Regulog RutR - Enterobacteriales

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Enterobacteriales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Escherichia coli str. K-12 substr. MG1655	10	3
Salmonella typhimurium LT2	2	1
Citrobacter koseri ATCC BAA-895	2	1
Klebsiella pneumoniae subsp. pneumoniae MGH 78578	10	3
Enterobacter sp. 638	9	2
Erwinia amylovora ATCC 49946	2	1
Yersinia pestis KIM
Serratia proteamaculans 568	7	2
Erwinia carotovora subsp. atroseptica SCRI1043
Edwardsiella tarda EIB202
Proteus mirabilis HI4320
Photorhabdus luminescens subsp. laumondii TTO1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
rutA	* Escherichia coli str. K-12 substr. MG1655 Site: position = -126 score = 6.18212 sequence = TTTTGACCGTTTAGTCCACT Gene: b1012: Pyrimidine oxygenase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -181 score = 5.96368 sequence = TTTTGACCATCCAGTCCACT Gene: KPN_01038: Pyrimidine oxygenase	* Enterobacter sp. 638 Site: position = -185 score = 6.09165 sequence = TTTTGACCATTCAGTCCACT Gene: Ent638_1525: Pyrimidine oxygenase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -187 score = 5.81869 sequence = TTTTGACCAAATGGTCTGTT Gene: Spro_1823: Pyrimidine oxygenase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Pyrimidine oxygenase
rutB	Escherichia coli str. K-12 substr. MG1655 Gene: b1011: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01037: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Enterobacter sp. 638 Gene: Ent638_1524: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_1822: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Peroxyureidoacrylate / ureidoacrylate amido hydrolase
rutC	Escherichia coli str. K-12 substr. MG1655 Gene: b1010: Aminoacrylate peracid reductase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01036: Aminoacrylate peracid reductase	Enterobacter sp. 638 Gene: Ent638_1523: Aminoacrylate peracid reductase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_1821: Aminoacrylate peracid reductase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Aminoacrylate peracid reductase
rutD	Escherichia coli str. K-12 substr. MG1655 Gene: b1009: Aminoacrylate hydrolase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01035: Aminoacrylate hydrolase	Enterobacter sp. 638 Gene: Ent638_1522: Aminoacrylate hydrolase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_1820: Aminoacrylate hydrolase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Aminoacrylate hydrolase
rutE	Escherichia coli str. K-12 substr. MG1655 Gene: b1008: 3-hydroxy propionic acid dehydrogenase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01034: 3-hydroxy propionic acid dehydrogenase	Enterobacter sp. 638 Gene: Ent638_1521: 3-hydroxy propionic acid dehydrogenase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	3-hydroxy propionic acid dehydrogenase
rutF	Escherichia coli str. K-12 substr. MG1655 Gene: b1007: Flavin reductase	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01033: Flavin reductase	Enterobacter sp. 638 Gene: Ent638_1520: Flavin reductase	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_1819: Flavin reductase	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Flavin reductase
rutG	Escherichia coli str. K-12 substr. MG1655 Gene: b1006: Uracil permease	Salmonella typhimurium LT2	Citrobacter koseri ATCC BAA-895	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_01032: Uracil permease	Enterobacter sp. 638 Gene: Ent638_1519: Uracil permease	Erwinia amylovora ATCC 49946	Yersinia pestis KIM	Serratia proteamaculans 568 Gene: Spro_1818: Uracil permease	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Uracil permease

CRON 2.
carA	* Escherichia coli str. K-12 substr. MG1655 Site: position = -294 score = 6.52383 sequence = TTTTGACCATTTGGTCCACT Gene: b0032: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	* Salmonella typhimurium LT2 Site: position = -294 score = 6.50468 sequence = ATTTGACCATTTGGTCCACT Gene: STM0066: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	* Citrobacter koseri ATCC BAA-895 Site: position = -268 score = 6.3552 sequence = TTTTGACCAAATGGTCCACT Gene: CKO_03351: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -267 score = 6.39586 sequence = TTTTGACCATCTGGTCCACT Gene: KPN_00040: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	* Enterobacter sp. 638 Site: position = -294 score = 5.84697 sequence = TTTTGACCATTTGGTCTGGT Gene: Ent638_0591: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	* Erwinia amylovora ATCC 49946 Site: position = -297 score = 6.21231 sequence = TTCTGACCATTTGGTCCACT Gene: EAM_0660: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Yersinia pestis KIM Gene: y3693: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Serratia proteamaculans 568 Gene: Spro_0713: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3871: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Edwardsiella tarda EIB202 Gene: ETAE_0593: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Proteus mirabilis HI4320 Gene: PMI0020: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0603: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB	Escherichia coli str. K-12 substr. MG1655 Gene: b0033: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Salmonella typhimurium LT2 Gene: STM0067: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Citrobacter koseri ATCC BAA-895 Gene: CKO_03350: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Gene: KPN_00041: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Enterobacter sp. 638 Gene: Ent638_0592: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Erwinia amylovora ATCC 49946 Gene: EAM_0661: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Yersinia pestis KIM Gene: y3692: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Serratia proteamaculans 568 Gene: Spro_0714: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Erwinia carotovora subsp. atroseptica SCRI1043 Gene: ECA3870: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Edwardsiella tarda EIB202 Gene: ETAE_0594: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Proteus mirabilis HI4320 Gene: PMI0021: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Photorhabdus luminescens subsp. laumondii TTO1 Gene: plu0604: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)	Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

CRON 3.
rutR	* Escherichia coli str. K-12 substr. MG1655 Site: position = -124 score = 4.34619 sequence = AGTGGACTAAACGGTCAAAA Gene: b1013: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Salmonella typhimurium LT2 Gene: STM1122: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Citrobacter koseri ATCC BAA-895 Gene: CKO_02045: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	* Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Site: position = -123 score = 4.16644 sequence = AGTGGACTGGATGGTCAAAA Gene: KPN_01039: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Enterobacter sp. 638 Gene: Ent638_1539: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Erwinia amylovora ATCC 49946 Gene: EAM_1396: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Yersinia pestis KIM	* Serratia proteamaculans 568 Site: position = -118 score = 4.95994 sequence = AACAGACCATTTGGTCAAAA Gene: Spro_1824: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Erwinia carotovora subsp. atroseptica SCRI1043	Edwardsiella tarda EIB202	Proteus mirabilis HI4320	Photorhabdus luminescens subsp. laumondii TTO1	Transcriptional regulator RutR of pyrimidine catabolism, TetR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RutR - Enterobacteriales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --