Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagated regulons of Bacillus megaterium QM B1551

Type Regulator Effector Pathway Genes Sites
TF AraR Arabinose Arabinose utilization 2 4
TF ArgR Arginine Arginine biosynthesis; Arginine degradation 7 19
TF ArsR Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) Arsenic resistance 2 4
TF BglR Beta-glucoside-6-phosphate Beta-glucosides utilization 1 1
TF BglZ Beta-glucoside Beta-glucosides utilization 1 1
TF BirA Biotin Biotin biosynthesis 5 5
TF BkdR Branched-chain amino acid degradation 2 2
TF BsdA Salicylate Salicylic acid resistance 2 2
TF CcpA HPr, phosphocarrier protein Carbon catabolism 54 70
TF CcpC Citrate Citrate metabolism 1 1
TF CcpN Gluconeogenesis 2 2
TF CggR Fructose-1,6-diphosphate Glycolysis 1 1
TF CitT Citrate Citrate utilization 1 3
TF CodY Guanosine triphosphate; Branched-chain amino acids Amino acid metabolism 65 123
TF CssR CssS, sensor histidine kinase Protein secretion stress response 1 1
TF CtsR Heat shock Heat shock response 3 4
TF CymR O-acetyl-L-serine; CysK, cysteine synthetase Cysteine metabolism 14 17
TF CysL Sulfate; Sulfite; Thiosulfate Sulfite reduction 2 6
TF CzrA Zinc ion, (Zn2+); Silver ion, (Ag+); Nickel ion, (Ni2+); Copper ion, (Cu2+); Cobalt ion, (Co2+); Cadmium, ion (Cd2+) Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance 1 1
TF DesR Cold shock response 1 1
TF FadR Palmitoyl-CoA; Oleoyl-CoA Fatty acid degradation 4 4
TF FapR Malonyl-CoA Fatty acid biosynthesis 6 9
TF FatR Oleate; Gamma-linolenic acid; Linoleate; Phytanate Toxic fatty acid stress response 1 1
TF Fnr Oxygen Anaerobic metabolism 2 5
TF FrlR Fructoselysine 6-phosphate Fructoselysine utilization 3 4
TF Fur Iron ion, (Fe2+) Iron homeostasis 11 26
TF GbsR (YuaC) Choline Glycine betaine synthesis 1 2
TF GlnL GlnK, sensor histidine kinase (glutamine) Aspartate utilization; Glutamine utilization 1 2
TF GlnR Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 3 4
TF GltC Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 2
TF GltC2 Glutamate; 2-oxoglutarate; RocG, glutamate dehydrogenase Glutamate metabolism 2 4
TF GltR unknown 3 3
TF GudR Glucarate utilization; Galactarate utilization 2 3
TF HisR Histidine Histidine biosynthesis 2 2
TF HrcA Heat shock Heat shock response 3 3
TF HxlR Formaldehyde Ribulose monophosphate pathway 1 1
TF IolR1 Inositol utilization 1 1
TF IolR2 Inositol utilization 2 3
TF KipR Sporulation 1 1
TF LexA DNA damage SOS response 10 13
TF LiaR LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) Cell wall-active antibiotics stress response 2 2
TF LicR HPr, phosphocarrier protein; LicB, lichenan-specific enzyme IIB PTS component Beta-glucosides utilization 1 1
TF LutR L-lactate Lactate utilization 2 2
TF MalR MalK, sensor histidine kinase (malate) Malate utilization 7 64
TF MhqR 2-Methylhydroquinone and catechol resistance 3 3
TF MntR Manganese ion, (Mn2+) Manganese homeostasis 2 2
TF MsmR Alpha-galactosides Alpha-galactosides utilization 1 1
TF NagR N-acetylglucosamine-6-phosphate N-acetylglucosamine utilization 2 2
TF NiaR Niacin NAD biosynthesis 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 1
TF NsrR Nitric oxide Nitrosative stress response 3 5
TF PadR p-Coumaric acid; Ferulic acid Phenolic acid stress response 1 1
TF PerR Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) Oxidative stress response; Peroxide stress response 9 17
TF PurR 5-phosphoribosyl 1-pyrophosphate Purine metabolism 6 9
TF RbsR Ribose Ribose utilization 1 1
TF Rex NADH Energy metabolism 4 6
TF RmgR Rhamnogalacturonides utilization 1 2
TF SdpR SdpI, signal transduction protein Toxin-antitoxin system 1 1
TF SinR SinI, antirepressor protein Biofilm formation 1 1
TF TnrA NrgB, ammonium uptake protein; NrgA, ammonium uptake protein; Feedback-inhibited GlnA, glutamine synthetase Nitrogen assimilation 48 94
TF TreR Trehalose-6-phosphate Trehalose utilization 1 2
TF XylR Xylose Xylose utilization 2 6
TF YczG Utilization of aromatic compounds 2 2
TF YodB/CatR Diamide; Quinone Oxidative stress response 2 4
TF YrkD Multidrug resistance 7 8
TF YtlI L-cystine transporter 6 13
TF YybA Polyamine homeostasis 2 2
TF YybR/YdeP Multidrug resistance 3 3
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 6 6
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