Profile of regulator PedR in Cyanobacteria
| Regulator family: | LuxR |
| Regulation mode: | repressor (activator) |
| Biological process: | Photosynthesis; Carbon fixation |
| Effector: | Trx, thioredoxin protein |
| Regulog: | PedR - Cyanobacteria |
Member of regulog collections
- By taxonomy - Cyanobacteria
- By TF family - LuxR
- By effector - Trx, thioredoxin protein
- By pathway - Photosynthesis
- By pathway - Carbon fixation
Transcription factor binding sites
| Locus Tag | Name | Position | Score | Sequence | |
|---|---|---|---|---|---|
| Cyanothece sp. ATCC 51142 | |||||
| cce_2950 | slr1957 | -166 | 4.5 | AAGCATATCTACTT | |
| cce_3522 | ndhD | -19 | 4.2 | GAGTATTTATTCCT | |
| cce_4534 | chlN | -365 | 4.9 | AAGTAAGTTTACCT | |
| cce_4720 | pedR | -29 | 4.7 | AAGTAAATGTACTA | |
| cce_4532 | chlL | -155 | 4.3 | AAGCAATTTTTCTC | |
| Cyanothece sp. PCC 7425 | |||||
| Cyan7425_3849 | slr1957 | -86 | 5.1 | AAGTATTTATACCT | |
| Cyan7425_0836 | ndhD2 | -110 | 4.2 | AAGTAGGTTTACCC | |
| Cyan7425_1996 | rpe | -14 | 3.9 | GAGGAACTTTACCT | |
| Cyan7425_0836 | ndhD2 | -8 | 4.4 | AAGTATTTATGCTC | |
| Cyan7425_0293 | pedR | -28 | 4.3 | AAGTAATTGTACGG | |
| Cyanothece sp. PCC 8801 | |||||
| PCC8801_3714 | slr1957 | -148 | 4.5 | AAGCAAGATTACCT | |
| PCC8801_4139 | pedR | -28 | 4.7 | AAGTAAATGTACTA | |
| PCC8801_1619 | rpe | -275 | 3.6 | AAGCAGCTATTCTG | |
| PCC8801_0791 | chlL | -42 | 4.2 | AGGCAAATACACTT | |
| PCC8801_0789 | chlN | -357 | 4.7 | AAGCAACTTTACCT | |
| Microcystis aeruginosa NIES-843 | |||||
| MAE_42210 | ndhD2 | -20 | 4.2 | AGGTATTTTTTCTT | |
| MAE_54580 | pedR | -28 | 4.7 | AAGTAAATATACGA | |
| MAE_16230 | chlL | -223 | 3.6 | AAGTAAATGTATAA | |
| MAE_53860 | chlB | -319 | 4.5 | AAGCAAAATTACCG | |
| Nostoc sp. PCC 7120 | |||||
| all2740 | slr1957 | -157 | 4.3 | AAGCATGAATACTA | |
| alr5050 | ndhD2 | -23 | 4.5 | AAGTATTTTTGCTT | |
| alr0348 | ndhD | -160 | 4.2 | GAGTATTTATTCCT | |
| alr0348 | ndhD | -119 | 4.1 | GAGTATAAATTCCT | |
| alr0348 | ndhD | -59 | 4.3 | AAGTAACAATTCCT | |
| alr0782 | rpe | -263 | 4.2 | AAGCATCAATACCG | |
| asl2551 | pedR | -194 | 4.5 | AAGTATATTTAATT | |
| asl2551 | pedR | -33 | 4.6 | AAGTACATATACCA | |
| alr3441 | chlB | -56 | 3.7 | AAGCACTTATAGTC | |
| all5076 | chlN | -7 | 3.7 | AAGCAAAATGACCA | |
| Prochlorococcus marinus str. MIT 9313 | |||||
| PMT0427 | ndhD | -155 | 4.2 | GAGTAGATATACTC | |
| PMT2014 | pedR | -366 | 3.7 | AAGTAAATCTGATT | |
| Synechococcus elongatus PCC 7942 | |||||
| Synpcc7942_2264 | pedR | -30 | 4.7 | AAGTACAAATACTT | |
| Synpcc7942_1439 | ndhD | -42 | 4.2 | AAGCAAATCTGCTT | |
| Synpcc7942_1439 | ndhD | -87 | 4.4 | GAGTATTTTTACTC | |
| Synechococcus sp. JA-3-3Ab | |||||
| CYA_0520 | ndhD | -18 | 4 | GAGTATTTATTCCC | |
| CYA_0085 | CYA_0085 | -109 | 3.5 | AACCATATTTTCTC | |
| Synechococcus sp. PCC 7002 | |||||
| SYNPCC7002_A1219 | slr1957 | -217 | 5 | AAGTAATTATACCC | |
| SYNPCC7002_A0641 | pedR | -257 | 3.7 | AAGAAAGTTTATCT | |
| SYNPCC7002_A1973 | ndhD | -20 | 4.5 | AAGTATTTTTTCCT | |
| SYNPCC7002_A1792 | sll0296 | -63 | 4.1 | AAGCATAAATTCCC | |
| SYNPCC7002_A1652 | chlB | -14 | 4.6 | GAGTAAAAATACCT | |
| Synechocystis sp. PCC 6803 | |||||
| slr1957 | slr1957 | -18 | 4.8 | AAGCATAAATACCT | |
| slr1291 | ndhD2 | -20 | 4.3 | AGGTATTTATTCTT | |
| slr0750 | chlN | -242 | 3.5 | AATTAAAATTAATC | |
| slr0749 | chlL | -178 | 4 | AAGTTATTTTATTT | |
| slr0749 | chlL | -196 | 4.8 | AAGTAACTATACCC | |
| slr0772 | chlB | -182 | 3.4 | AAGCATTAAGAATT | |
| sll0296 | sll0296 | -349 | 4.8 | GAGTAAATATACCT | |
| sll0807 | rpe | -27 | 3.5 | GAGTTGAAATACTT | |
| ssl0564 | pedR | -28 | 4.8 | GAGTAAATATACCT | |
| Thermosynechococcus elongatus BP-1 | |||||
| null | ndhD | -64 | 4.4 | AGGTATATATTCTT | |
| null | pedR | -22 | 4.6 | AAGTAATTATACGG | |
| Trichodesmium erythraeum IMS101 | |||||
| Tery_3241 | ndhD2 | -20 | 4.1 | AAGTATTTGTGCTC | |
| Tery_2735 | pedR | -34 | 5.2 | AAGCAAATATACTT | |
| Tery_3241 | ndhD2 | -103 | 4.7 | AAGTATATATATTT | |
| Tery_3812 | chlB | -177 | 4.1 | AGTTAAAAATACTT | |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |