Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of CcpA regulog to Bacillus megaterium QM B1551

Reference regulog properties
Source regulog: CcpA - Bacillales
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus megaterium QM B1551
Orthologous TF(s) BMQ_4818
Regulated genes 54
Built upon 559 sites [see more]
Predicted regulatory interactions in Bacillus megaterium QM B1551
Locus tag Position Score Sequence
Position: -60
Score: 4.5
Sequence: ATGAAAGCGTTTAATC
Locus tag: BMQ_0202
BMQ_0202 -60 4.5 ATGAAAGCGTTTAATC
Supported by regulated orthologs from reference regulons
Ortholog gene name: mtlA
Ortholog function: PTS family mannitol-permease II, BC component
Anoxybacillus flavithermus WK1 Aflv_1566 -58 4.5 CTGTAAGCGCTTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_004230 -96 4.6 TTGTAAGCGTTTTATG
Bacillus halodurans C-125 BH3854 -39 4.3 ATGAGAGCGCTTTATT
Bacillus licheniformis DSM 13 BLi00505 -94 4.4 CTGTAAGCGTTTTAAT
Bacillus pumilus SAFR-032 BPUM_0369 -106 4.1 GTGAAAGCGTTTTACG
Bacillus subtilis subsp. subtilis str. 168 BSU03981 -95 4 CTGTAAGCGTTTTAAC
Geobacillus kaustophilus HTA426 GK1948 -54 4.8 TTGTAAGCGTTTTAAG
Oceanobacillus iheyensis HTE831 OB2603 -75 4.4 TTGTAAGCGGATTCCT
Paenibacillus sp. JDR-2 Pjdr2_6226 -33 4.1 AAGAAAGCGATTTTAT
Position: -169
Score: 5
Sequence: TTGACAACGCTTTCAT
Position: -36
Score: 4.2
Sequence: TTTTAATCGTTTTCAT
Locus tag: BMQ_0530
BMQ_0530 -169 5 TTGACAACGCTTTCAT
-36 4.2 TTTTAATCGTTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: glpF
Ortholog function: Glycerol uptake facilitator protein
Bacillus cereus ATCC 14579 BC1034 -191 4.7 TTGACACCGCTTTCAT
Bacillus clausii KSM-K16 ABC3383 -198 4.2 ATGTATCCGTTTACAA
Bacillus licheniformis DSM 13 BLi00994 -207 4.5 TTGACAACGCTTTCAC
Bacillus pumilus SAFR-032 BPUM_0882 -191 4.9 TTGACAACGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU09280 -182 4.7 TTGACACCGCTTTCAT
Geobacillus kaustophilus HTA426 GK1359 -206 5.1 TTGACAGCGTTTTCAA
Oceanobacillus iheyensis HTE831 OB2476 -164 4.7 TTGACAACGCTTTCAG
Position: -137
Score: 4.3
Sequence: ATGAAAGGGTTTTCGT
Position: -42
Score: 4.3
Sequence: AAGAAAACGGTTTCAC
Locus tag: BMQ_0560
BMQ_0560 -137 4.3 ATGAAAGGGTTTTCGT
-42 4.3 AAGAAAACGGTTTCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmX
Ortholog function: Maltose/maltodextrin transport ATP-binding protein (EC 3.6.3.19)
Anoxybacillus flavithermus WK1 Aflv_2303 -30 4.4 ATGAAATCGATTACAT
Bacillus clausii KSM-K16 ABC1514 -48 4.6 ATGAAAGGGGTTACAA
Bacillus halodurans C-125 BH1140 -47 4.6 TTGTAAGCGCTACAAT
Bacillus licheniformis DSM 13 BLi01052 -34 4.6 GTTAAAGCGCTTACAT
Bacillus pumilus SAFR-032 BPUM_0922 -41 4.1 AGTGAAGCGCTTTCAA
Oceanobacillus iheyensis HTE831 OB1134 -37 4.1 ATGTAATCGTTAACAC
Position: -68
Score: 5.3
Sequence: TTGAAAACGCTTTCTT
Locus tag: BMQ_0775
BMQ_0775 -68 5.3 TTGAAAACGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: lrgA
Ortholog function: Antiholin-like protein LrgA
Bacillus cereus ATCC 14579 BC5439 -59 5 ATGTAAACGCTTACTT
Bacillus licheniformis DSM 13 BLi03037 -68 4.8 TTGAAAACGCTTTTTT
Bacillus pumilus SAFR-032 BPUM_2534 -68 4.5 TTGTAAACGCTTCATT
Bacillus subtilis subsp. subtilis str. 168 BSU28910 -68 4.9 TTGTAAGCGCTTTATA
Position: -49
Score: 5.3
Sequence: ATGAAAGCGCTTTAAA
Locus tag: BMQ_0803
BMQ_0803 -49 5.3 ATGAAAGCGCTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: glsA1
Ortholog function: Glutaminase (EC 3.5.1.2)
Bacillus amyloliquefaciens FZB42 RBAM_002800 -62 5 TTGAAAACGTTTTCCA
Bacillus halodurans C-125 BH2717 -32 5.3 ATGTAAACGCTTTCAT
Bacillus licheniformis DSM 13 BLi00274 -208 4.9 TTGAAAACGCTTATAT
Bacillus pumilus SAFR-032 BPUM_0244 -216 5.2 ATGTAAGCGTTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU02430 -81 4.4 ATGAAAGCGTTTAACG
Position: -42
Score: 5.1
Sequence: ATGTAAGCGTTAACAA
Locus tag: BMQ_0833
BMQ_0833 -42 5.1 ATGTAAGCGTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: dctA
Ortholog function: C4-dicarboxylate transport protein
Bacillus amyloliquefaciens FZB42 RBAM_004800 -54 5.3 TTGAAAACGCTATCAT
Bacillus pumilus SAFR-032 BPUM_0419 -72 4.8 TTGAAATCGCTATCAT
Bacillus subtilis subsp. subtilis str. 168 BSU04470 -64 5.3 ATGAAAACGCTATCAT
Position: -33
Score: 5.1
Sequence: ATGAAAGCGGATTCAA
Locus tag: BMQ_0850
BMQ_0850 -33 5.1 ATGAAAGCGGATTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: citH
Ortholog function: Ca2+/citrate complex secondary transporter
Bacillus cereus ATCC 14579 BC0562 -36 5.1 TTGAAAGCGCAATCAT
Position: -37
Score: 4.6
Sequence: GTGTAAACGGTTACAT
Locus tag: BMQ_0921
BMQ_0921 -37 4.6 GTGTAAACGGTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: rbsR
Ortholog function: Ribose operon repressor, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_033080 -33 5 ATGTAAACGGTTACAT
Bacillus pumilus SAFR-032 BPUM_3263 -38 4.2 GTGTAAACGGTTACAC
Bacillus subtilis subsp. subtilis str. 168 BSU35910 -34 5 ATGTAAACGGTTACAT
Oceanobacillus iheyensis HTE831 OB2577 -68 4.8 ATCAAAACGCTTTCAT
-40 4.1 CTGAAACCGGTTCCAT
Position: -28
Score: 4.7
Sequence: ATGAAAACGGAAACAA
Locus tag: BMQ_0956
BMQ_0956 -28 4.7 ATGAAAACGGAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: treP
Ortholog function: PTS system, trehalose-specific enzyme II, BC component (EC 2.7.1.69)
Bacillus amyloliquefaciens FZB42 RBAM_007970 318 4 GTGAAAACGCTTGCGG
Bacillus cereus ATCC 14579 BC0631 234 4.4 TTGATAACGCTTGCAG
Bacillus halodurans C-125 BH2216 136 4.4 TTGAAAGCCTTGACAT
318 4.4 GTGAAAACGCTTGCTG
Bacillus licheniformis DSM 13 BLi00796 318 4.6 GTGAAAACGCTTGCAG
Bacillus subtilis subsp. subtilis str. 168 BSU07800 318 4.6 GTGAAAACGCTTGCAG
Position: -104
Score: 4.9
Sequence: ATGTAAACGTTATCTA
Position: -83
Score: 4.4
Sequence: ATTTAAACGTTTTAAA
Locus tag: BMQ_1378
BMQ_1378 -104 4.9 ATGTAAACGTTATCTA
-83 4.4 ATTTAAACGTTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbB
Ortholog function: CBS domain protein
Bacillus amyloliquefaciens FZB42 RBAM_014810 -95 4.3 ATGAAAGCGTTACACT
Bacillus licheniformis DSM 13 BLi01712 -142 4.5 ATGAAAGCGTTAAACT
Bacillus pumilus SAFR-032 BPUM_1387 -116 4.5 ATGAAAGCGTTAAACT
Bacillus subtilis subsp. subtilis str. 168 BSU14950 -97 4.5 ATGAAAGCGTTAAACT
Position: -143
Score: 5
Sequence: ATGAAAGCGCTTAATA
Locus tag: BMQ_1588
BMQ_1588 -143 5 ATGAAAGCGCTTAATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: levD
Ortholog function: PTS-system fructose-specific enzyme IIA component (EC 2.7.1.69)
Bacillus licheniformis DSM 13 BLi02831 -81 4.9 ATGAAAACGCTTAATA
Bacillus subtilis subsp. subtilis str. 168 BSU27070 -80 4.6 ATGAAAACGCTTAACA
Position: 34
Score: 5.1
Sequence: TTGAAAGCGCAAACAA
Locus tag: BMQ_1864
BMQ_1864 34 5.1 TTGAAAGCGCAAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: xylA
Ortholog function: Xylose isomerase (EC 5.3.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_017350 34 5.1 TTGAAAGCGCAAACAA
Bacillus clausii KSM-K16 ABC0572 -72 4.7 TTGACACCGCTTACAA
Bacillus halodurans C-125 BH2757 -33 4.7 TTGATAACGCTTACTT
Bacillus licheniformis DSM 13 BLi04048 -109 4.5 TTGAAAGCGATTAATT
Bacillus subtilis subsp. subtilis str. 168 BSU17600 34 4.7 TTGGAAGCGCAAACAA
Geobacillus kaustophilus HTA426 GK1875 -59 5 ATGAAAGCGTTATAAT
Position: -87
Score: 4.7
Sequence: ATGATAACGTTTTCTT
Locus tag: BMQ_1883
BMQ_1883 -87 4.7 ATGATAACGTTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acoR
Ortholog function: Transcriptional activator of acetoin dehydrogenase operon AcoR
Bacillus amyloliquefaciens FZB42 RBAM_008340 -67 5 TTGAAAGCGCTTTATT
Bacillus cereus ATCC 14579 BC2766 -78 5 TTGAAAACGCTTTTAT
Bacillus halodurans C-125 BH1826 -117 4.7 TTGTTAGCGCTTTCTT
Bacillus licheniformis DSM 13 BLi00853 -51 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_0455 -59 5.1 TTGAAAGCGCTTTTAT
Bacillus subtilis subsp. subtilis str. 168 BSU08100 -67 5 TTGAAAGCGCTTTATT
Position: -33
Score: 4.8
Sequence: ATGAAAACGCTTTTTT
Locus tag: BMQ_2130
BMQ_2130 -33 4.8 ATGAAAACGCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: fruR
Ortholog function: Transcriptional regulator of fructose utilization, DeoR family
Anoxybacillus flavithermus WK1 Aflv_1478 -24 4.6 ATGTAAGCGATTTAAA
Bacillus amyloliquefaciens FZB42 RBAM_014120 -28 4.5 ATGAATACGTTTCCAA
Bacillus cereus ATCC 14579 BC3720 -46 4.3 TTGTGACCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01652 -29 4.6 ATGAAGGCGTTTCCAA
Bacillus pumilus SAFR-032 BPUM_1334 -30 4.7 ATGAATACGTTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU14380 -29 4.7 ATGAATACGTTTTCAT
Oceanobacillus iheyensis HTE831 OB0840 -113 5 TTGAAAGCGTTTTATT
Position: -88
Score: 5
Sequence: TTGAAAGCGTTTTATT
Locus tag: BMQ_2757
BMQ_2757 -88 5 TTGAAAGCGTTTTATT
Supported by regulated orthologs from reference regulons
Ortholog gene name: msmR
Ortholog function: Transcriptional regulator of alpha-galactoside utilization, LacI family
Bacillus amyloliquefaciens FZB42 RBAM_027180 -91 4.8 TTGAAAACGCTTACTC
Bacillus halodurans C-125 BH2227 -95 4.5 TTGAAAACGCTTACCC
Bacillus licheniformis DSM 13 BLi01139 -75 4.2 TTGAAAACTTTTACCT
Bacillus pumilus SAFR-032 BPUM_1754 -78 4.4 TTGAAAGCGCTTTACC
Bacillus subtilis subsp. subtilis str. 168 BSU30260 -86 4.8 TTGTAACCGCTTACTT
Position: -168
Score: 5
Sequence: AAGAAAGCGTTTACAA
Locus tag: BMQ_2820
BMQ_2820 -168 5 AAGAAAGCGTTTACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: gntR
Ortholog function: Gluconate operon transcriptional repressor
Bacillus licheniformis DSM 13 BLi04286 -81 4.7 ATGAAAGTGTTTGCAT
Bacillus subtilis subsp. subtilis str. 168 BSU40050 -81 4.7 ATGAAAGTGTTTGCAT
Oceanobacillus iheyensis HTE831 OB3190 -79 4.3 ATTCAAGCGTTTACAA
Position: -236
Score: 4.4
Sequence: TATAAAACGCTTTCAA
Locus tag: BMQ_2897
BMQ_2897 -236 4.4 TATAAAACGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: odhA
Ortholog function: 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)
Bacillus amyloliquefaciens FZB42 RBAM_019130 -101 4.7 TTGGAAGCGTTTTTAT
Bacillus cereus ATCC 14579 BC1252 -101 4.3 AAGAAAACATTTACAT
Bacillus clausii KSM-K16 ABC2114 -63 4.8 TTGTAAGCGCTTGAAA
Bacillus halodurans C-125 BH2206 -64 5 ATGAAAGCGTTATAAA
Bacillus licheniformis DSM 13 BLi02260 -100 4.3 GTGGAAGCGTTTTTAT
Bacillus pumilus SAFR-032 BPUM_1862 -101 4.7 TTGGAAGCGTTTTATT
Bacillus subtilis subsp. subtilis str. 168 BSU19370 -101 4.7 TTGGAAGCGTTTTTAT
Geobacillus kaustophilus HTA426 GK1023 -123 4.1 GTGAAAACGTTTATAC
Oceanobacillus iheyensis HTE831 OB1089 -51 4.3 TTTGAACCGTTTTCAT
Paenibacillus sp. JDR-2 Pjdr2_4724 -242 4.4 ATGAATACGCTTTAAA
Position: -64
Score: 4.9
Sequence: ATGAAAGTGTTTACAT
Locus tag: BMQ_3434
BMQ_3434 -64 4.9 ATGAAAGTGTTTACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: BH0705
Ortholog function: Uronate isomerase (EC 5.3.1.12)
Bacillus halodurans C-125 BH0705 -76 4.7 TTGAAAAGGTTTACAA
Position: -260
Score: 4.5
Sequence: ATGAAATCGATTTCAT
Position: -88
Score: 4.5
Sequence: ATGAAATCGATTTCAT
Locus tag: BMQ_3471
BMQ_3471 -260 4.5 ATGAAATCGATTTCAT
-88 4.5 ATGAAATCGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolD
Ortholog function: Epi-inositol hydrolase (EC 3.7.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_036750 -172 5.1 ATGAAAACGTTGTCAT
Bacillus clausii KSM-K16 ABC0425 -35 4.5 ATGAAAGCGGTTTACT
Bacillus halodurans C-125 BH2318 -281 4.8 TTGAAAACGATTTCAG
-142 4.5 CTGAAAGCGCTTTTAA
-44 4.5 ATGAAATCGATTACAA
Bacillus licheniformis DSM 13 BLi04248 -176 4.7 ATGGAAACGTTGTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU39730 -172 5.1 ATGAAAACGTTGTCAT
Position: -186
Score: 4.5
Sequence: CTGAAAGCGTTTTTAA
Position: -102
Score: 4.5
Sequence: ATGAAATCGATTTCAT
Locus tag: BMQ_3477
BMQ_3477 -186 4.5 CTGAAAGCGTTTTTAA
-102 4.5 ATGAAATCGATTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: iolE
Ortholog function: Inosose dehydratase (EC 4.2.1.44)
Bacillus amyloliquefaciens FZB42 RBAM_036740 -172 5.1 ATGAAAACGTTGTCAT
Bacillus clausii KSM-K16 ABC0426 -154 4.4 ATGAAAGTGCTGCCAA
Bacillus halodurans C-125 BH2317 -281 4.8 TTGAAAACGATTTCAG
-142 4.5 CTGAAAGCGCTTTTAA
-44 4.5 ATGAAATCGATTACAA
Bacillus licheniformis DSM 13 BLi04247 -176 4.7 ATGGAAACGTTGTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU39720 -172 5.1 ATGAAAACGTTGTCAT
Position: -66
Score: 5.2
Sequence: ATGAAAGCGTTTTAAA
Locus tag: BMQ_3539
BMQ_3539 -66 5.2 ATGAAAGCGTTTTAAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: araE
Ortholog function: Arabinose-proton symporter
Bacillus licheniformis DSM 13 BLi02065 -178 5.2 TTGAAAGCGTTTAAAA
-93 5.1 TTGAAAGCGCTTTTAT
Bacillus pumilus SAFR-032 BPUM_2326 -35 4.7 ATGAAAGCGGTTAATT
Oceanobacillus iheyensis HTE831 OB2796 -88 5 ATGAAAGCGTTTTATA
Position: -295
Score: 4
Sequence: AAGGAAGCGCTTTCCG
Locus tag: BMQ_3543
BMQ_3543 -295 4 AAGGAAGCGCTTTCCG
Supported by regulated orthologs from reference regulons
Ortholog gene name: araR
Ortholog function: Transcriptional repressor of arabinoside utilization operon, GntR family
Bacillus amyloliquefaciens FZB42 RBAM_031330 -229 4.9 ATAAAAACGCTTACAA
-59 4.6 ATGAAAGGGCTTACTA
Bacillus licheniformis DSM 13 BLi02061 -265 4 CTGATAGCGATTTCAT
-239 4 AAGAAAGCATTTTCCT
Bacillus pumilus SAFR-032 BPUM_2330 -254 4.9 TTGATAGCGGTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU33970 -115 4.4 AGTAAAGCGTTTTCAT
Oceanobacillus iheyensis HTE831 OB2800 -289 4.1 CTGAAAACGCCTACAT
Position: -142
Score: 4.9
Sequence: ATGAAAGCGTATTAAT
Locus tag: BMQ_4017
BMQ_4017 -142 4.9 ATGAAAGCGTATTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sacP
Ortholog function: PTS sucrose-specific enzyme IIBC component
Anoxybacillus flavithermus WK1 Aflv_2785 -147 4.7 ATGAAAGCGGATAAAA
Bacillus amyloliquefaciens FZB42 RBAM_035290 -175 4.7 ACGAAAGCGCTATCAT
-151 5 ATGAAAGCGCATTAAA
Bacillus cereus ATCC 14579 BC0775 -158 4.7 AAGAAAGCGTTGACAA
Bacillus halodurans C-125 BH1856 -170 4.3 GAGAAAGCGTTGACAA
Bacillus licheniformis DSM 13 BLi04017 -154 4.9 ATGAAAGCGTATTAAA
Bacillus pumilus SAFR-032 BPUM_3452 -145 5.1 ATGAAAGCGTAATCAA
Bacillus subtilis subsp. subtilis str. 168 BSU38050 -151 5 ATGAAAGCGTATTCTT
Position: -63
Score: 4.8
Sequence: ATGAAAGCGCAGTCTA
Locus tag: BMQ_4205
BMQ_4205 -63 4.8 ATGAAAGCGCAGTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sucC
Ortholog function: Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5)
Bacillus amyloliquefaciens FZB42 RBAM_015920 -52 4.8 ATGAAAGCGCAGTCTA
Bacillus licheniformis DSM 13 BLi01829 -53 4.8 ATGAAAGCGCAGTCTA
Bacillus pumilus SAFR-032 BPUM_1507 -57 4.8 ATGAAAGCGCAGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU16090 -51 4.8 ATGAAAGCGCAGTCTA
Geobacillus kaustophilus HTA426 GK1208 -47 4.2 ATGAAAGCGCTAAGAC
Position: -92
Score: 5.1
Sequence: TAGAAAGCGTTTTCAA
Locus tag: BMQ_4289
BMQ_4289 -92 5.1 TAGAAAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngH
Ortholog function: Biotin carboxylase of methylcrotonyl-CoA carboxylase (EC 6.3.4.14)
Bacillus amyloliquefaciens FZB42 RBAM_018370 -44 5.2 ATGAAAACGTTTACTA
Bacillus clausii KSM-K16 ABC1507 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1132 -251 4.6 AAGAAACCGTTTACAA
Bacillus licheniformis DSM 13 BLi02143 -35 5.3 ATGAAAACGCTTTCTA
Bacillus pumilus SAFR-032 BPUM_1784 -35 4.8 ATGTAAACGCTTACCA
Bacillus subtilis subsp. subtilis str. 168 BSU18240 -41 4.8 ATGTAAACGCTTTCCT
Position: -242
Score: 5.3
Sequence: TTGAAAACGCTTTCTA
Locus tag: BMQ_4290
BMQ_4290 -242 5.3 TTGAAAACGCTTTCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ylbP
Ortholog function: Uncharacterized N-acetyltransferase (EC 2.3.1.-)
Bacillus amyloliquefaciens FZB42 RBAM_014960 -46 4.9 ATTAAAGCGTTTACAA
Bacillus clausii KSM-K16 ABC2369 -70 4.2 TTTAATGCGTTTTCAT
Bacillus licheniformis DSM 13 BLi01727 -48 4.5 AAAAAAGCGTTTACAA
Bacillus pumilus SAFR-032 BPUM_1403 -58 4.8 ATGAAAACGCCTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU15100 -48 4.4 AATAAAGCGTTTACAA
Oceanobacillus iheyensis HTE831 OB1458 -59 4.3 TAGGAAGCGTTATCTT
Position: -57
Score: 4
Sequence: GTGATTGCGCTTTCAA
Locus tag: BMQ_4327
BMQ_4327 -57 4 GTGATTGCGCTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ndk
Ortholog function: Nucleoside diphosphate kinase (EC 2.7.4.6)
Anoxybacillus flavithermus WK1 Aflv_1096 -104 4.3 ATTAAATCGTTTTCAT
Bacillus amyloliquefaciens FZB42 RBAM_020890 -37 4.5 TTGAAAGCCTATACAT
Bacillus clausii KSM-K16 ABC1890 -70 4.4 TTGTTAGCGTTTTCCT
Bacillus licheniformis DSM 13 BLi02408 -39 4.5 TTGAAAGCCTATACAT
Bacillus pumilus SAFR-032 BPUM_2004 -43 4.3 ATGTAAGCCTATACAT
Bacillus subtilis subsp. subtilis str. 168 BSU22730 -38 4.1 GTGAAAGCCTATACAT
Geobacillus kaustophilus HTA426 GK2209 -105 4.4 TTATTAGCGCTTTCAA
Position: -152
Score: 4.9
Sequence: TTGAAAACACTTTCAT
Locus tag: BMQ_4396
BMQ_4396 -152 4.9 TTGAAAACACTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: drm
Ortholog function: Phosphopentomutase (EC 5.4.2.7)
Anoxybacillus flavithermus WK1 Aflv_0998 -114 4.9 ATGAAAACGTTTTATA
Bacillus amyloliquefaciens FZB42 RBAM_021610 -74 4.5 ATGTAAACGGTTTATA
Bacillus cereus ATCC 14579 BC4087 -222 4.5 AAGAAAGCGTAAACAT
Bacillus licheniformis DSM 13 BLi02500 -99 4.1 GTGTAAACGGTTTATA
Bacillus pumilus SAFR-032 BPUM_2081 -82 4.5 TTGTAAACGGTTTATA
Bacillus subtilis subsp. subtilis str. 168 BSU23500 -77 4.7 ATGAAAACGGTTTATA
Position: -137
Score: 4.3
Sequence: AAGATAGCGTTTTCAG
Locus tag: BMQ_4497
BMQ_4497 -137 4.3 AAGATAGCGTTTTCAG
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgY
Ortholog function: Uncharacterized short membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_023110 -73 4.8 ATGAAAATGTTTACAT
Bacillus clausii KSM-K16 ABC2500 -76 4.4 AAGAAAGCATTTACAA
Bacillus licheniformis DSM 13 BLi02652 -71 4.8 ATGAAAATGTTTACAT
Bacillus pumilus SAFR-032 BPUM_2208 -76 4.6 ATGTAAATGTTTACAT
Bacillus subtilis subsp. subtilis str. 168 BSU24780 -72 4.8 ATGAAAATGTTTACAT
Oceanobacillus iheyensis HTE831 OB1915 -75 4.6 ATAGAAACGTTTACAA
Paenibacillus sp. JDR-2 Pjdr2_3908 -124 4.3 ATCATAACGCTTTCAA
Position: -179
Score: 4.8
Sequence: ATTAAAGCGCTATCAT
Locus tag: BMQ_4498
BMQ_4498 -179 4.8 ATTAAAGCGCTATCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgX
Ortholog function: Similar to Hydroxyacylglutathione hydrolase, but in an organism lacking glutathione biosynthesis
Bacillus amyloliquefaciens FZB42 RBAM_023120 -109 4.4 TTTTAACCGTTTTCAT
Bacillus clausii KSM-K16 ABC2499 -98 4.3 TTGTACCCGTTTTCAT
Bacillus halodurans C-125 BH2820 -112 4.5 TTTTAAACGTTTTCTT
Bacillus licheniformis DSM 13 BLi02653 -105 4.4 TTTTAACCGTTTTCAT
Bacillus pumilus SAFR-032 BPUM_2209 -103 4.4 TTTTAACCGTTTTCAT
Bacillus subtilis subsp. subtilis str. 168 BSU24790 -84 4.3 TCGATAGCGTTTTCAT
Position: -45
Score: 4.7
Sequence: ATGATAGCGCTTTAAT
Locus tag: BMQ_4499
BMQ_4499 -45 4.7 ATGATAGCGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yqgW
Ortholog function: Alkaliphily related protein
Bacillus amyloliquefaciens FZB42 RBAM_023130 -61 4.8 ATGAAAACGGTTAAAA
Bacillus clausii KSM-K16 ABC2498 -57 4.5 ATGAAAACGGGTACAA
Bacillus halodurans C-125 BH2819 -168 4.5 AAGAAAACGTTTAAAA
Bacillus licheniformis DSM 13 BLi02654 -66 4.8 ATGAAAACGGTTAAAA
Bacillus pumilus SAFR-032 BPUM_2210 -40 4.8 ATGAAAACGGTTAAAA
Bacillus subtilis subsp. subtilis str. 168 BSU24800 -88 4.8 ATGAAAACGCTATCGA
Position: -35
Score: 5
Sequence: ATGTAAGCGTATACAT
Locus tag: BMQ_4541
BMQ_4541 -35 5 ATGTAAGCGTATACAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngJ
Ortholog function: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
Bacillus clausii KSM-K16 ABC1506 -77 4.6 TTGGTAACGCTTTCAT
Bacillus halodurans C-125 BH1130 -105 4.7 TTGGTAGCGCTTACAT
Geobacillus kaustophilus HTA426 GK1597 -103 4.9 TTGAAAACGCTTCAAA
Position: -294
Score: 4.5
Sequence: AAGTAAACGCTTACTT
Position: -227
Score: 4.6
Sequence: TAGTAAGCGTTAACAA
Locus tag: BMQ_4725
BMQ_4725 -294 4.5 AAGTAAACGCTTACTT
-227 4.6 TAGTAAGCGTTAACAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: sdhC
Ortholog function: Succinate dehydrogenase cytochrome b558 subunit
Bacillus amyloliquefaciens FZB42 RBAM_025520 -143 4.3 ATGTACACGTTTTCTT
Bacillus cereus ATCC 14579 BC4518 -178 4.3 ATGTATACGTTTTCTT
Bacillus clausii KSM-K16 ABC2664 -190 4.3 TTGAATCCGTTTTCTT
Bacillus licheniformis DSM 13 BLi02994 -143 4.4 ATGTACGCGTTTTCTT
Bacillus pumilus SAFR-032 BPUM_2503 -139 4.2 ATGTACGCGGTTTCTT
Bacillus subtilis subsp. subtilis str. 168 BSU28450 -139 4.4 ATGTACGCGTTTTCTT
Position: -169
Score: 4.6
Sequence: ATGTAAGCATTTTCTT
Locus tag: BMQ_4770
BMQ_4770 -169 4.6 ATGTAAGCATTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: mmgD
Ortholog function: Citrate synthase (si) (EC 2.3.3.1)
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Anoxybacillus flavithermus WK1 Aflv_0504 -107 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_026180 -114 4.6 ATGTAAGCATTTTCTT
Bacillus amyloliquefaciens FZB42 RBAM_022420 -43 4.6 GTGTAAGCGTTATCTT
Bacillus clausii KSM-K16 ABC1805 -63 4.9 ATGTAAGCGCTTTATT
Bacillus clausii KSM-K16 ABC2715 174 4.6 TTGGAATCGTTTTCAA
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus licheniformis DSM 13 BLi03062 -115 4.6 ATGTAAGCATTTTCTT
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus pumilus SAFR-032 BPUM_2556 -111 4.6 ATGTAAGCATTTTCTT
-69 4.5 TGGATAGCGCTTTCAA
Bacillus subtilis subsp. subtilis str. 168 BSU24140 -37 4.9 TTGTAAGCGCTGTCTA
Bacillus subtilis subsp. subtilis str. 168 BSU29140 -114 4.6 ATGTAAGCATTTTCTT
Oceanobacillus iheyensis HTE831 OB2269 -39 4.4 TTGACTGCGCTTTCAA
Position: -228
Score: 5
Sequence: ATTAAAGCGTTTTCAA
Locus tag: BMQ_4812
BMQ_4812 -228 5 ATTAAAGCGTTTTCAA
Supported by regulated orthologs from reference regulons
Ortholog gene name: acsA
Ortholog function: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Anoxybacillus flavithermus WK1 Aflv_0462 237 4.9 ATGAAAGAGTTTTCAA
Bacillus amyloliquefaciens FZB42 RBAM_026800 -102 4.5 TATAAAGCGTTTTCAA
Bacillus clausii KSM-K16 ABC2760 -65 4.7 TTGAAAACGTTACCTT
0 4.8 ATGAAAGCGCTTCCTG
Bacillus halodurans C-125 BH3234 6 4.4 TTGCAAGCGCTTCCAG
Bacillus licheniformis DSM 13 BLi03119 6 4.7 TTGAAAGCGCTGCCAG
Bacillus pumilus SAFR-032 BPUM_2616 -30 4.7 TTGTAAACGTATGCAA
Bacillus subtilis subsp. subtilis str. 168 BSU29680 -101 4.5 TATAAAGCGTTTTCAA
6 4.8 TTGAAAGCGTTACCAG
Oceanobacillus iheyensis HTE831 OB0022 -36 4.5 TTGTAATCGTTTGCAA
Paenibacillus sp. JDR-2 Pjdr2_3796 -56 5 TTGAAAGCGTATTCTT
Position: -72
Score: 5.1
Sequence: TTGAAAACGCTTTAAT
Locus tag: BMQ_4813
BMQ_4813 -72 5.1 TTGAAAACGCTTTAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: acuA
Ortholog function: Acetyltransferase AcuA, acetyl-CoA synthetase inhibitor
Anoxybacillus flavithermus WK1 Aflv_0461 -70 4.7 ATGAAAACGATTTAAT
Bacillus amyloliquefaciens FZB42 RBAM_026810 -72 4.9 TTGAAAACGCTTTATA
Bacillus licheniformis DSM 13 BLi03120 -69 4.9 ATGAAAACGCTTAATA
Bacillus pumilus SAFR-032 BPUM_2617 -74 4.4 GTGAAACCGTTTTAAT
Bacillus subtilis subsp. subtilis str. 168 BSU29690 -75 4.9 TTGAAAACGCTTTATA
Position: -49
Score: 5
Sequence: TAGAAAACGCTTTCAT
Locus tag: BMQ_4924
BMQ_4924 -49 5 TAGAAAACGCTTTCAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yngI
Ortholog function: Long-chain fatty-acid-CoA ligase (EC 6.2.1.3)
Bacillus amyloliquefaciens FZB42 RBAM_018380 -44 5.2 ATGAAAACGTTTACTA
Bacillus halodurans C-125 BH1131 -251 4.6 AAGAAACCGTTTACAA
Bacillus licheniformis DSM 13 BLi02144 -35 5.3 ATGAAAACGCTTTCTA
Bacillus pumilus SAFR-032 BPUM_1785 -35 4.8 ATGTAAACGCTTACCA
Bacillus subtilis subsp. subtilis str. 168 BSU18250 -41 4.8 ATGTAAACGCTTTCCT
Geobacillus kaustophilus HTA426 GK1598 -103 4.9 TTGAAAACGCTTCAAA
Oceanobacillus iheyensis HTE831 OB2217 -64 4.9 TTGTAAGCGGTTACTT
Position: -47
Score: 5.1
Sequence: TTGAAAGCGTTTTTAT
Locus tag: BMQ_5053
BMQ_5053 -47 5.1 TTGAAAGCGTTTTTAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: sigL
Ortholog function: DNA-directed RNA polymerase sigma subunit SigL
Anoxybacillus flavithermus WK1 Aflv_2521 211 4.9 ATGTAAGCGTTTTTAA
Bacillus amyloliquefaciens FZB42 RBAM_031510 567 4.5 TGGAAAGCGCTTACAC
Bacillus cereus ATCC 14579 BC5143 488 4.6 ATTGAAGCGCTTACAA
Bacillus clausii KSM-K16 ABC3025 544 4.1 TTGACATCGTTTTAAA
Bacillus halodurans C-125 BH3563 -71 4.4 TCGTAAGCGCTTACAG
Bacillus licheniformis DSM 13 BLi03678 250 4.4 TTAAAAGCGCTTTGAA
Bacillus pumilus SAFR-032 BPUM_3063 951 4.7 ATGAAACCGCTTACGA
Bacillus subtilis subsp. subtilis str. 168 BSU34200 564 4.6 TGGAAAACGCTTTCAG
Geobacillus kaustophilus HTA426 GK3061 96 4.7 TTGGAAGCGTTTTTAT
Position: -109
Score: 4.9
Sequence: ATAAAAGCGCTTTCTT
Locus tag: BMQ_5239
BMQ_5239 -109 4.9 ATAAAAGCGCTTTCTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: cstA
Ortholog function: Carbon starvation-induced membrane protein
Bacillus amyloliquefaciens FZB42 RBAM_025770 0 4.4 ATGAATGCGATTACAA
Bacillus licheniformis DSM 13 BLi03019 -62 4.3 ATGATTGCGCTTACAA
Bacillus pumilus SAFR-032 BPUM_2525 0 4.6 ATGAATGCGGTTACAA
Bacillus subtilis subsp. subtilis str. 168 BSU28710 0 4.6 ATGAATGCGGTTACAA
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