Regulon of NtrC in Ralstonia solanacearum GMI1000
| Regulator type: | Transcription factor |
| TF locus tag: | RSc1261 |
| Regulator family: | Fis |
| Regulation mode: | activator (repressor) |
| Biological process: | Nitrogen assimilation |
| Effector: | Phosphorylated NtrB, signal histidine kinase |
| Regulog: | NtrC - Ralstonia |
| Statistics of regulated genes: | |
| - Genes | 14 |
| - Operons | 3 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Ralstonia
- By trascription factor - NtrC
- By TF family - Fis
- By effector - Phosphorylated NtrB, signal histidine kinase
- By pathway - Nitrogen assimilation
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -258
Score: 4.8 Sequence: TGCACCGAAACCGTGCA
Locus tag: RS03167
Name: narK Funciton: Nitrate/nitrite antiporter
Locus tag: RSp1222
Name: nasD Funciton: Nitrite reductase, large subunit (EC 1.7.1.4)
Locus tag: RSp1221
Name: nasE Funciton: Nitrite reductase, small subunit (EC 1.7.1.4)
Locus tag: RS03164
Name: nasB Funciton: Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
Locus tag: RSp1219
Name: nasA Funciton: Assimilatory nitrate reductase, large subunit (EC:1.7.99.4) |
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narK
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Nitrate/nitrite antiporter
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nasD
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Nitrite reductase, large subunit (EC 1.7.1.4)
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nasE
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Nitrite reductase, small subunit (EC 1.7.1.4)
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nasB
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Assimilatory nitrate reductase, small subunit (EC:1.7.99.4)
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nasA
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Assimilatory nitrate reductase, large subunit (EC:1.7.99.4)
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Position: -334
Score: 5.1 Sequence: CGCACTATGATGGTGCG
Locus tag: RSc1258
Name: glnA Funciton: Glutamine synthetase type I (EC 6.3.1.2)
Locus tag: RS02776
Name: ntrZ Funciton: Conserved hypothetical signal peptide protein
Locus tag: RSc1260
Name: ntrB Funciton: Nitrogen regulation protein NR(II) (EC 2.7.3.-)
Locus tag: RSc1261
Name: ntrC Funciton: Nitrogen regulation protein NR(I), Fis family |
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glnA
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Glutamine synthetase type I (EC 6.3.1.2)
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ntrZ
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Conserved hypothetical signal peptide protein
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ntrB
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Nitrogen regulation protein NR(II) (EC 2.7.3.-)
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ntrC
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Nitrogen regulation protein NR(I), Fis family
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Position: -193
Score: 4.6 Sequence: TGCACCAATTTGTGGCG
Locus tag: RSc2870
Name: dppA Funciton: Dipeptide ABC transporter, substrate-binding component
Locus tag: RSc2869
Name: dppB Funciton: Dipeptide ABC transporter, permease component 1
Locus tag: RSc2868
Name: dppC Funciton: Dipeptide ABC transporter, permease component 2
Locus tag: RSc2867
Name: dppD Funciton: Dipeptide ABC transporter, ATP-binding component 1
Locus tag: RSc2866
Name: dppF Funciton: Dipeptide ABC transporter, ATP-binding component 2 |
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dppA
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Dipeptide ABC transporter, substrate-binding component
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dppB
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Dipeptide ABC transporter, permease component 1
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dppC
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Dipeptide ABC transporter, permease component 2
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dppD
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Dipeptide ABC transporter, ATP-binding component 1
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dppF
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Dipeptide ABC transporter, ATP-binding component 2
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |