: Reut_B4862: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Gene: H16_B0777: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Gene: RALTA_B0611: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
Assimilatory nitrate reductase, small subunit (EC:1.7.99.4) |
| nasA |
Gene: RSp1219: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Rpic_4167: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Rmet_4821: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: Reut_B4863: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: H16_B0776: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Gene: RALTA_B0610: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
| CRON 4. | |||||||
| dppA |
*
Ralstonia solanacearum GMI1000 Site: position = -193 score = 4.59913 sequence = TGCACCAATTTGTGGCG Gene: RSc2870: Dipeptide ABC transporter, substrate-binding component |
|
*
Ralstonia metallidurans CH34 Site: position = -91 score = 4.27397 sequence = CGCACCAAAATGCGGCC Site: position = -218 score = 4.49333 sequence = CGCAGCATTGCGGGGCA Gene: Rmet_3158: Dipeptide ABC transporter, substrate-binding component |
*
Ralstonia eutropha JMP134 Site: position = -93 score = 4.896 sequence = CGCACCAAAATGCAGCG Gene: Reut_A3006: Dipeptide ABC transporter, substrate-binding component |
*
Ralstonia eutropha H16 Site: position = -93 score = 4.71663 sequence = CGCACCAAAACGCAGCG Gene: H16_A3298: Dipeptide ABC transporter, substrate-binding component |
*
Cupriavidus taiwanensis Site: position = -93 score = 4.63427 sequence = CGCACCAAAAAGCAGCG Gene: RALTA_A2753: Dipeptide ABC transporter, substrate-binding component |
Dipeptide ABC transporter, substrate-binding component |
| dppB |
Gene: RSc2869: Dipeptide ABC transporter, permease component 1 |
|
Gene: Rmet_3157: Dipeptide ABC transporter, permease component 1 |
Gene: Reut_A3005: Dipeptide ABC transporter, permease component 1 |
Gene: H16_A3297: Dipeptide ABC transporter, permease component 1 |
Gene: RALTA_A2752: Dipeptide ABC transporter, permease component 1 |
Dipeptide ABC transporter, permease component 1 |
| dppC |
Gene: RSc2868: Dipeptide ABC transporter, permease component 2 |
|
Gene: Rmet_3156: Dipeptide ABC transporter, permease component 2 |
Gene: Reut_A3004: Dipeptide ABC transporter, permease component 2 |
Gene: H16_A3296: Dipeptide ABC transporter, permease component 2 |
Gene: RALTA_A2751: Dipeptide ABC transporter, permease component 2 |
Dipeptide ABC transporter, permease component 2 |
| dppD |
Gene: RSc2867: Dipeptide ABC transporter, ATP-binding component 1 |
|
Gene: Rmet_3155: Dipeptide ABC transporter, ATP-binding component 1 |
Gene: Reut_A3003: Dipeptide ABC transporter, ATP-binding component 1 |
Gene: H16_A3295: Dipeptide ABC transporter, ATP-binding component 1 |
Gene: RALTA_A2750: Dipeptide ABC transporter, ATP-binding component 1 |
Dipeptide ABC transporter, ATP-binding component 1 |
| dppF |
Gene: RSc2866: Dipeptide ABC transporter, ATP-binding component 2 |
|
Gene: Rmet_3154: Dipeptide ABC transporter, ATP-binding component 2 |
Gene: Reut_A3002: Dipeptide ABC transporter, ATP-binding component 2 |
Gene: H16_A3294: Dipeptide ABC transporter, ATP-binding component 2 |
Gene: RALTA_A2749: Dipeptide ABC transporter, ATP-binding component 2 |
Dipeptide ABC transporter, ATP-binding component 2 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |