Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Propagation of MalR regulog to Bacillus megaterium QM B1551

Reference regulog properties
Source regulog: MalR - Bacillales
Regulator type: Transcription factor
Regulator family: CitB
Regulation mode: activator
Biological process: Malate utilization
Effector: MalK, sensor histidine kinase (malate)
Phylum: Firmicutes
Propagated regulon:
Target genome Bacillus megaterium QM B1551
Orthologous TF(s) No orthologous TFs found
Regulated genes 7
Built upon 11 sites [see more]
Predicted regulatory interactions in Bacillus megaterium QM B1551
Locus tag Position Score Sequence
Position: -348
Score: 5.1
Sequence: TTTTTATAATT-(8)-TTTCCATATTA
Position: -337
Score: 6.1
Sequence: AAACATTTTTT-(13)-TTATTTTGACT
Position: -336
Score: 5.7
Sequence: AACATTTTTTC-(12)-TTATTTTGACT
Position: -332
Score: 5.3
Sequence: TTTTTTCCATA-(8)-TTATTTTGACT
Position: -329
Score: 5.4
Sequence: TTTCCATATTA-(5)-TTATTTTGACT
Position: -313
Score: 5.6
Sequence: TTATTTTGACT-(12)-TGAATAGAATA
Position: -155
Score: 5.1
Sequence: TAAAATATACT-(4)-TCAAATGAATT
Position: -88
Score: 5.2
Sequence: TGAGTAATATC-(11)-TTAATTACTTA
Position: -66
Score: 5.5
Sequence: TTAATTACTTA-(8)-CAACTTGTATG
Position: -62
Score: 6.3
Sequence: TTACTTAAATC-(4)-CAACTTGTATG
Locus tag: BMQ_2057
BMQ_2057 -348 5.1 TTTTTATAATT-(8)-TTTCCATATTA
-337 6.1 AAACATTTTTT-(13)-TTATTTTGACT
-336 5.7 AACATTTTTTC-(12)-TTATTTTGACT
-332 5.3 TTTTTTCCATA-(8)-TTATTTTGACT
-329 5.4 TTTCCATATTA-(5)-TTATTTTGACT
-313 5.6 TTATTTTGACT-(12)-TGAATAGAATA
-155 5.1 TAAAATATACT-(4)-TCAAATGAATT
-88 5.2 TGAGTAATATC-(11)-TTAATTACTTA
-66 5.5 TTAATTACTTA-(8)-CAACTTGTATG
-62 6.3 TTACTTAAATC-(4)-CAACTTGTATG
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
Position: 10
Score: 5.1
Sequence: GTCAAATTTTT-(13)-CTATCTTTTTT
Position: 11
Score: 6.2
Sequence: TCAAATTTTTC-(12)-CTATCTTTTTT
Position: 12
Score: 5.8
Sequence: CAAATTTTTCT-(11)-CTATCTTTTTT
Position: 13
Score: 5.2
Sequence: AAATTTTTCTC-(10)-CTATCTTTTTT
Position: 16
Score: 5.5
Sequence: TTTTTCTCATT-(7)-CTATCTTTTTT
Position: 18
Score: 5.1
Sequence: TTTCTCATTCT-(5)-CTATCTTTTTT
Locus tag: BMQ_2632
BMQ_2632 10 5.1 GTCAAATTTTT-(13)-CTATCTTTTTT
11 6.2 TCAAATTTTTC-(12)-CTATCTTTTTT
12 5.8 CAAATTTTTCT-(11)-CTATCTTTTTT
13 5.2 AAATTTTTCTC-(10)-CTATCTTTTTT
16 5.5 TTTTTCTCATT-(7)-CTATCTTTTTT
18 5.1 TTTCTCATTCT-(5)-CTATCTTTTTT
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus amyloliquefaciens FZB42 RBAM_034200 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03952 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3347 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Position: -175
Score: 5.6
Sequence: TTTATTGTTAG-(12)-TTTCATTTATC
Position: -174
Score: 5.9
Sequence: TTATTGTTAGG-(11)-TTTCATTTATC
Position: -168
Score: 5.6
Sequence: TTAGGTTGAAC-(5)-TTTCATTTATC
Position: -101
Score: 6.1
Sequence: TCAATCTCTTT-(2)-TTGTTTTCATT
Position: -97
Score: 6
Sequence: TCTCTTTTTTT-(2)-TTTCATTAAAA
Position: -93
Score: 5.1
Sequence: TTTTTTTGTTT-(4)-TAAAAATAAAT
Position: -89
Score: 5.1
Sequence: TTTGTTTTCAT-(13)-TTAAAAATATA
Position: -88
Score: 5.8
Sequence: TTGTTTTCATT-(12)-TTAAAAATATA
Locus tag: BMQ_2633
BMQ_2633 -175 5.6 TTTATTGTTAG-(12)-TTTCATTTATC
-174 5.9 TTATTGTTAGG-(11)-TTTCATTTATC
-168 5.6 TTAGGTTGAAC-(5)-TTTCATTTATC
-101 6.1 TCAATCTCTTT-(2)-TTGTTTTCATT
-97 6 TCTCTTTTTTT-(2)-TTTCATTAAAA
-93 5.1 TTTTTTTGTTT-(4)-TAAAAATAAAT
-89 5.1 TTTGTTTTCAT-(13)-TTAAAAATATA
-88 5.8 TTGTTTTCATT-(12)-TTAAAAATATA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
Position: -340
Score: 5.3
Sequence: TTAAGCATCTT-(10)-GTGTTTTTTTT
Position: -335
Score: 5.4
Sequence: CATCTTTCATT-(5)-GTGTTTTTTTT
Position: -268
Score: 6.1
Sequence: TTACTAAGGTT-(6)-TTACTGTATTG
Position: -265
Score: 5.5
Sequence: CTAAGGTTGTA-(3)-TTACTGTATTG
Position: -251
Score: 5.9
Sequence: TTACTGTATTG-(10)-TTTGTGTGATT
Position: -230
Score: 5.4
Sequence: TTTGTGTGATT-(5)-TTAAATAAATG
Position: -52
Score: 5.7
Sequence: ATAATTATCTT-(10)-CAAATTTATAT
Position: -51
Score: 5.4
Sequence: TAATTATCTTT-(13)-TTTATATGATT
Position: -49
Score: 5.2
Sequence: ATTATCTTTCT-(11)-TTTATATGATT
Position: -48
Score: 5.9
Sequence: TTATCTTTCTA-(10)-TTTATATGATT
Position: -32
Score: 5.6
Sequence: GCAAATTTATA-(3)-TTGATTCTAAT
Position: -31
Score: 5.6
Sequence: CAAATTTATAT-(2)-TTGATTCTAAT
Position: -27
Score: 5.5
Sequence: TTTATATGATT-(4)-CTAATCTAAAC
Position: 22
Score: 5.9
Sequence: TTAGTCAAATC-(4)-TTATTTTAACC
Locus tag: BMQ_2642
BMQ_2642 -340 5.3 TTAAGCATCTT-(10)-GTGTTTTTTTT
-335 5.4 CATCTTTCATT-(5)-GTGTTTTTTTT
-268 6.1 TTACTAAGGTT-(6)-TTACTGTATTG
-265 5.5 CTAAGGTTGTA-(3)-TTACTGTATTG
-251 5.9 TTACTGTATTG-(10)-TTTGTGTGATT
-230 5.4 TTTGTGTGATT-(5)-TTAAATAAATG
-52 5.7 ATAATTATCTT-(10)-CAAATTTATAT
-51 5.4 TAATTATCTTT-(13)-TTTATATGATT
-49 5.2 ATTATCTTTCT-(11)-TTTATATGATT
-48 5.9 TTATCTTTCTA-(10)-TTTATATGATT
-32 5.6 GCAAATTTATA-(3)-TTGATTCTAAT
-31 5.6 CAAATTTATAT-(2)-TTGATTCTAAT
-27 5.5 TTTATATGATT-(4)-CTAATCTAAAC
22 5.9 TTAGTCAAATC-(4)-TTATTTTAACC
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkB
Ortholog function: Malate permease
Bacillus amyloliquefaciens FZB42 RBAM_034200 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03952 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3347 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Position: -248
Score: 6.1
Sequence: TAAAACTAATT-(9)-TTAACTATGTT
Position: -246
Score: 5.4
Sequence: AAACTAATTTT-(7)-TTAACTATGTT
Position: -243
Score: 6.9
Sequence: CTAATTTTTCT-(4)-TTAACTATGTT
Position: -242
Score: 6.6
Sequence: TAATTTTTCTT-(3)-TTAACTATGTT
Position: -146
Score: 6
Sequence: TTAATTATATG-(12)-CTTCTTCGTTT
Position: -73
Score: 5.2
Sequence: ATAATGATATC-(12)-AAAATATTGTT
Position: -50
Score: 6.2
Sequence: AAAATATTGTT-(5)-TTACATTCTTT
Position: -48
Score: 5.7
Sequence: AATATTGTTTT-(3)-TTACATTCTTT
Position: -47
Score: 6.6
Sequence: ATATTGTTTTT-(2)-TTACATTCTTT
Position: -46
Score: 5.1
Sequence: TATTGTTTTTT-(2)-TACATTCTTTT
Position: -45
Score: 5.5
Sequence: ATTGTTTTTTT-(5)-TTCTTTTAAGA
Position: -44
Score: 6.2
Sequence: TTGTTTTTTTT-(4)-TTCTTTTAAGA
Position: -43
Score: 5.5
Sequence: TGTTTTTTTTT-(3)-TTCTTTTAAGA
Locus tag: BMQ_3748
BMQ_3748 -248 6.1 TAAAACTAATT-(9)-TTAACTATGTT
-246 5.4 AAACTAATTTT-(7)-TTAACTATGTT
-243 6.9 CTAATTTTTCT-(4)-TTAACTATGTT
-242 6.6 TAATTTTTCTT-(3)-TTAACTATGTT
-146 6 TTAATTATATG-(12)-CTTCTTCGTTT
-73 5.2 ATAATGATATC-(12)-AAAATATTGTT
-50 6.2 AAAATATTGTT-(5)-TTACATTCTTT
-48 5.7 AATATTGTTTT-(3)-TTACATTCTTT
-47 6.6 ATATTGTTTTT-(2)-TTACATTCTTT
-46 5.1 TATTGTTTTTT-(2)-TACATTCTTTT
-45 5.5 ATTGTTTTTTT-(5)-TTCTTTTAAGA
-44 6.2 TTGTTTTTTTT-(4)-TTCTTTTAAGA
-43 5.5 TGTTTTTTTTT-(3)-TTCTTTTAAGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: ywkA
Ortholog function: NAD-dependent malate dehydrogenase (EC 1.1.1.38)
Bacillus amyloliquefaciens FZB42 RBAM_034210 -206 -0.8 AACTTAAAAAA-(10)-AAATTAAGTAA
Bacillus licheniformis DSM 13 BLi03953 -242 -0.8 AACTTAATTAA-(10)-AAATTAACTAA
Bacillus pumilus SAFR-032 BPUM_3348 -209 0.5 AAATTAAATAA-(10)-AAATTATCTAA
Bacillus subtilis subsp. subtilis str. 168 BSU37050 -156 -1 AATTTAAATAA-(10)-AAATTAAGTAA
Position: -251
Score: 5.3
Sequence: TGCAGTTTATT-(5)-TTGATAAAATA
Position: -250
Score: 5.1
Sequence: GCAGTTTATTT-(4)-TTGATAAAATA
Position: -181
Score: 5.3
Sequence: TAAATATTGTC-(10)-ATAAAATAATA
Position: -102
Score: 6.4
Sequence: AAACGTATTTT-(5)-TTATTTTATTT
Position: -98
Score: 6.4
Sequence: GTATTTTTACA-(6)-TTATTTTAAAT
Position: -95
Score: 5.9
Sequence: TTTTTACAATT-(3)-TTATTTTAAAT
Locus tag: BMQ_5242
BMQ_5242 -251 5.3 TGCAGTTTATT-(5)-TTGATAAAATA
-250 5.1 GCAGTTTATTT-(4)-TTGATAAAATA
-181 5.3 TAAATATTGTC-(10)-ATAAAATAATA
-102 6.4 AAACGTATTTT-(5)-TTATTTTATTT
-98 6.4 GTATTTTTACA-(6)-TTATTTTAAAT
-95 5.9 TTTTTACAATT-(3)-TTATTTTAAAT
Supported by regulated orthologs from reference regulons
Ortholog gene name: yflS
Ortholog function: Putative malate transporter
Bacillus amyloliquefaciens FZB42 RBAM_007730 -89 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
Bacillus halodurans C-125 BH3327 -63 7.4 TTGCTCTTTTA-(6)-CTACTTTTTTT
-46 7.7 CTACTTTTTTT-(6)-TTAGGTTAATC
Bacillus subtilis subsp. subtilis str. 168 BSU07570 -91 5.2 TTTTTTAATTA-(9)-TTTATTAACTT
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