Regulog PedR - Cyanobacteria

Properties
Regulator type:	Transcription factor
Regulator family:	LuxR
Regulation mode:	repressor (activator)
Biological process:	Photosynthesis; Carbon fixation
Effector:	Trx, thioredoxin protein
Phylum:	Cyanobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 56 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - LuxR
By effector - Trx, thioredoxin protein
By pathway - Photosynthesis
By pathway - Carbon fixation

Statistics of regulated genes
Genome	Genes	Operons
Cyanothece sp. ATCC 51142	5	5
Cyanothece sp. PCC 7425	4	4
Cyanothece sp. PCC 8801	5	5
Gloeobacter violaceus PCC 7421
Microcystis aeruginosa NIES-843	4	4
Nostoc sp. PCC 7120	7	7
Prochlorococcus marinus str. MIT 9313	2	2
Synechococcus elongatus PCC 7942	2	2
Synechococcus sp. JA-3-3Ab	3	2
Synechococcus sp. PCC 7002	5	5
Synechococcus sp. WH 8102
Synechocystis sp. PCC 6803	8	8
Thermosynechococcus elongatus BP-1	2	2
Trichodesmium erythraeum IMS101	3	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
chlB	Cyanothece sp. ATCC 51142 Gene: cce_1954: Light-independent protochlorophyllide reductase subunit B	Cyanothece sp. PCC 7425 Gene: Cyan7425_3666: Light-independent protochlorophyllide reductase subunit B	Cyanothece sp. PCC 8801 Gene: PCC8801_2892: Light-independent protochlorophyllide reductase subunit B	Gloeobacter violaceus PCC 7421 Gene: gvip017: Light-independent protochlorophyllide reductase subunit B	* Microcystis aeruginosa NIES-843 Site: position = -319 score = 4.46396 sequence = AAGCAAAATTACCG Gene: MAE_53860: Light-independent protochlorophyllide reductase subunit B	* Nostoc sp. PCC 7120 Site: position = -56 score = 3.71422 sequence = AAGCACTTATAGTC Gene: alr3441: Light-independent protochlorophyllide reductase subunit B	Prochlorococcus marinus str. MIT 9313 Gene: PMT1216: Light-independent protochlorophyllide reductase subunit B	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_1838: Light-independent protochlorophyllide reductase subunit B	Synechococcus sp. JA-3-3Ab Gene: CYA_0895: Light-independent protochlorophyllide reductase subunit B	* Synechococcus sp. PCC 7002 Site: position = -14 score = 4.59658 sequence = GAGTAAAAATACCT Gene: SYNPCC7002_A1652: Light-independent protochlorophyllide reductase subunit B	Synechococcus sp. WH 8102 Gene: SYNW1724: Light-independent protochlorophyllide reductase subunit B	* Synechocystis sp. PCC 6803 Site: position = -182 score = 3.39411 sequence = AAGCATTAAGAATT Gene: slr0772: Light-independent protochlorophyllide reductase subunit B	Thermosynechococcus elongatus BP-1 Gene: null: Light-independent protochlorophyllide reductase subunit B	* Trichodesmium erythraeum IMS101 Site: position = -177 score = 4.09712 sequence = AGTTAAAAATACTT Gene: Tery_3812: Light-independent protochlorophyllide reductase subunit B	Light-independent protochlorophyllide reductase subunit B

CRON 2.
chlL	* Cyanothece sp. ATCC 51142 Site: position = -155 score = 4.32968 sequence = AAGCAATTTTTCTC Gene: cce_4532: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Cyanothece sp. PCC 7425 Gene: Cyan7425_3939: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	* Cyanothece sp. PCC 8801 Site: position = -42 score = 4.16646 sequence = AGGCAAATACACTT Gene: PCC8801_0791: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Gloeobacter violaceus PCC 7421 Gene: gvip328: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	* Microcystis aeruginosa NIES-843 Site: position = -223 score = 3.57541 sequence = AAGTAAATGTATAA Gene: MAE_16230: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Nostoc sp. PCC 7120 Gene: all5078: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Prochlorococcus marinus str. MIT 9313 Gene: PMT1217: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_1419: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Synechococcus sp. JA-3-3Ab Gene: CYA_2382: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A2347: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Synechococcus sp. WH 8102 Gene: SYNW1725: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	* Synechocystis sp. PCC 6803 Site: position = -178 score = 4.01522 sequence = AAGTTATTTTATTT Site: position = -196 score = 4.7505 sequence = AAGTAACTATACCC Gene: slr0749: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Thermosynechococcus elongatus BP-1 Gene: null: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Trichodesmium erythraeum IMS101 Gene: Tery_1532: Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein	Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein

CRON 3.
sll0296	Cyanothece sp. ATCC 51142 Gene: cce_4661: Conserved hypothetical protein	Cyanothece sp. PCC 7425	Cyanothece sp. PCC 8801 Gene: PCC8801_0705: Conserved hypothetical protein	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Prochlorococcus marinus str. MIT 9313	Synechococcus elongatus PCC 7942	Synechococcus sp. JA-3-3Ab	* Synechococcus sp. PCC 7002 Site: position = -63 score = 4.12899 sequence = AAGCATAAATTCCC Gene: SYNPCC7002_A1792: Conserved hypothetical protein	Synechococcus sp. WH 8102	* Synechocystis sp. PCC 6803 Site: position = -349 score = 4.82382 sequence = GAGTAAATATACCT Gene: sll0296: Conserved hypothetical protein	Thermosynechococcus elongatus BP-1	Trichodesmium erythraeum IMS101	Conserved hypothetical protein

CRON 4.
CYA_0085	Cyanothece sp. ATCC 51142	Cyanothece sp. PCC 7425	Cyanothece sp. PCC 8801	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	Nostoc sp. PCC 7120	Prochlorococcus marinus str. MIT 9313	Synechococcus elongatus PCC 7942	* Synechococcus sp. JA-3-3Ab Site: position = -109 score = 3.50942 sequence = AACCATATTTTCTC Gene: CYA_0085: hypothetical protein	Synechococcus sp. PCC 7002	Synechococcus sp. WH 8102	Synechocystis sp. PCC 6803	Thermosynechococcus elongatus BP-1	Trichodesmium erythraeum IMS101	hypothetical protein
rpe	Cyanothece sp. ATCC 51142 Gene: cce_0798: Ribulose-phosphate 3-epimerase	* Cyanothece sp. PCC 7425 Site: position = -14 score = 3.8639 sequence = GAGGAACTTTACCT Gene: Cyan7425_1996: Ribulose-phosphate 3-epimerase	* Cyanothece sp. PCC 8801 Site: position = -275 score = 3.64426 sequence = AAGCAGCTATTCTG Gene: PCC8801_1619: Ribulose-phosphate 3-epimerase	Gloeobacter violaceus PCC 7421 Gene: gll3548: Ribulose-phosphate 3-epimerase	Microcystis aeruginosa NIES-843 Gene: MAE_61690: Ribulose-phosphate 3-epimerase	* Nostoc sp. PCC 7120 Site: position = -263 score = 4.18289 sequence = AAGCATCAATACCG Gene: alr0782: Ribulose-phosphate 3-epimerase	Prochlorococcus marinus str. MIT 9313 Gene: PMT0569: Ribulose-phosphate 3-epimerase	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_0604: Ribulose-phosphate 3-epimerase	Synechococcus sp. JA-3-3Ab Gene: CYA_0084: Ribulose-phosphate 3-epimerase	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A0324: Ribulose-phosphate 3-epimerase	Synechococcus sp. WH 8102 Gene: SYNW1115: Ribulose-phosphate 3-epimerase	* Synechocystis sp. PCC 6803 Site: position = -27 score = 3.53901 sequence = GAGTTGAAATACTT Gene: sll0807: Ribulose-phosphate 3-epimerase	Thermosynechococcus elongatus BP-1 Gene: null: Ribulose-phosphate 3-epimerase	Trichodesmium erythraeum IMS101 Gene: Tery_2606: Ribulose-phosphate 3-epimerase	Ribulose-phosphate 3-epimerase

CRON 5.
chlN	* Cyanothece sp. ATCC 51142 Site: position = -365 score = 4.88585 sequence = AAGTAAGTTTACCT Gene: cce_4534: Light-independent protochlorophyllide reductase subunit N	Cyanothece sp. PCC 7425 Gene: Cyan7425_3941: Light-independent protochlorophyllide reductase subunit N	* Cyanothece sp. PCC 8801 Site: position = -357 score = 4.67909 sequence = AAGCAACTTTACCT Gene: PCC8801_0789: Light-independent protochlorophyllide reductase subunit N	Gloeobacter violaceus PCC 7421 Gene: gvip327: Light-independent protochlorophyllide reductase subunit N	Microcystis aeruginosa NIES-843 Gene: MAE_16250: Light-independent protochlorophyllide reductase subunit N	* Nostoc sp. PCC 7120 Site: position = -7 score = 3.7311 sequence = AAGCAAAATGACCA Gene: all5076: Light-independent protochlorophyllide reductase subunit N	Prochlorococcus marinus str. MIT 9313 Gene: PMT1215: Light-independent protochlorophyllide reductase subunit N	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_1420: Light-independent protochlorophyllide reductase subunit N	Synechococcus sp. JA-3-3Ab Gene: CYA_2385: Light-independent protochlorophyllide reductase subunit N	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A2345: Light-independent protochlorophyllide reductase subunit N	Synechococcus sp. WH 8102 Gene: SYNW1723: Light-independent protochlorophyllide reductase subunit N	* Synechocystis sp. PCC 6803 Site: position = -242 score = 3.54388 sequence = AATTAAAATTAATC Gene: slr0750: Light-independent protochlorophyllide reductase subunit N	Thermosynechococcus elongatus BP-1 Gene: null: Light-independent protochlorophyllide reductase subunit N	Trichodesmium erythraeum IMS101 Gene: Tery_1530: Light-independent protochlorophyllide reductase subunit N	Light-independent protochlorophyllide reductase subunit N

CRON 6.
ndhD	* Cyanothece sp. ATCC 51142 Site: position = -19 score = 4.22604 sequence = GAGTATTTATTCCT Gene: cce_3522: NADH dehydrogenase subunit	Cyanothece sp. PCC 7425	Cyanothece sp. PCC 8801	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843	* Nostoc sp. PCC 7120 Site: position = -160 score = 4.22604 sequence = GAGTATTTATTCCT Site: position = -119 score = 4.06046 sequence = GAGTATAAATTCCT Site: position = -59 score = 4.31105 sequence = AAGTAACAATTCCT Gene: alr0348: NADH dehydrogenase subunit	* Prochlorococcus marinus str. MIT 9313 Site: position = -155 score = 4.1608 sequence = GAGTAGATATACTC Gene: PMT0427: NADH dehydrogenase subunit	* Synechococcus elongatus PCC 7942 Site: position = -42 score = 4.16807 sequence = AAGCAAATCTGCTT Site: position = -87 score = 4.364 sequence = GAGTATTTTTACTC Gene: Synpcc7942_1439: NADH dehydrogenase subunit	* Synechococcus sp. JA-3-3Ab Site: position = -18 score = 4.0115 sequence = GAGTATTTATTCCC Gene: CYA_0520: NADH dehydrogenase subunit	* Synechococcus sp. PCC 7002 Site: position = -20 score = 4.53896 sequence = AAGTATTTTTTCCT Gene: SYNPCC7002_A1973: NADH dehydrogenase subunit	Synechococcus sp. WH 8102 Gene: SYNW1482: NADH dehydrogenase subunit	Synechocystis sp. PCC 6803	* Thermosynechococcus elongatus BP-1 Site: position = -64 score = 4.39733 sequence = AGGTATATATTCTT Gene: null: NADH dehydrogenase subunit	Trichodesmium erythraeum IMS101	NADH dehydrogenase subunit

CRON 7.
pedR	* Cyanothece sp. ATCC 51142 Site: position = -29 score = 4.72316 sequence = AAGTAAATGTACTA Gene: cce_4720: Thioredoxin status sensitive transcription regulator, LuxR family	* Cyanothece sp. PCC 7425 Site: position = -28 score = 4.29687 sequence = AAGTAATTGTACGG Gene: Cyan7425_0293: Thioredoxin status sensitive transcription regulator, LuxR family	* Cyanothece sp. PCC 8801 Site: position = -28 score = 4.72316 sequence = AAGTAAATGTACTA Gene: PCC8801_4139: Thioredoxin status sensitive transcription regulator, LuxR family	Gloeobacter violaceus PCC 7421 Gene: gsl4037: Thioredoxin status sensitive transcription regulator, LuxR family	* Microcystis aeruginosa NIES-843 Site: position = -28 score = 4.74568 sequence = AAGTAAATATACGA Gene: MAE_54580: Thioredoxin status sensitive transcription regulator, LuxR family	* Nostoc sp. PCC 7120 Site: position = -194 score = 4.48539 sequence = AAGTATATTTAATT Site: position = -33 score = 4.60578 sequence = AAGTACATATACCA Gene: asl2551: Thioredoxin status sensitive transcription regulator, LuxR family	* Prochlorococcus marinus str. MIT 9313 Site: position = -366 score = 3.7302 sequence = AAGTAAATCTGATT Gene: PMT2014: Thioredoxin status sensitive transcription regulator, LuxR family	* Synechococcus elongatus PCC 7942 Site: position = -30 score = 4.6803 sequence = AAGTACAAATACTT Gene: Synpcc7942_2264: Thioredoxin status sensitive transcription regulator, LuxR family	Synechococcus sp. JA-3-3Ab Gene: CYA_2351: Thioredoxin status sensitive transcription regulator, LuxR family	* Synechococcus sp. PCC 7002 Site: position = -257 score = 3.68573 sequence = AAGAAAGTTTATCT Gene: SYNPCC7002_A0641: Thioredoxin status sensitive transcription regulator, LuxR family	Synechococcus sp. WH 8102 Gene: SYNW2268: Thioredoxin status sensitive transcription regulator, LuxR family	* Synechocystis sp. PCC 6803 Site: position = -28 score = 4.82382 sequence = GAGTAAATATACCT Gene: ssl0564: Thioredoxin status sensitive transcription regulator, LuxR family	* Thermosynechococcus elongatus BP-1 Site: position = -22 score = 4.64434 sequence = AAGTAATTATACGG Gene: null: Thioredoxin status sensitive transcription regulator, LuxR family	* Trichodesmium erythraeum IMS101 Site: position = -34 score = 5.16069 sequence = AAGCAAATATACTT Gene: Tery_2735: Thioredoxin status sensitive transcription regulator, LuxR family	Thioredoxin status sensitive transcription regulator, LuxR family

CRON 8.
slr1957	* Cyanothece sp. ATCC 51142 Site: position = -166 score = 4.54905 sequence = AAGCATATCTACTT Gene: cce_2950: Conserved hypothetical protein	* Cyanothece sp. PCC 7425 Site: position = -86 score = 5.09377 sequence = AAGTATTTATACCT Gene: Cyan7425_3849: Conserved hypothetical protein	* Cyanothece sp. PCC 8801 Site: position = -148 score = 4.50071 sequence = AAGCAAGATTACCT Gene: PCC8801_3714: Conserved hypothetical protein	Gloeobacter violaceus PCC 7421	Microcystis aeruginosa NIES-843 Gene: MAE_58280: Conserved hypothetical protein	* Nostoc sp. PCC 7120 Site: position = -157 score = 4.32523 sequence = AAGCATGAATACTA Gene: all2740: Conserved hypothetical protein	Prochlorococcus marinus str. MIT 9313	Synechococcus elongatus PCC 7942 Gene: Synpcc7942_0215: Conserved hypothetical protein	Synechococcus sp. JA-3-3Ab	* Synechococcus sp. PCC 7002 Site: position = -217 score = 4.9886 sequence = AAGTAATTATACCC Gene: SYNPCC7002_A1219: Conserved hypothetical protein	Synechococcus sp. WH 8102	* Synechocystis sp. PCC 6803 Site: position = -18 score = 4.77029 sequence = AAGCATAAATACCT Gene: slr1957: Conserved hypothetical protein	Thermosynechococcus elongatus BP-1 Gene: null: Conserved hypothetical protein	Trichodesmium erythraeum IMS101	Conserved hypothetical protein

CRON 9.
ndhD2	Cyanothece sp. ATCC 51142 Gene: cce_1690: NADH dehydrogenase subunit	* Cyanothece sp. PCC 7425 Site: position = -110 score = 4.16904 sequence = AAGTAGGTTTACCC Site: position = -8 score = 4.44268 sequence = AAGTATTTATGCTC Gene: Cyan7425_0836: NADH dehydrogenase subunit	Cyanothece sp. PCC 8801 Gene: PCC8801_3836: NADH dehydrogenase subunit	Gloeobacter violaceus PCC 7421	* Microcystis aeruginosa NIES-843 Site: position = -20 score = 4.20762 sequence = AGGTATTTTTTCTT Gene: MAE_42210: NADH dehydrogenase subunit	* Nostoc sp. PCC 7120 Site: position = -23 score = 4.52917 sequence = AAGTATTTTTGCTT Gene: alr5050: NADH dehydrogenase subunit	Prochlorococcus marinus str. MIT 9313	Synechococcus elongatus PCC 7942	Synechococcus sp. JA-3-3Ab	Synechococcus sp. PCC 7002 Gene: SYNPCC7002_A2327: NADH dehydrogenase subunit	Synechococcus sp. WH 8102	* Synechocystis sp. PCC 6803 Site: position = -20 score = 4.33568 sequence = AGGTATTTATTCTT Gene: slr1291: NADH dehydrogenase subunit	Thermosynechococcus elongatus BP-1	* Trichodesmium erythraeum IMS101 Site: position = -20 score = 4.09521 sequence = AAGTATTTGTGCTC Site: position = -103 score = 4.70466 sequence = AAGTATATATATTT Gene: Tery_3241: NADH dehydrogenase subunit	NADH dehydrogenase subunit

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PedR - Cyanobacteria

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --